Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Reverse (-)

29185373 .. 29190078

Gene Structure 4706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37120.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAAGCCCTGGCGAGCTCTGTGTTCATACCCGATACCTTCCCAGTTCATAACAACCACAACCCAACTCTAATCAGAACACCCAATAACCCAACTGGGTCTCTCAAACTCACCCACACCTCCCATTTTCTCGGCCTCCGTGCTCATGCTCTCTCCGGCGAGGCCTCCGGCTCCGGTGACAATGAAGATGCTGGGCCCCTCAGTAATGGCTTTGGCTTGGATAGTCTCTCTTTGTCTCAGGTAGTAATGTGTGGGTGGATCAAATGGCTACTTCAGAGTTTTAATGACCTGTATTTTGTGATGAAGGGTAATTTAAATCACCATGGTAGTGGTGAGAAGGGTGTGGATAAGGCATTTAATGTGGACATGCCTCTTACATCCCATTCTGCAAATGGAGCAGGCGGAACAAGAACTGGGCTCTTTAGGACTCCAATTTCTGGCGGGGTGCAGAGTGCAACTTCTGCTCATGGTTTACCTCGTCCCTCCTTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATCTGTGCACTGTGATGTCGCGCATGCACCATCGACGAGAAGGATATCCATTTGGTTCTCTGGTTGATTTTGCACCTGATTCAATGGGCCATCCTATCTTTTCATTTTCCCCATTGGCCATCCACACACGGAATTTGTTAGCAAATCCAAGATGCACGCTTGTTGTGCAGATTCCTGGATGGAGTGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGGATCAACAGGAATGGGCTCATAAGCAATACATTGCAAAACATCAACAGGGGCCTTCTCAGCAATGGGGAAATTTCTACTACTTCAGGATGCAGAACATAAGTGACATTTATTTCATTGGTGGCTTTGGGACTGTGGCTTGGGTTGATGTAAAAGAATACGAGGCTCTTCAGCCTGATAAGATTGCAGTCGATGGAGGGGAGCAACACCTGAAGGAACTTAATGCAATCTTTTCGAAGCCCCTAAAAGAGCTACTGTCCCTTGAATCCGAGGTGGATGATGCTGCTTTCATATCTATAGACAGCAAAGGAACAGATATTCGGGTCCGTCAGGGTGCACAGTTCAACATTCAGAGGCTATCATTTGAGGTAGGCCAGTCTGTTGAGACGTTAGAGGAAGCCAAGGTTGCTCTTAGGAAACTTATAAACAAAGGCCGAGTGCATAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

405

Amino Acids

44.45

Weight (kDa)

