Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002721

Physical Location & Seq

Genomic Coordinates Reverse (-)

22684359 .. 22689657

Gene Structure 5299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATCGGCTCAAGGCTCCGGCTCGGCTAATGATAGTTTCGGATCTTGATCATACAATGGTTGATCATCATGACAAGGAGAATCTTTCTCTTCTCCGGTTTAATTCTCTTTGGGAAGCCAATTATCGTCACGACTCTCTGCTGGTCTTTTCAACTGGAAGGTCACCGACACTGTACAAAGAATTGAGGAAAGAGAAACCTATGCTGACTCCGGATATAACAATAATGTCTGTGGGAACTGAGATAACTTACGGTAATGCGATGGTTCCAGATGATGGTTGGGTTGAGGTTCTGAATCAGAAGTGGGATAAGAACATTGTCAAAGAGGAATCAAGCAAGTTTCCTGAACTTAAGCTTCAGGCAGAAACAGAGCAACGGGCACACAAGGTTAGCTTTTATGTTGAGAAAGACAAGGCTCAGACAGTGACAAAGGCTCTTTCAGAGGCTTTGAAACAGCGTGGGTTGGATGTTAAGATAATCTATAGTGGAGGAATAGATTTGGATATATTGCCACAAGGTGCTGGAAAAGGACAAGCTCTTGCATATTTGCTTCAGAAATTTAAGACTGAGGGACATCCACCTGTTAATACTCTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTTAGTATCCCTGAAGTATATGGAGTCATGGTTAAGAACGCCCAAGAAGAACTGTTGCAGTGGCATGCTGAAAATGCTAAGGATAACAAAAAGATTATTCATGCAACAGAGAGATGTGCAGCTGGTATCATTCAAGCCATTGGTCACTTTAGTCTAGGTCCAAATTTGCCCCCCAGAGATGTTACAGATACTTCAGACTGTACGCTGGAAAATGCGAACCCTGGTCATAGTATAGTGGAGTTTTTCTTATTCTATGAGAAATGGCGACGTGCAGAAATTGAGAATTCAGAGATCTATCTAGCCGGTGTGAAAGCCAATTGTGTATGTTTCATATCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

S6PP S6PP_C

Protein Analysis

322

Amino Acids

36.18

Weight (kDa)

