Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

3176605 .. 3180289

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03750.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGATCTTGAACGGCTCGAAGCTCCTGCCCGGCTAATGATAGTTTCAGATCTCGATCATACAATGGTTGATCATCATGACACTGAGAACCTTTCCCTGCTCAGATTCAATTCTTTGTGGGAAGCGAATTACCGTTACGATTCTCTGCTGGTTTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGAAAAGAGAAACCCATGTTAACTCCCGATATAACAATAATGTCTGTAGGAACCGAGATAACATATGGTAACACAATGGTTCCTGATGATGGCTGGGTTGAGGTTCTGAATCAAAAATGGGATAGGAACATAGTCAAAGAGGAAGCCAGCAAATTTTCTGAACTTAAACTTCAGGCAGAAACAGAGCAACGGCCACACAAGGTTAGCTTTTATGTTGAGAAAGCCAAGGCTCAGGAAGTGACAAAGATAATCTATAGTGGAGGAATGGATTTGGATATATTACCACAAGGTGCTGGCAAAGGACAAGCTCTTGCATATTTGCTTAAGAAATTTAAGAGTGAGGGAAGGCCACCTGTTAACACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGCATTCCAGAAGTATATGGTGTCATGGTTAGCAATGCCCAAGAAGAATTGTTGCAGTGGCATGCTGAAAATGCTAAGGGTAATACAAGGATTATTCATGCAACAGAGAGATGTGCAGCTGGAATCATACAAGCCATTGGCCACTTTAAGCTAGGTCCAAGTTTGCCCCCAAGAGATATTGCAGATTTTTCTGACTATAAACTGGAGAATCCAAATCCTGGTCACGAACTAGTAAAGTTTTTCTTGTTCTATGAGAAATGGAGACGCGCAGAAGTTGAGAATTCAGAGATCTATTTGGCAAGTTTGAAAGCAGATTGTTCTCCATCCGGTACATTTGTCCATCCTTCTGGAGTTGAGCACTCTCTTTCTGACAGCATAAATGGTCTGAGAAACTGCTACGGAGACAAACAGGGAAAACAATTTCGGGTTTGGGTGGATGGGGTATTAGCTACACATGTTGGTTCAAACACATGGCTAGTGAAGTTCGATAAGTGGGAATTATCTGGTGAAGAACGTTATGCAACAAAGGGAACAGCTGTTATAAGTTCAAAGGGTTCCGGTGTGTCAGCTGGTTTCACTTGGATTCGAGTGCACCAGACGTGGTACAAAGGATACGAAGCAAAAGATGATTCAACGTGGTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

414

Amino Acids

46.61

Weight (kDa)