6.65

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	144 - 288	3e-17	CREG, beta-barrel
PNPOx_N	PF01243	144 - 252	7.3e-07	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1187
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	1 cut(s)	547
AciI	CCGC	2 cut(s)	402, 441
AclWI	GGATC	2 cut(s)	266, 774
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	658, 835
AcuI	CTGAAG	4 cut(s)	257, 832, 917, 995
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	609, 1028, 1108
AjnI	CCWGG	2 cut(s)	9, 700
AluBI	AGCT	4 cut(s)	18, 491, 1015, 1209
AluI	AGCT	4 cut(s)	18, 491, 1015, 1209
Alw21I	GWGCWC	4 cut(s)	20, 145, 536, 1102
Alw26I	GTCTC	4 cut(s)	105, 230, 240, 1142
Alw44I	GTGCAC	2 cut(s)	532, 1098
AlwI	GGATC	2 cut(s)	266, 774
AoxI	GGCC	9 cut(s)	133, 162, 194, 513, 613, 642, 815, 1135, 1195
ApaI	GGGCCC	1 cut(s)	198
ApaLI	GTGCAC	2 cut(s)	532, 1098
ApeKI	GCWGC	1 cut(s)	1046
ApoI	RAATTY	2 cut(s)	658, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	5 cut(s)	194, 195, 613, 815, 1087
AsuHPI	GGTGA	5 cut(s)	103, 188, 311, 344, 755
AsuII	TTCGAA	1 cut(s)	998
AvaII	GGWCC	1 cut(s)	1087
BaeGI	GKGCMC	3 cut(s)	198, 536, 1102
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	4 cut(s)	20, 198, 420, 784
Bbv12I	GWGCWC	4 cut(s)	20, 145, 536, 1102
BbvI	GCAGC	1 cut(s)	1033
BccI	CCATC	5 cut(s)	564, 624, 653, 699, 950
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	2 cut(s)	11, 702
BcoDI	GTCTC	4 cut(s)	105, 230, 240, 1142
BfmI	CTRYAG	1 cut(s)	1059
BisI	GCNGC	1 cut(s)	1047
BlsI	GCNGC	1 cut(s)	1048
Bme1390I	CCNGG	2 cut(s)	11, 702
Bme18I	GGWCC	1 cut(s)	1087
BmgT120I	GGNCC	5 cut(s)	194, 195, 613, 815, 1087
BmiI	GGNNCC	5 cut(s)	172, 196, 197, 816, 1088
BmrFI	CCNGG	2 cut(s)	11, 702
BmrI	ACTGGG	3 cut(s)	38, 105, 423
BmsI	GCATC	4 cut(s)	178, 668, 843, 1033
BmuI	ACTGGG	3 cut(s)	38, 105, 423
Bpu10I	CCTNAGC	1 cut(s)	487
Bpu14I	TTCGAA	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	9, 322, 1032, 1164
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	4 cut(s)	44, 100, 418, 1138
Bse3DI	GCAATG	2 cut(s)	795, 833
BseBI	CCWGG	2 cut(s)	11, 702
BseDI	CCNNGG	4 cut(s)	9, 322, 1032, 1164
BseGI	GGATG	6 cut(s)	377, 616, 645, 710, 858, 1045
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	2 cut(s)	795, 833
BseMII	CTCAG	3 cut(s)	214, 251, 836
BseNI	ACTGG	4 cut(s)	44, 100, 418, 1138
BseSI	GKGCMC	3 cut(s)	198, 536, 1102
BseXI	GCAGC	1 cut(s)	1033
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	2 cut(s)	467, 713
Bsh1236I	CGCG	1 cut(s)	547
BshFI	GGCC	9 cut(s)	135, 164, 196, 515, 615, 644, 817, 1137, 1197
BsiHKAI	GWGCWC	4 cut(s)	20, 145, 536, 1102
BsiSI	CCGG	3 cut(s)	156, 168, 174
BslFI	GGGAC	3 cut(s)	465, 907, 1006
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	4 cut(s)	105, 230, 240, 1142
BsmBI	CGTCTC	1 cut(s)	1142
BsmFI	GGGAC	3 cut(s)	465, 907, 1006
BsnI	GGCC	9 cut(s)	135, 164, 196, 515, 615, 644, 817, 1137, 1197
Bso31I	GGTCTC	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	998
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	7 cut(s)	20, 145, 198, 420, 536, 784, 1102
Bsp143I	GATC	2 cut(s)	258, 766
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	2 cut(s)	402, 441
BspANI	GGCC	9 cut(s)	135, 164, 196, 515, 615, 644, 817, 1137, 1197
BspCNI	CTCAG	3 cut(s)	213, 250, 835
BspFNI	CGCG	1 cut(s)	547
BspLI	GGNNCC	5 cut(s)	172, 196, 197, 816, 1088
BspPI	GGATC	2 cut(s)	266, 774
BspQI	GCTCTTC	1 cut(s)	936
BspT104I	TTCGAA	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	795, 833
