AT1G51560

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008585
Physical Location & Seq
Reverse (-)
19119606 .. 19122038
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51560.1

Sequence Viewer

Length: 1179 bp
ATGGATGCTGCTATCTTTACTTCCGTATACGTTTGCAATATACCAAAGACGAAGAAGGCTTTCTTCAACCCGAATCCGCCTGCTCTATCTTCGTCTTCTTGTTGGCTCTGCAATTCGCAAGCCAAGCAAATCATAAAACTGAGAATCAGGGAAGGCTCGAATCAGGGGCTTCTTCGTGTACATGCTCTGTTTAACAACGAGGAGGCATCAAGTGAAAGTGAAGATAAGAATGGGTTTGGTTTGCTACCTGCGGATATTTTCTCTTTGCCTCAGGAGAAGTTTGGAAGTAATGTAAGTGGTGAAAAGGATAGTGAAAATATAATTGATGTAGAGACATCTCTTGCGGTTCCTCATGGTGGAGGAACTCGAGCTGGGCTCTTTAGAACTCCGATTTCTGGTGGTGTTCAAAGCGCAACCTCTGCTCACGGTTTACCTCGACCTGCTTTAGCTGTTAGGAACTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACTGTGATGTCTAAAATGCACCATCGTAGAGAAGGGTACCCATTTGGATCGTTGGTAGATTTTGCACCTGATCCGATGGGGCACCCAATATTTTCATTTTCACCGTTGGCTATTCACACTCGGAATATCTTAGCTGAACCTAGATGCACCCTCGTTGTTCAGATACCAGGATGGAGTTGCTTATCGAATGCAAGAGTAACATTATTCGGCGATGTCTACCCATTGCCAGAAGAGCAGCAAGAATGGGCCCATAAGCAGTATATGTTGAAGCATCACCAAGGACCTTCCCAACAATGGGGAAACTTTCACTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGTTTTGGCACTGTCGCGTGGATCAATGTCAATGAGTACGAGACTCTTCAGCCAGATAAGATAGCTGTTGATGGAGGTGAGCAAAATCTGAAGGAACTTAATGCAATCTTCTCAAAGCCACTTAGAGAGTTATTGTCTAGTGAAGCCGAGCTAGACGATGCTGCTATCATTTCTATAGATAGCAAAGGGATTGATATAAGGGTTCGTCAAGGTGCTCAGTTTAAGATACAAAGGCTAGCCTTTGAGGAAAGTCATGGTGTTGAGACTTTAGAAGAAGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGCAAGTTGCACAATTTGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

392

Amino Acids

43.58

Weight (kDa)