5.71

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1136
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccII	CGCG	1 cut(s)	861
AclI	AACGTT	1 cut(s)	1108
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	383, 733
AcsI	RAATTY	3 cut(s)	344, 521, 874
AcuI	CTGAAG	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	182, 925, 1199
AfiI	CCNNNNNNNGG	2 cut(s)	281, 812
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	1048
AgsI	TTSAA	7 cut(s)	11, 109, 159, 901, 1059, 1143, 1227
AhlI	ACTAGT	1 cut(s)	823
AjiI	CACGTC	1 cut(s)	1194
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	9 cut(s)	23, 399, 500, 589, 713, 745, 1043, 1130, 1163
AluI	AGCT	9 cut(s)	23, 399, 500, 589, 713, 745, 1043, 1130, 1163
Alw21I	GWGCWC	2 cut(s)	954, 1188
Alw26I	GTCTC	2 cut(s)	850, 990
Alw44I	GTGCAC	1 cut(s)	1184
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	383, 539, 733
ApaLI	GTGCAC	1 cut(s)	1184
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	3 cut(s)	344, 521, 874
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	162, 578, 1112
AvaII	GGWCC	1 cut(s)	749
BaeGI	GKGCMC	1 cut(s)	1188
BaeI	ACNNNNGTAYC	2 cut(s)	915, 948
BalI	TGGCCA	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	954, 1188
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	4 cut(s)	275, 925, 942, 1025
BceAI	ACGGC	2 cut(s)	29, 398
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	813
BciVI	GTATCC	1 cut(s)	1199
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	850, 990
BcuI	ACTAGT	1 cut(s)	823
BfaI	CTAG	3 cut(s)	746, 824, 1070
BfmI	CTRYAG	2 cut(s)	237, 445
BfrI	CTTAAG	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	1199
BglII	AGATCT	2 cut(s)	49, 882
BisI	GCNGC	1 cut(s)	711
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	2 cut(s)	31, 813
Bme18I	GGWCC	1 cut(s)	749
BmgBI	CACGTC	1 cut(s)	1194
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	3 cut(s)	244, 273, 1150
BmrFI	CCNGG	2 cut(s)	31, 813
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	818, 963
Bpu10I	CCTNAGC	2 cut(s)	423, 669
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	2 cut(s)	920, 1151
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 812
Bse1I	ACTGG	2 cut(s)	166, 801
Bse3DI	GCAATG	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	917, 934, 1036
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	281, 812
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	5 cut(s)	75, 115, 437, 576, 971
BseNI	ACTGG	2 cut(s)	166, 801
BseSI	GKGCMC	1 cut(s)	1188
BseXI	GCAGC	1 cut(s)	722
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	3 cut(s)	385, 541, 735
BsiHKAI	GWGCWC	2 cut(s)	954, 1188
BsiSI	CCGG	3 cut(s)	31, 921, 1152
BslI	CCNNNNNNNGG	2 cut(s)	281, 812
BsmAI	GTCTC	2 cut(s)	850, 990
BsmBI	CGTCTC	1 cut(s)	850
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	385, 541, 735
Bsp1286I	GDGCHC	2 cut(s)	954, 1188
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	4, 49, 55, 70, 882
Bsp1720I	GCTNAGC	1 cut(s)	585
BspANI	GGCC	3 cut(s)	385, 541, 735
BspCNI	CTCAG	5 cut(s)	76, 114, 436, 577, 972
BspFNI	CGCG	1 cut(s)	861
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	244, 273, 1150
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	166, 801
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	4, 49, 55, 70, 882
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	134, 180
BstAFI	CTTAAG	1 cut(s)	515
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	340, 487, 657
BstDEI	CTNAG	6 cut(s)	84, 101, 423, 585, 669, 980
BstEII	GGTNACC	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	917, 934, 1036
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	863
BstKTI	GATC	5 cut(s)	7, 52, 58, 73, 885
BstMAI	GTCTC	2 cut(s)	850, 990
BstMBI	GATC	5 cut(s)	4, 49, 55, 70, 882
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	2 cut(s)	659, 1052
BstPI	GGTNACC	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	29, 811
BstSFI	CTRYAG	2 cut(s)	237, 445
BstSLI	GKGCMC	1 cut(s)	1188
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	722
BstX2I	RGATCY	3 cut(s)	4, 49, 882
BstXI	CCANNNNNNTGG	1 cut(s)	941
BstYI	RGATCY	3 cut(s)	4, 49, 882
BsuI	GTATCC	1 cut(s)	1199
BsuRI	GGCC	3 cut(s)	385, 541, 735
BtrI	CACGTC	1 cut(s)	1194
BtsCI	GGATG	3 cut(s)	917, 934, 1036
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	3 cut(s)	81, 176, 656
Cac8I	GCNNGC	3 cut(s)	340, 487, 657
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	3 cut(s)	181, 924, 1198
CviAII	CATG	7 cut(s)	77, 208, 619, 656, 692, 1049, 1065
CviQI	GTAC	3 cut(s)	181, 924, 1198
DdeI	CTNAG	6 cut(s)	84, 101, 423, 585, 669, 980
DpnI	GATC	5 cut(s)	6, 51, 57, 72, 884
DpnII	GATC	5 cut(s)	4, 49, 55, 70, 882
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	383, 733
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	850
