Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006369.1

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

36905 .. 41238

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006369.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

atgctgtatagtgaggttcgtactagagcagcaggtccatttggaaggcgattctcacgcagacaaagcctaatattcccactgctgcttcgacagaaagctattacttctgaactttacaggataatcatggatcggctcaaggctccggctcggctaatgatagtttcggatcttgatcatacaatggttgatcatcatgacaaggagaatctttctcttctccggtttaattctctttgggaagccaattatcgtcacgactctctgctggtcttttcaactggaaggtcaccgacactgtacaaagaattgaggaaagagaaacctatgctgactccggatataacaataatgtctgtgggaactgagataacttacggtaacgcgatggttccagatgatggttgggttgaggttctgaatcagaagtgggataagaacattgtcaaagaggaatcaagcaagtttcctgaacttaagcttcaggcagaaacagagcaacgggcacacaaggttagcttttatgttgagaaagacaaggctcagacagtgacaaaggctctttcagaggctttgaaacagcgtgggttggatgttaagataatctatagtggaggaatagatttggatatattaccacaaggtgctggaaaaggacaagctcttgcatatttgcttcagaaatttaagactgagggacatccacctgttaatactcttgtttgtggtgactctggaaatgatgctgagctttttagtatccctgaagtatatggagtcatggttaagaacgcccaagaagaactgttgcagtggcatgctgaaaatgctaaggataacaaaaagattattcatgcaacagagagatgtgcagctggtatcattcaagccattggtcactttagtctaggtccaaatttgccccccagagatgttacagatacttcagactgtacgctggaaaatgcgaaccctggtcatagtatagtggagtttttcttattctatgagaaatggcgacgtgcagaaattgagaattcagagatctatctagccggtgtgaaagccaattgttgtccatctgctacatatgtccatcctactggcaacgagcaaagtcttcataactgcataaatgctctgagaggctgctatggagacaaacagggaaaacattatcgagtttgggtagatcaggttttacccacacaaatcgattcaaagacgtggctagtgaagttcgatatgtgggtattatctggtgaggaacaatatgcagcaagggggactgcgatattttcttcaaagggtgagagtccttcagatcagctcacttggattcgtgggcatcagacatggatcagaggatatgaaccaaaacaagttgcaccatttttcggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

468

Amino Acids

53.02

Weight (kDa)