6.4

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 151 - 295 2.3e-18 CREG, beta-barrel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 256, 448
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 528, 573
AccI GTMKAC 2 cut(s) 27, 708
AccII CGCG 1 cut(s) 860
AciI CCGC 3 cut(s) 77, 251, 344
AclWI GGATC 3 cut(s) 547, 557, 872
AcuI CTGAAG 2 cut(s) 875, 953
AfaI GTAC 3 cut(s) 180, 530, 881
AfiI CCNNNNNNNGG 4 cut(s) 356, 395, 786, 787
AgsI TTSAA 3 cut(s) 67, 407, 760
AjnI CCWGG 2 cut(s) 473, 658
AluBI AGCT 5 cut(s) 371, 449, 626, 908, 994
AluI AGCT 5 cut(s) 371, 449, 626, 908, 994
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 3 cut(s) 326, 878, 1100
AlwI GGATC 3 cut(s) 547, 557, 872
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 2 cut(s) 471, 738
ApaI GGGCCC 1 cut(s) 742
ApeKI GCWGC 3 cut(s) 8, 727, 1004
Asp700I GAANNNNTTC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 3 cut(s) 738, 739, 773
AsuHPI GGTGA 4 cut(s) 311, 585, 758, 932
AsuNHI GCTAGC 1 cut(s) 1078
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 1 cut(s) 773
AxyI CCTNAGG 1 cut(s) 270
BaeGI GKGCMC 2 cut(s) 576, 742
BanI GGYRCC 2 cut(s) 528, 573
BanII GRGCYC 2 cut(s) 378, 742
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 2 cut(s) 739, 991
BccI CCATC 5 cut(s) 457, 522, 562, 657, 908
BciT130I CCWGG 2 cut(s) 475, 660
BcoDI GTCTC 3 cut(s) 326, 878, 1100
BfaI CTAG 4 cut(s) 633, 981, 995, 1079
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 2 cut(s) 256, 448
BisI GCNGC 3 cut(s) 9, 728, 1005
BlsI GCNGC 3 cut(s) 10, 729, 1006
Bme1390I CCNGG 2 cut(s) 475, 660
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 3 cut(s) 738, 739, 773
BmiI GGNNCC 4 cut(s) 348, 530, 575, 740
BmrFI CCNGG 2 cut(s) 475, 660
BmsI GCATC 4 cut(s) 215, 626, 772, 991
BmtI GCTAGC 1 cut(s) 1082
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 360, 392
BsaJI CCNNGG 1 cut(s) 769
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 395, 786, 787
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 2 cut(s) 475, 660
BseDI CCNNGG 1 cut(s) 769
BseGI GGATG 2 cut(s) 10, 668
BseLI CCNNNNNNNGG 4 cut(s) 356, 395, 786, 787
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 3 cut(s) 131, 284, 1073
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 2 cut(s) 576, 742
BseXI GCAGC 2 cut(s) 739, 991
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 1113
Bsh1236I CGCG 1 cut(s) 860
BshFI GGCC 2 cut(s) 473, 740
BshNI GGYRCC 2 cut(s) 528, 573
BsiHKAI GWGCWC 1 cut(s) 1060
BsiHKCI CYCGRG 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 356, 395, 786, 787
BsmAI GTCTC 3 cut(s) 326, 878, 1100
BsmI GAATGC 2 cut(s) 685, 816
BsnI GGCC 2 cut(s) 473, 740
BsoBI CYCGRG 1 cut(s) 366
Bsp120I GGGCCC 1 cut(s) 738
Bsp1286I GDGCHC 4 cut(s) 378, 576, 742, 1060
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 539, 562, 864
BspACI CCGC 3 cut(s) 77, 251, 344
BspANI GGCC 2 cut(s) 473, 740
BspCNI CTCAG 3 cut(s) 132, 283, 1072
BspFNI CGCG 1 cut(s) 860
BspLI GGNNCC 4 cut(s) 348, 530, 575, 740
BspMI ACCTGC 2 cut(s) 256, 448
BspOI GCTAGC 1 cut(s) 1082
BspPI GGATC 3 cut(s) 547, 557, 872
BspQI GCTCTTC 1 cut(s) 717
BspT107I GGYRCC 2 cut(s) 528, 573
BsrDI GCAATG 1 cut(s) 713
BsrGI TGTACA 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 769
BssMI GATC 3 cut(s) 539, 562, 864
BssNAI GTATAC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 769
Bst1107I GTATAC 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 475, 660
Bst4CI ACNGT 5 cut(s) 428, 496, 597, 856, 1134
Bst6I CTCTTC 2 cut(s) 717, 894
BstAPI GCANNNNNTGC 2 cut(s) 419, 1168
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 4 cut(s) 81, 120, 471, 1080
BstDEI CTNAG 5 cut(s) 140, 270, 622, 965, 1059
BstF5I GGATG 2 cut(s) 10, 668
BstFNI CGCG 1 cut(s) 860
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 3 cut(s) 542, 565, 867
BstMAI GTCTC 3 cut(s) 326, 878, 1100
BstMBI GATC 3 cut(s) 539, 562, 864
BstMWI GCNNNNNNNGC 6 cut(s) 124, 419, 479, 724, 1127, 1168
BstNI CCWGG 2 cut(s) 475, 660
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 473, 658
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 576, 742
BstUI CGCG 1 cut(s) 860
BstV1I GCAGC 2 cut(s) 739, 991
BstV2I GAAGAC 1 cut(s) 87
BstZ17I GTATAC 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 473, 740
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 2 cut(s) 10, 668
BtsIMutI CAGTG 3 cut(s) 492, 852, 1130
BveI ACCTGC 2 cut(s) 256, 448
Cac8I GCNNGC 4 cut(s) 81, 120, 471, 1080
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 738, 739, 773
Csp6I GTAC 3 cut(s) 179, 529, 880
CviAII CATG 3 cut(s) 182, 353, 1097