FaeI	CATG	7 cut(s)	80, 211, 622, 659, 695, 1052, 1068
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 821, 853
FatI	CATG	7 cut(s)	76, 207, 618, 655, 691, 1048, 1064
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	3 cut(s)	904, 921, 1043
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	3 cut(s)	746, 824, 1070
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	1 cut(s)	711
GsaI	CCCAGC	1 cut(s)	289
GsuI	CTGGAG	2 cut(s)	818, 963
HaeIII	GGCC	3 cut(s)	385, 541, 735
HapII	CCGG	3 cut(s)	31, 921, 1152
HgaI	GACGC	1 cut(s)	867
HhaI	GCGC	1 cut(s)	863
Hin1II	CATG	7 cut(s)	80, 211, 622, 659, 695, 1052, 1068
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HincII	GTYRAC	2 cut(s)	213, 550
HindII	GTYRAC	2 cut(s)	213, 550
HinfI	GANTC	8 cut(s)	105, 140, 301, 569, 717, 802, 1177, 1223
HpaI	GTTAAC	2 cut(s)	213, 550
HpaII	CCGG	3 cut(s)	31, 921, 1152
HphI	GGTGA	3 cut(s)	162, 578, 1112
Hpy166II	GTNNAC	3 cut(s)	213, 550, 1186
Hpy188I	TCNGA	8 cut(s)	49, 104, 300, 352, 787, 880, 964, 981
Hpy8I	GTNNAC	3 cut(s)	213, 550, 1186
HpyAV	CCTTC	3 cut(s)	159, 531, 948
HpyCH4III	ACNGT	2 cut(s)	134, 180
HpyCH4IV	ACGT	3 cut(s)	1108, 1193, 1229
HpyCH4V	TGCA	7 cut(s)	506, 649, 695, 710, 776, 1115, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	6 cut(s)	84, 101, 423, 585, 669, 980
HpySE526I	ACGT	3 cut(s)	1108, 1193, 1229
Hsp92II	CATG	7 cut(s)	80, 211, 622, 659, 695, 1052, 1068
HspAI	GCGC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	70
KspAI	GTTAAC	2 cut(s)	213, 550
Kzo9I	GATC	5 cut(s)	4, 49, 55, 70, 882
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	3 cut(s)	746, 824, 1070
MaeII	ACGT	3 cut(s)	1108, 1193, 1229
MaeIII	GTNAC	6 cut(s)	134, 168, 260, 430, 566, 815
MalI	GATC	5 cut(s)	6, 51, 57, 72, 884
MboI	GATC	5 cut(s)	4, 49, 55, 70, 882
MboII	GAAGA	3 cut(s)	650, 1115, 1228
MflI	RGATCY	3 cut(s)	4, 49, 882
MhlI	GDGCHC	2 cut(s)	954, 1188
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	9 cut(s)	109, 127, 188, 344, 521, 641, 874, 1013, 1091
MluNI	TGGCCA	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	4 cut(s)	286, 325, 446, 526
Mox20I	TGGCCA	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	6 cut(s)	212, 357, 516, 525, 549, 741
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	3 cut(s)	713, 1130, 1163
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	3 cut(s)	31, 921, 1152
MspR9I	CCNGG	2 cut(s)	31, 813
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	31
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	5 cut(s)	4, 49, 55, 70, 882
NlaIII	CATG	7 cut(s)	80, 211, 622, 659, 695, 1052, 1068
NlaIV	GGNNCC	3 cut(s)	244, 273, 1150
NmuCI	GTSAC	4 cut(s)	168, 430, 566, 815
NspI	RCATGY	2 cut(s)	659, 1052
PaeI	GCATGC	1 cut(s)	659
PagI	TCATGA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	7 cut(s)	105, 140, 301, 717, 802, 1177, 1223
PflMI	CCANNNNNTGG	1 cut(s)	812
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PscI	ACATGT	1 cut(s)	1048
PsiI	TTATAA	1 cut(s)	1136
Psp1406I	AACGTT	1 cut(s)	1108
Psp6I	CCWGG	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	3 cut(s)	244, 273, 1150
PspPI	GGNCC	1 cut(s)	749
PsuI	RGATCY	3 cut(s)	4, 49, 882
PvuII	CAGCTG	3 cut(s)	713, 1130, 1163
RsaI	GTAC	3 cut(s)	182, 925, 1199
RsaNI	GTAC	3 cut(s)	181, 924, 1198
SaqAI	TTAA	6 cut(s)	212, 357, 516, 525, 549, 741
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	5 cut(s)	4, 49, 55, 70, 882
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	31, 813
SduI	GDGCHC	2 cut(s)	954, 1188
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	2 cut(s)	237, 445
SinI	GGWCC	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	823
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	9 cut(s)	109, 127, 188, 344, 521, 641, 874, 1013, 1091
SspMI	CTAG	3 cut(s)	746, 824, 1070
StyD4I	CCNGG	2 cut(s)	29, 811
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	134, 180
TaiI	ACGT	3 cut(s)	1111, 1196, 1232
TaqI	TCGA	4 cut(s)	18, 54, 1080, 1180
TasI	AATT	9 cut(s)	109, 127, 188, 344, 521, 641, 874, 1013, 1091
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	7 cut(s)	105, 140, 301, 717, 802, 1177, 1223
Tru1I	TTAA	6 cut(s)	212, 357, 516, 525, 549, 741
Tru9I	TTAA	6 cut(s)	212, 357, 516, 525, 549, 741
TscAI	CASTG	3 cut(s)	88, 183, 656
TseFI	GTSAC	4 cut(s)	168, 430, 566, 815
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	4 cut(s)	168, 430, 566, 815
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	3 cut(s)	88, 183, 656
Van91I	CCANNNNNTGG	1 cut(s)	812
Vha464I	CTTAAG	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	1184
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	3 cut(s)	344, 521, 874
XceI	RCATGY	2 cut(s)	659, 1052
XspI	CTAG	3 cut(s)	746, 824, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.