BsrI	ACTGG	4 cut(s)	44, 100, 418, 1138
BssECI	CCNNGG	4 cut(s)	9, 322, 1032, 1164
BssMI	GATC	2 cut(s)	258, 766
BssT1I	CCWWGG	2 cut(s)	322, 1164
Bst2UI	CCWGG	2 cut(s)	11, 702
Bst4CI	ACNGT	4 cut(s)	538, 898, 1020, 1104
Bst6I	CTCTTC	1 cut(s)	936
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	16, 400, 513, 551, 683
BstDEI	CTNAG	5 cut(s)	200, 237, 487, 822, 1175
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	6 cut(s)	377, 616, 645, 710, 858, 1045
BstFNI	CGCG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	2 cut(s)	261, 769
BstMAI	GTCTC	4 cut(s)	105, 230, 240, 1142
BstMBI	GATC	2 cut(s)	258, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 461, 521, 691, 823, 1169
BstNI	CCWGG	2 cut(s)	11, 702
BstNSI	RCATGY	2 cut(s)	370, 553
BstPI	GGTNACC	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	9, 700
BstSFI	CTRYAG	1 cut(s)	1059
BstSLI	GKGCMC	3 cut(s)	198, 536, 1102
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	1033
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	9 cut(s)	135, 164, 196, 515, 615, 644, 817, 1137, 1197
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	6 cut(s)	377, 616, 645, 710, 858, 1045
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	5 cut(s)	16, 400, 513, 551, 683
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	5 cut(s)	194, 195, 613, 815, 1087
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	5 cut(s)	146, 323, 367, 467, 550
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	5 cut(s)	200, 237, 487, 822, 1175
DpnI	GATC	2 cut(s)	260, 768
DpnII	GATC	2 cut(s)	258, 766
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
EciI	GGCGGA	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	322, 1164
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	4 cut(s)	20, 198, 420, 784
Eco31I	GGTCTC	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	1087
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	4 cut(s)	257, 832, 917, 995
Eco91I	GGTNACC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	195, 815
EcoO65I	GGTNACC	1 cut(s)	730
EcoRII	CCWGG	2 cut(s)	9, 700
EcoRV	GATATC	1 cut(s)	572
EcoT14I	CCWWGG	2 cut(s)	322, 1164
EcoT38I	GRGCYC	4 cut(s)	20, 198, 420, 784
ErhI	CCWWGG	2 cut(s)	322, 1164
Esp3I	CGTCTC	1 cut(s)	1142
FaeI	CATG	5 cut(s)	149, 326, 370, 470, 553
FaqI	GGGAC	3 cut(s)	465, 907, 1006
FatI	CATG	5 cut(s)	145, 322, 366, 466, 549
FauI	CCCGC	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	1 cut(s)	1047
FokI	GGATG	6 cut(s)	364, 603, 632, 717, 865, 1052
FriOI	GRGCYC	4 cut(s)	20, 198, 420, 784
Fsp4HI	GCNGC	1 cut(s)	1047
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	1 cut(s)	1047
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	9 cut(s)	135, 164, 196, 515, 615, 644, 817, 1137, 1197
HapII	CCGG	3 cut(s)	156, 168, 174
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	5 cut(s)	149, 326, 370, 470, 553
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HinfI	GANTC	4 cut(s)	427, 605, 697, 1028
HpaII	CCGG	3 cut(s)	156, 168, 174
HphI	GGTGA	5 cut(s)	103, 188, 311, 344, 755
Hpy166II	GTNNAC	5 cut(s)	364, 473, 534, 751, 1100
Hpy188I	TCNGA	4 cut(s)	77, 276, 1033, 1116
Hpy188III	TCNNGA	2 cut(s)	761, 850
Hpy8I	GTNNAC	5 cut(s)	364, 473, 534, 751, 1100
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	6 cut(s)	49, 298, 331, 560, 828, 970
HpyCH4III	ACNGT	4 cut(s)	538, 898, 1020, 1104
HpyCH4IV	ACGT	1 cut(s)	1151
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 461, 521, 691, 823, 1169