6.93

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccII	CGCG	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	340
AclWI	GGATC	3 cut(s)	141, 180, 1370
AcsI	RAATTY	3 cut(s)	686, 919, 1039
AcuI	CTGAAG	5 cut(s)	470, 665, 789, 933, 1308
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	3 cut(s)	22, 305, 958
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1400
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	5 cut(s)	282, 580, 890, 1224, 1308
AjiI	CACGTC	2 cut(s)	1025, 1230
AjnI	CCWGG	1 cut(s)	976
AluBI	AGCT	7 cut(s)	101, 484, 522, 665, 754, 878, 1333
AluI	AGCT	7 cut(s)	101, 484, 522, 665, 754, 878, 1333
Alw26I	GTCTC	1 cut(s)	1155
AlwI	GGATC	3 cut(s)	141, 180, 1370
Aor13HI	TCCGGA	1 cut(s)	340
ApeKI	GCWGC	5 cut(s)	29, 85, 875, 1152, 1280
ApoI	RAATTY	3 cut(s)	686, 919, 1039
AspS9I	GGNCC	2 cut(s)	35, 914
AsuHPI	GGTGA	4 cut(s)	285, 743, 1277, 1325
AvaII	GGWCC	2 cut(s)	35, 914
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	1115
BbvI	GCAGC	5 cut(s)	41, 72, 887, 1139, 1292
BccI	CCATC	4 cut(s)	385, 398, 1090, 1107
BciT130I	CCWGG	1 cut(s)	978
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	2 cut(s)	178, 193
BcoDI	GTCTC	1 cut(s)	1155
BfaI	CTAG	4 cut(s)	24, 911, 1055, 1235
BfmI	CTRYAG	1 cut(s)	610
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	1047
BisI	GCNGC	5 cut(s)	30, 86, 876, 1153, 1281
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	5 cut(s)	31, 87, 877, 1154, 1282
Bme1390I	CCNGG	1 cut(s)	978
Bme18I	GGWCC	2 cut(s)	35, 914
BmgBI	CACGTC	2 cut(s)	1025, 1230
BmgT120I	GGNCC	2 cut(s)	35, 914
BmiI	GGNNCC	2 cut(s)	147, 396
BmrFI	CCNGG	1 cut(s)	978
BmsI	GCATC	2 cut(s)	736, 1360
BpiI	GAAGAC	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	834
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	1218
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	976
BsaWI	WCCGGW	2 cut(s)	225, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1400
Bse118I	RCCGGY	1 cut(s)	1058
Bse1I	ACTGG	2 cut(s)	289, 1111
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	978
BseCI	ATCGAT	1 cut(s)	1218
BseDI	CCNNGG	1 cut(s)	976
BseGI	GGATG	3 cut(s)	601, 703, 1099
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1400
BseMII	CTCAG	5 cut(s)	360, 560, 687, 741, 1136
BseNI	ACTGG	2 cut(s)	289, 1111
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	5 cut(s)	41, 72, 887, 1139, 1292
BsgI	GTGCAG	2 cut(s)	894, 1047
Bsh1236I	CGCG	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	1218
BsiSI	CCGG	4 cut(s)	149, 226, 341, 1059
BslFI	GGGAC	2 cut(s)	714, 1303
BslI	CCNNNNNNNGG	2 cut(s)	404, 1400
BsmAI	GTCTC	1 cut(s)	1155
BsmFI	GGGAC	2 cut(s)	714, 1303
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	340
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
Bsp1720I	GCTNAGC	1 cut(s)	750
BspCNI	CTCAG	5 cut(s)	361, 559, 688, 742, 1137
BspDI	ATCGAT	1 cut(s)	1218
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	147, 396
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	3 cut(s)	141, 180, 1370
BspTI	CTTAAG	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	1058
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	289, 1111
BssAI	RCCGGY	1 cut(s)	1058
BssECI	CCNNGG	1 cut(s)	976
BssMI	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	5 cut(s)	303, 383, 553, 810, 956
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	6 cut(s)	369, 546, 696, 750, 834, 1145
BstEII	GGTNACC	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	601, 703, 1099
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	8 cut(s)	136, 175, 181, 196, 1050, 1198, 1330, 1365
BstMAI	GTCTC	1 cut(s)	1155
BstMBI	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 830
BstNI	CCWGG	1 cut(s)	978
BstNSI	RCATGY	1 cut(s)	824
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	976
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	5 cut(s)	41, 72, 887, 1139, 1292
BstV2I	GAAGAC	1 cut(s)	1115
BstX2I	RGATCY	2 cut(s)	172, 1047
BstXI	CCANNNNNNTGG	1 cut(s)	1106
BstYI	RGATCY	2 cut(s)	172, 1047
Bsu15I	ATCGAT	1 cut(s)	1218
BsuI	GTATCC	1 cut(s)	773
BsuTUI	ATCGAT	1 cut(s)	1218
BtgZI	GCGATG	1 cut(s)	404
BtrI	CACGTC	2 cut(s)	1025, 1230
BtsCI	GGATG	3 cut(s)	601, 703, 1099
BtsI	GCAGTG	2 cut(s)	80, 821
BtsIMutI	CAGTG	4 cut(s)	80, 299, 558, 821
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	822
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	1058
Cfr13I	GGNCC	2 cut(s)	35, 914
ClaI	ATCGAT	1 cut(s)	1218
Csp6I	GTAC	3 cut(s)	21, 304, 957
CviAII	CATG	6 cut(s)	130, 200, 784, 821, 857, 1359
CviQI	GTAC	3 cut(s)	21, 304, 957
DdeI	CTNAG	6 cut(s)	369, 546, 696, 750, 834, 1145
DpnI	GATC	8 cut(s)	135, 174, 180, 195, 1049, 1197, 1329, 1364
DpnII	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
