Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401521.1

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1100

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtgtggatgcatcaaatggctacttcagagttttaatgacctgtattttgtgatgaagggtaatttaaatcaccgtgaaagtggtgagaaggatgtggatgaggcatttaatgtagacagttctcctacatcccattctgcaagtggagcaggaggaacaagagctgggctctttaggactccaatttctggcggggtgcagagtgcaacttcagctcatggtttacctcgtccgtccctagctgtacgcaatcttatggagcaggccagatttgctcatttgtgcactgtgatgtcacgcatgcaccatcgacgagaaggatatccatttggttcgctggttgattttgcacctgattcaatgggccatcctatcttttcgttttccccattggccatccacacacggaatttgttggctgatccaagatgcacgcttgttgtgcagattcctggatggagcggcttgtcaaatgcaagggtaaccatttttggtgatgtctacccacttccagaggatcagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

176

Amino Acids

19.24

Weight (kDa)

7.09

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	465
AccI	GTMKAC	2 cut(s)	117, 504
AciI	CCGC	2 cut(s)	195, 465
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	11, 198
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	3 cut(s)	167, 218, 245
AluI	AGCT	3 cut(s)	167, 218, 245
Alw21I	GWGCWC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	3 cut(s)	267, 367, 396
ApaLI	GTGCAC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	65, 98, 509
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	290
BccI	CCATC	4 cut(s)	318, 378, 407, 453
BciT130I	CCWGG	1 cut(s)	456
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	466
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	21, 422
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	456
BseGI	GGATG	7 cut(s)	14, 100, 106, 131, 370, 399, 464
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	2 cut(s)	221, 467
BshFI	GGCC	3 cut(s)	269, 369, 398
BsiHKAI	GWGCWC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	269, 369, 398
Bsp1286I	GDGCHC	2 cut(s)	174, 290
Bsp143I	GATC	2 cut(s)	424, 520
BspACI	CCGC	2 cut(s)	195, 465
BspANI	GGCC	3 cut(s)	269, 369, 398
BspPI	GGATC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	465
BssMI	GATC	2 cut(s)	424, 520
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	77, 122, 292
BstC8I	GCNNGC	3 cut(s)	267, 305, 437
BstEII	GGTNACC	1 cut(s)	484
BstF5I	GGATG	7 cut(s)	14, 100, 106, 131, 370, 399, 464
BstKTI	GATC	2 cut(s)	427, 523
BstMBI	GATC	2 cut(s)	424, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 215, 275, 445
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	454
BstSLI	GKGCMC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	269, 369, 398
BtsCI	GGATG	7 cut(s)	14, 100, 106, 131, 370, 399, 464
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	267, 305, 437
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	221, 304
CviQI	GTAC	1 cut(s)	248
DpnI	GATC	2 cut(s)	426, 522
DpnII	GATC	2 cut(s)	424, 520
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	11, 198
Eco91I	GGTNACC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	224, 307
FaiI	YATR	3 cut(s)	222, 260, 305
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	220, 303
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	2 cut(s)	117, 504
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	7 cut(s)	21, 107, 113, 118, 357, 386, 471
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	269, 369, 398
Hin1II	CATG	2 cut(s)	224, 307
HinfI	GANTC	3 cut(s)	181, 359, 451
HphI	GGTGA	3 cut(s)	65, 98, 509
Hpy166II	GTNNAC	4 cut(s)	118, 227, 288, 505
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	4 cut(s)	118, 227, 288, 505
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	3 cut(s)	52, 85, 314
HpyCH4III	ACNGT	3 cut(s)	77, 122, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 215, 275, 445
Hsp92II	CATG	2 cut(s)	224, 307
Kzo9I	GATC	2 cut(s)	424, 520
LmnI	GCTCC	3 cut(s)	149, 262, 462
LweI	GCATC	2 cut(s)	21, 422
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	297, 484
MalI	GATC	2 cut(s)	426, 522
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	2 cut(s)	424, 520
MhlI	GDGCHC	2 cut(s)	174, 290
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	64, 186, 412
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	97, 149, 240, 511
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	36, 68, 111
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	149, 215, 275, 445
NdeII	GATC	2 cut(s)	424, 520
NlaIII	CATG	2 cut(s)	224, 307
NmuCI	GTSAC	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	359, 451
PflMI	CCANNNNNTGG	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	36, 68, 111
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	2 cut(s)	424, 520
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	2 cut(s)	174, 290
SetI	ASST	6 cut(s)	45, 169, 220, 232, 247, 358
SfaNI	GCATC	2 cut(s)	21, 422
SmiI	ATTTAAAT	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	3 cut(s)	64, 186, 412
SsiI	CCGC	2 cut(s)	195, 465
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	454
SwaI	ATTTAAAT	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	77, 122, 292
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	64, 186, 412
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	2 cut(s)	359, 451
Tru1I	TTAA	3 cut(s)	36, 68, 111
Tru9I	TTAA	3 cut(s)	36, 68, 111
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	2 cut(s)	225, 424
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	2 cut(s)	117, 504
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.