HpyF3I	CTNAG	5 cut(s)	200, 237, 487, 822, 1175
HpySE526I	ACGT	1 cut(s)	1151
Hsp92II	CATG	5 cut(s)	149, 326, 370, 470, 553
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	258, 766
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	4 cut(s)	176, 395, 508, 964
Lsp1109I	GCAGC	1 cut(s)	1033
LweI	GCATC	4 cut(s)	178, 668, 843, 1033
MaeII	ACGT	1 cut(s)	1151
MaeIII	GTNAC	3 cut(s)	176, 730, 866
MalI	GATC	2 cut(s)	260, 768
MboI	GATC	2 cut(s)	258, 766
MboII	GAAGA	2 cut(s)	197, 923
MhlI	GDGCHC	7 cut(s)	20, 145, 198, 420, 536, 784, 1102
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	4 cut(s)	310, 432, 658, 835
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	1 cut(s)	421
Mox20I	TGGCCA	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	4 cut(s)	282, 314, 357, 984
MslI	CAYNNNNRTG	2 cut(s)	327, 539
Msp20I	TGGCCA	1 cut(s)	644
MspI	CCGG	3 cut(s)	156, 168, 174
MspR9I	CCNGG	2 cut(s)	11, 702
MvaI	CCWGG	2 cut(s)	11, 702
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	6 cut(s)	395, 461, 521, 691, 823, 1169
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	258, 766
NlaIII	CATG	5 cut(s)	149, 326, 370, 470, 553
NlaIV	GGNNCC	5 cut(s)	172, 196, 197, 816, 1088
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	176, 866
NspI	RCATGY	2 cut(s)	370, 553
NspV	TTCGAA	1 cut(s)	998
PaeI	GCATGC	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	936
PfeI	GAWTC	3 cut(s)	605, 697, 1028
PflMI	CCANNNNNTGG	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	700
PkrI	GCNGC	1 cut(s)	1048
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PsiI	TTATAA	1 cut(s)	1187
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	9, 700
PspEI	GGTNACC	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	9, 700
PspN4I	GGNNCC	5 cut(s)	172, 196, 197, 816, 1088
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	5 cut(s)	194, 195, 613, 815, 1087
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	2 cut(s)	327, 539
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	282, 314, 357, 984
SatI	GCNGC	1 cut(s)	1047
Sau3AI	GATC	2 cut(s)	258, 766
Sau96I	GGNCC	5 cut(s)	194, 195, 613, 815, 1087
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	11, 702
SduI	GDGCHC	7 cut(s)	20, 145, 198, 420, 536, 784, 1102
SfaNI	GCATC	4 cut(s)	178, 668, 843, 1033
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	998
SinI	GGWCC	1 cut(s)	1087
SmiI	ATTTAAAT	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	327, 539
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	4 cut(s)	310, 432, 658, 835
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	402, 441
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	9, 700
StyI	CCWWGG	2 cut(s)	322, 1164
SwaI	ATTTAAAT	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	538, 898, 1020, 1104
TaiI	ACGT	1 cut(s)	1154
TaqI	TCGA	3 cut(s)	559, 954, 998
TasI	AATT	4 cut(s)	310, 432, 658, 835
TfiI	GAWTC	3 cut(s)	605, 697, 1028
Tru1I	TTAA	4 cut(s)	282, 314, 357, 984
Tru9I	TTAA	4 cut(s)	282, 314, 357, 984
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	2 cut(s)	176, 866
TseI	GCWGC	1 cut(s)	1046
Tsp45I	GTSAC	2 cut(s)	176, 866
TspDTI	ATGAA	7 cut(s)	16, 38, 198, 317, 618, 868, 1042
TspGWI	ACGGA	3 cut(s)	128, 670, 1079
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	2 cut(s)	532, 1098
VpaK11BI	GGWCC	1 cut(s)	1087
XapI	RAATTY	2 cut(s)	658, 835
XceI	RCATGY	2 cut(s)	370, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.