5.63

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	9 - 259	6.1e-102	Sucrose-6F-phosphate phosphohydrolase
Hydrolase_3	PF08282	99 - 232	1.3e-12	haloacid dehalogenase-like hydrolase
S6PP_C	PF08472	283 - 316	6.8e-09	Sucrose-6-phosphate phosphohydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51420 AT1G51420 AT1G51420 AT1G51420 AT2G35840 AT2G35840 AT2G35840 AT2G35840 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340 AT3G52340
fragaria_vesca	FvH4_6g20950 FvH4_6g20950
malus_domestica	MD12G1045400.v1.1 MD14G1044300.v1.1
prunus_persica	Prupe.7G089300_v2.0.a1 Prupe.7G089300_v2.0.a1
pyrus_communis	pycom12g03920 pycom14g03750
rosa_chinensis	RchiOBHm_Chr3g0477361
rosa_laevigata	RLG00000023729
rosa_multiflora	Rmu_sc0006369.1_g000008
rosa_roxburghii	Rroxscaffold_6G00404250 Rroxscaffold_6G00404730 Rroxscaffold_7G00202730
rosa_rugosa	Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700 Rorug03G0159700
rosa_samantha	Rh3AG210200 Rh3BG243600 Rh3CG237500 Rh3DG237100
rosa_wichuraiana	Rw0G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	2 cut(s)	12, 51
AcsI	RAATTY	3 cut(s)	557, 790, 910
AcuI	CTGAAG	4 cut(s)	341, 536, 660, 804
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	176, 829
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	153, 451, 761
AjiI	CACGTC	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	5 cut(s)	355, 393, 536, 625, 749
AluI	AGCT	5 cut(s)	355, 393, 536, 625, 749
AlwI	GGATC	2 cut(s)	12, 51
Aor13HI	TCCGGA	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	3 cut(s)	557, 790, 910
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	156, 614
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	2 cut(s)	256, 269
BciT130I	CCWGG	1 cut(s)	849
BciVI	GTATCC	1 cut(s)	644
BclI	TGATCA	2 cut(s)	49, 64
BfaI	CTAG	2 cut(s)	782, 926
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	918
BisI	GCNGC	1 cut(s)	747
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	748
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	18, 267
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	2 cut(s)	96, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	849
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	2 cut(s)	472, 574
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	4 cut(s)	231, 431, 558, 612
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	758
BsgI	GTGCAG	2 cut(s)	765, 918
BsiSI	CCGG	4 cut(s)	20, 97, 212, 930
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	5 cut(s)	4, 43, 49, 64, 918
Bsp1720I	GCTNAGC	1 cut(s)	621
BspCNI	CTCAG	4 cut(s)	232, 430, 559, 613
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	2 cut(s)	70, 965
BspLI	GGNNCC	2 cut(s)	18, 267
BspPI	GGATC	2 cut(s)	12, 51
BspTI	CTTAAG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	5 cut(s)	4, 43, 49, 64, 918
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	5 cut(s)	174, 254, 424, 681, 827
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	240, 417, 567, 621, 705
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	472, 574
BstKTI	GATC	5 cut(s)	7, 46, 52, 67, 921
BstMBI	GATC	5 cut(s)	4, 43, 49, 64, 918
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	1 cut(s)	849
BstNSI	RCATGY	1 cut(s)	695
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	847
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	758
BstX2I	RGATCY	2 cut(s)	43, 918
BstYI	RGATCY	2 cut(s)	43, 918
BsuI	GTATCC	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	275
BtrI	CACGTC	1 cut(s)	896
BtsCI	GGATG	2 cut(s)	472, 574
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	170, 429, 692
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	2 cut(s)	70, 965
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	2 cut(s)	175, 828
CviAII	CATG	5 cut(s)	71, 655, 692, 728, 966
CviQI	GTAC	2 cut(s)	175, 828
DdeI	CTNAG	5 cut(s)	240, 417, 567, 621, 705
DpnI	GATC	5 cut(s)	6, 45, 51, 66, 920
DpnII	GATC	5 cut(s)	4, 43, 49, 64, 918
DraIII	CACNNNGTG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	341, 536, 660, 804
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	847
FaeI	CATG	5 cut(s)	74, 658, 695, 731, 969
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	70, 654, 691, 727, 965
FbaI	TGATCA	2 cut(s)	49, 64
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	2 cut(s)	479, 561
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	2 cut(s)	782, 926
GluI	GCNGC	1 cut(s)	747
HapII	CCGG	4 cut(s)	20, 97, 212, 930
Hin1II	CATG	5 cut(s)	74, 658, 695, 731, 969
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	7 cut(s)	82, 134, 208, 295, 329, 605, 651
HpaII	CCGG	4 cut(s)	20, 97, 212, 930
HphI	GGTGA	2 cut(s)	156, 614
Hpy188I	TCNGA	8 cut(s)	43, 294, 300, 420, 442, 555, 823, 916
Hpy188III	TCNNGA	8 cut(s)	47, 71, 131, 212, 269, 344, 609, 966
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	5 cut(s)	174, 254, 424, 681, 827
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	5 cut(s)	542, 685, 731, 746, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	240, 417, 567, 621, 705
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	5 cut(s)	74, 658, 695, 731, 969
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	49, 64
Kzo9I	GATC	5 cut(s)	4, 43, 49, 64, 918
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	782, 926
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	6 cut(s)	128, 162, 424, 602, 770, 808
MalI	GATC	5 cut(s)	6, 45, 51, 66, 920
MboI	GATC	5 cut(s)	4, 43, 49, 64, 918
MboII	GAAGA	2 cut(s)	83, 686
MfeI	CAATTG	1 cut(s)	943
MflI	RGATCY	2 cut(s)	43, 918
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
MlyI	GAGTC	4 cut(s)	128, 202, 599, 660
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	180, 280, 319, 436, 482, 562
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	4 cut(s)	20, 97, 212, 930
MspR9I	CCNGG	1 cut(s)	849
MunI	CAATTG	1 cut(s)	943
MvaI	CCWGG	1 cut(s)	849
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeII	GATC	5 cut(s)	4, 43, 49, 64, 918
NlaIII	CATG	5 cut(s)	74, 658, 695, 731, 969
NlaIV	GGNNCC	2 cut(s)	18, 267
NmeAIII	GCCGAG	1 cut(s)	4
NmuCI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	2 cut(s)	70, 965
PfeI	GAWTC	3 cut(s)	82, 295, 329
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	4 cut(s)	128, 202, 599, 659
PpsI	GAGTC	4 cut(s)	128, 202, 599, 659
Psp6I	CCWGG	1 cut(s)	847
PspEI	GGTNACC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	2 cut(s)	18, 267
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	43, 918
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	176, 829
RsaNI	GTAC	2 cut(s)	175, 828
SaqAI	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	5 cut(s)	4, 43, 49, 64, 918
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	4 cut(s)	128, 202, 599, 660
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	11, 350
SmoI	CTYRAG	2 cut(s)	11, 350
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
SspMI	CTAG	2 cut(s)	782, 926
StyD4I	CCNGG	1 cut(s)	847
TaaI	ACNGT	5 cut(s)	174, 254, 424, 681, 827
TaiI	ACGT	1 cut(s)	898
TasI	AATT	8 cut(s)	103, 121, 182, 557, 790, 903, 910, 943
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	82, 295, 329
Tru1I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
Tru9I	TTAA	6 cut(s)	102, 351, 471, 561, 585, 660
TscAI	CASTG	3 cut(s)	177, 429, 692
TseFI	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	5 cut(s)	128, 162, 424, 602, 770
TspDTI	ATGAA	2 cut(s)	716, 946
TspRI	CASTG	3 cut(s)	177, 429, 692
Van91I	CCANNNNNTGG	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	3 cut(s)	557, 790, 910
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	2 cut(s)	782, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.