CviQI GTAC 3 cut(s) 179, 529, 880
DdeI CTNAG 5 cut(s) 140, 270, 622, 965, 1059
DpnI GATC 3 cut(s) 541, 564, 866
DpnII GATC 3 cut(s) 539, 562, 864
Eam1104I CTCTTC 2 cut(s) 717, 894
EarI CTCTTC 2 cut(s) 717, 894
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 769
Eco24I GRGCYC 2 cut(s) 378, 742
Eco47I GGWCC 1 cut(s) 773
Eco57I CTGAAG 2 cut(s) 875, 953
Eco81I CCTNAGG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 2 cut(s) 473, 658
EcoT14I CCWWGG 1 cut(s) 769
EcoT38I GRGCYC 2 cut(s) 378, 742
ErhI CCWWGG 1 cut(s) 769
FaeI CATG 3 cut(s) 185, 356, 1100
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 3 cut(s) 181, 352, 1096
FblI GTMKAC 2 cut(s) 27, 708
Fnu4HI GCNGC 3 cut(s) 9, 728, 1005
FokI GGATG 2 cut(s) 17, 675
FriOI GRGCYC 2 cut(s) 378, 742
Fsp4HI GCNGC 3 cut(s) 9, 728, 1005
FspBI CTAG 4 cut(s) 633, 981, 995, 1079
GlaI GCGC 1 cut(s) 412
GluI GCNGC 3 cut(s) 9, 728, 1005
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 2 cut(s) 473, 740
HhaI GCGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 185, 356, 1100
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 4 cut(s) 73, 144, 160, 886
HphI GGTGA 4 cut(s) 311, 585, 758, 932
Hpy166II GTNNAC 4 cut(s) 28, 179, 431, 709
Hpy188I TCNGA 5 cut(s) 390, 567, 615, 654, 933
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 4 cut(s) 28, 179, 431, 709
HpyAV CCTTC 6 cut(s) 49, 146, 518, 786, 928, 1144
HpyCH4III ACNGT 5 cut(s) 428, 496, 597, 856, 1134
HpyCH4IV ACGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 419, 479, 724, 1127, 1168
HpyF3I CTNAG 5 cut(s) 140, 270, 622, 965, 1059
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 3 cut(s) 185, 356, 1100
HspAI GCGC 1 cut(s) 411
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 3 cut(s) 539, 562, 864
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 2 cut(s) 739, 991
LweI GCATC 4 cut(s) 215, 626, 772, 991
MaeI CTAG 4 cut(s) 633, 981, 995, 1079
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 688
MalI GATC 3 cut(s) 541, 564, 866
MboI GATC 3 cut(s) 539, 562, 864
MhlI GDGCHC 4 cut(s) 378, 576, 742, 1060
MluCI AATT 3 cut(s) 112, 321, 1165
MlyI GAGTC 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 192, 942, 1065
MslI CAYNNNNRTG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 475, 660
Mva1269I GAATGC 2 cut(s) 685, 816
MvaI CCWGG 2 cut(s) 475, 660
MvnI CGCG 1 cut(s) 860
MwoI GCNNNNNNNGC 6 cut(s) 124, 419, 479, 724, 1127, 1168
NdeII GATC 3 cut(s) 539, 562, 864
NheI GCTAGC 1 cut(s) 1078
NlaIII CATG 3 cut(s) 185, 356, 1100
NlaIV GGNNCC 4 cut(s) 348, 530, 575, 740
NmeAIII GCCGAG 1 cut(s) 1015
NspI RCATGY 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 2 cut(s) 685, 816
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 3 cut(s) 73, 144, 160
PkrI GCNGC 3 cut(s) 10, 729, 1006
PleI GAGTC 1 cut(s) 880
PpsI GAGTC 1 cut(s) 880
PpuMI RGGWCCY 1 cut(s) 773
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 2 cut(s) 473, 658
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 2 cut(s) 473, 658
PspN4I GGNNCC 4 cut(s) 348, 530, 575, 740
PspOMI GGGCCC 1 cut(s) 738
PspPI GGNCC 3 cut(s) 738, 739, 773
PspPPI RGGWCCY 1 cut(s) 773
PspXI VCTCGAGB 1 cut(s) 366
RsaI GTAC 3 cut(s) 180, 530, 881
RsaNI GTAC 3 cut(s) 179, 529, 880
RseI CAYNNNNRTG 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 192, 942, 1065
SatI GCNGC 3 cut(s) 9, 728, 1005
Sau3AI GATC 3 cut(s) 539, 562, 864
Sau96I GGNCC 3 cut(s) 738, 739, 773
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 2 cut(s) 475, 660
SduI GDGCHC 4 cut(s) 378, 576, 742, 1060
SfaNI GCATC 4 cut(s) 215, 626, 772, 991
SfcI CTRYAG 1 cut(s) 1017
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 3 cut(s) 112, 321, 1165
SsiI CCGC 3 cut(s) 77, 251, 344
SspI AATATT 1 cut(s) 582
SspMI CTAG 4 cut(s) 633, 981, 995, 1079
StyD4I CCNGG 2 cut(s) 473, 658
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 5 cut(s) 428, 496, 597, 856, 1134
TaiI ACGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 158, 367, 436, 677
TasI AATT 3 cut(s) 112, 321, 1165
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 3 cut(s) 73, 144, 160
Tru1I TTAA 3 cut(s) 192, 942, 1065
Tru9I TTAA 3 cut(s) 192, 942, 1065
TscAI CASTG 3 cut(s) 499, 859, 1137
TseI GCWGC 3 cut(s) 8, 727, 1004
TspDTI ATGAA 2 cut(s) 576, 826
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 3 cut(s) 499, 859, 1137
VpaK11BI GGWCC 1 cut(s) 773
XceI RCATGY 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 366
XmiI GTMKAC 2 cut(s) 27, 708
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 633, 981, 995, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.