DraIII	CACNNNGTG	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	35, 914
Eco57I	CTGAAG	5 cut(s)	470, 665, 789, 933, 1308
Eco91I	GGTNACC	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	976
FaeI	CATG	6 cut(s)	133, 203, 787, 824, 860, 1362
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	2 cut(s)	714, 1303
FatI	CATG	6 cut(s)	129, 199, 783, 820, 856, 1358
FauNDI	CATATG	1 cut(s)	1093
FbaI	TGATCA	2 cut(s)	178, 193
Fnu4HI	GCNGC	5 cut(s)	30, 86, 876, 1153, 1281
FokI	GGATG	3 cut(s)	608, 690, 1086
Fsp4HI	GCNGC	5 cut(s)	30, 86, 876, 1153, 1281
FspBI	CTAG	4 cut(s)	24, 911, 1055, 1235
GluI	GCNGC	5 cut(s)	30, 86, 876, 1153, 1281
HapII	CCGG	4 cut(s)	149, 226, 341, 1059
Hin1II	CATG	6 cut(s)	133, 203, 787, 824, 860, 1362
HindIII	AAGCTT	1 cut(s)	482
HpaII	CCGG	4 cut(s)	149, 226, 341, 1059
HphI	GGTGA	4 cut(s)	285, 743, 1277, 1325
Hpy188III	TCNNGA	7 cut(s)	176, 200, 260, 341, 398, 473, 738
Hpy99I	CGWCG	1 cut(s)	1026
HpyAV	CCTTC	3 cut(s)	39, 282, 1332
HpyCH4III	ACNGT	5 cut(s)	303, 383, 553, 810, 956
HpyCH4IV	ACGT	2 cut(s)	1024, 1229
HpyCH4V	TGCA	8 cut(s)	671, 814, 860, 875, 1028, 1134, 1280, 1391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 830
HpyF3I	CTNAG	6 cut(s)	369, 546, 696, 750, 834, 1145
HpySE526I	ACGT	2 cut(s)	1024, 1229
Hsp92II	CATG	6 cut(s)	133, 203, 787, 824, 860, 1362
Kpn2I	TCCGGA	1 cut(s)	340
Ksp22I	TGATCA	2 cut(s)	178, 193
Kzo9I	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	5 cut(s)	41, 72, 887, 1139, 1292
LweI	GCATC	2 cut(s)	736, 1360
MaeI	CTAG	4 cut(s)	24, 911, 1055, 1235
MaeII	ACGT	2 cut(s)	1024, 1229
MaeIII	GTNAC	7 cut(s)	257, 291, 383, 553, 731, 899, 937
MalI	GATC	8 cut(s)	135, 174, 180, 195, 1049, 1197, 1329, 1364
MboI	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
MboII	GAAGA	4 cut(s)	212, 815, 1115, 1296
MfeI	CAATTG	1 cut(s)	1072
MflI	RGATCY	2 cut(s)	172, 1047
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	8 cut(s)	232, 250, 311, 686, 919, 1032, 1039, 1072
MlyI	GAGTC	5 cut(s)	257, 331, 728, 789, 1327
MmeI	TCCRAC	1 cut(s)	573
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	6 cut(s)	231, 480, 600, 690, 714, 789
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	4 cut(s)	149, 226, 341, 1059
MspR9I	CCNGG	1 cut(s)	978
MunI	CAATTG	1 cut(s)	1072
MvaI	CCWGG	1 cut(s)	978
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	66, 830
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
NlaIII	CATG	6 cut(s)	133, 203, 787, 824, 860, 1362
NlaIV	GGNNCC	2 cut(s)	147, 396
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	5 cut(s)	257, 291, 553, 731, 899
NspI	RCATGY	1 cut(s)	824
PaeI	GCATGC	1 cut(s)	824
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	6 cut(s)	51, 211, 424, 458, 1220, 1342
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	5 cut(s)	31, 87, 877, 1154, 1282
PleI	GAGTC	5 cut(s)	257, 331, 728, 788, 1326
PpsI	GAGTC	5 cut(s)	257, 331, 728, 788, 1326
Psp6I	CCWGG	1 cut(s)	976
PspEI	GGTNACC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	976
PspN4I	GGNNCC	2 cut(s)	147, 396
PspPI	GGNCC	2 cut(s)	35, 914
PsuI	RGATCY	2 cut(s)	172, 1047
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	22, 305, 958
RsaNI	GTAC	3 cut(s)	21, 304, 957
SaqAI	TTAA	6 cut(s)	231, 480, 600, 690, 714, 789
SatI	GCNGC	5 cut(s)	30, 86, 876, 1153, 1281
Sau3AI	GATC	8 cut(s)	133, 172, 178, 193, 1047, 1195, 1327, 1362
Sau96I	GGNCC	2 cut(s)	35, 914
SchI	GAGTC	5 cut(s)	257, 331, 728, 789, 1327
ScrFI	CCNGG	1 cut(s)	978
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	736, 1360
SfcI	CTRYAG	1 cut(s)	610
SinI	GGWCC	2 cut(s)	35, 914
SmlI	CTYRAG	2 cut(s)	140, 479
SmoI	CTYRAG	2 cut(s)	140, 479
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	8 cut(s)	232, 250, 311, 686, 919, 1032, 1039, 1072
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	4 cut(s)	24, 911, 1055, 1235
StyD4I	CCNGG	1 cut(s)	976
TaaI	ACNGT	5 cut(s)	303, 383, 553, 810, 956
TaiI	ACGT	2 cut(s)	1027, 1232
TaqI	TCGA	4 cut(s)	91, 1183, 1218, 1245
TasI	AATT	8 cut(s)	232, 250, 311, 686, 919, 1032, 1039, 1072
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	6 cut(s)	51, 211, 424, 458, 1220, 1342
Tru1I	TTAA	6 cut(s)	231, 480, 600, 690, 714, 789
Tru9I	TTAA	6 cut(s)	231, 480, 600, 690, 714, 789
TscAI	CASTG	4 cut(s)	87, 306, 558, 821
TseFI	GTSAC	5 cut(s)	257, 291, 553, 731, 899
TseI	GCWGC	5 cut(s)	29, 85, 875, 1152, 1280
Tsp45I	GTSAC	5 cut(s)	257, 291, 553, 731, 899
TspDTI	ATGAA	3 cut(s)	845, 1115, 1389
TspRI	CASTG	4 cut(s)	87, 306, 558, 821
Van91I	CCANNNNNTGG	1 cut(s)	404
Vha464I	CTTAAG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	35, 914
XapI	RAATTY	3 cut(s)	686, 919, 1039
XceI	RCATGY	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	4 cut(s)	24, 911, 1055, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.