Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Reverse (-)

7409421 .. 7412457

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGCTCTCTTCACTTCAACACACACACCCAATTTACAGACTAAGCCTCTCCTCAAATCTCCGCTGCCCACTTCTTCCCAGTCTTCGTGTTGGTTTTGTAATTCGCTACCCAAAACGCAATTCCCGAAGCTGAGACTCAGTAATGGATCAAGTCACGGGCTTCGTATACAAGCTCTCTTACGTAACGAGACGCCAAGTGAAGGTGAAGATAATAATGGGTTTGGTTTTTTTCCTGGGGATATCTTCTCTTTATCACAGGAAAAGCTCGGGAGTAATAGCAATGGTGAAACTTCTCATAGTGTAATCGATGTGGAGGCATCTCTTGCACATCCTCAAGGTGGTGGAGGAAATCGAGCTGGGCTTTTTAGAACTCCAATATCTGGTGGTGTTCAAAATGCTACATCAGCTCATGCTTTACCTCGGCCTGCTTTAGCTGTACGGAACTTGTTGGAACAGGCTAGGTTTGCTCATCTGTGCACAGTGATGTCCAAAATGCACCACCGCAGGGAAGGGTACCCATTTGGCTCATTGGTAGATTTTGCACCTGATCGGATGGGGCATCCAATATTTTTGTTTTCACCGCTGGCCATCCACACACGAAATCTCTTGAATGAACCTAGATGCAGCCTCGTTGTTCAGATACCCGGATGGAGTGGCTTATCGAATGCAAGAGTGACATTATTTGGTGATGTGTACCCATTGTCAGAGGATGAACAGGAGTGGGCCCATAAGCAATATATTGCAAAGCACCCGCACGGGCCTTCAGAGCAATGGGGAAACTTTCATTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGCTTTGGCACGGTCGCTTGGGTTGATGTCAAAGAGTATGAAGGTTTACAACCAGATAAGATAGCTGTTGATGGTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTCTCGAAACCGCTGAGAGAGCTACTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTCATTTCAATAGATAGCAAAGGAATAGATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCATTTGAGGAAGGTCATGGTGTTGAGACACTAGAAGAAGCTAAGTCTGCATTATGGAAAGTGTTGGAGAAGGTCAAGCTGAATTTGCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

387

Amino Acids

42.85

Weight (kDa)

6.44

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	147 - 290	2.8e-20	CREG, beta-barrel
PNPOx_N	PF01243	147 - 255	7.3e-07	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccBSI	CCGCTC	1 cut(s)	913
AccI	GTMKAC	3 cut(s)	169, 968, 984
AciI	CCGC	6 cut(s)	65, 505, 584, 755, 913, 950
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	1150
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	4 cut(s)	441, 518, 698, 1029
AfiI	CCNNNNNNNGG	4 cut(s)	203, 341, 383, 508
AgsI	TTSAA	4 cut(s)	21, 395, 613, 1005
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
Alw21I	GWGCWC	2 cut(s)	482, 1048
Alw26I	GTCTC	3 cut(s)	130, 185, 1088
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	425, 588, 726, 761
ApaI	GGGCCC	1 cut(s)	730
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	67, 627, 992
ApoI	RAATTY	1 cut(s)	1150
Asp718I	GGTACC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	726, 727, 761
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	5 cut(s)	218, 299, 573, 701, 920
AsuNHI	GCTAGC	1 cut(s)	1066
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	2 cut(s)	482, 730
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	482, 1048
BbvI	GCAGC	3 cut(s)	54, 639, 979
BccI	CCATC	5 cut(s)	550, 599, 645, 896, 944
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	3 cut(s)	130, 185, 1088
BfaI	CTAG	4 cut(s)	462, 621, 1067, 1100
BisI	GCNGC	3 cut(s)	68, 628, 993
BlsI	GCNGC	3 cut(s)	69, 629, 994
Bme1390I	CCNGG	2 cut(s)	237, 648
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	726, 727, 761
BmiI	GGNNCC	3 cut(s)	518, 728, 917
BmrFI	CCNGG	2 cut(s)	237, 648
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	4 cut(s)	329, 571, 614, 979
BmtI	GCTAGC	1 cut(s)	1070
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	321, 905
BpuMI	CCSGG	1 cut(s)	648
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	236, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 341, 383, 508
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	289, 779
BseBI	CCWGG	1 cut(s)	237
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	236, 422
BseGI	GGATG	6 cut(s)	331, 561, 562, 591, 656, 718
BseLI	CCNNNNNNNGG	4 cut(s)	203, 341, 383, 508
BseMI	GCAATG	2 cut(s)	289, 779
BseMII	CTCAG	4 cut(s)	125, 154, 944, 1061
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	482, 730
BseXI	GCAGC	3 cut(s)	54, 639, 979
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	846
BshFI	GGCC	4 cut(s)	427, 590, 728, 763
BshNI	GGYRCC	1 cut(s)	516
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	846
BsiHKAI	GWGCWC	2 cut(s)	482, 1048
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	648
BslI	CCNNNNNNNGG	4 cut(s)	203, 341, 383, 508
BsmAI	GTCTC	3 cut(s)	130, 185, 1088
BsmBI	CGTCTC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	673, 804
BsnI	GGCC	4 cut(s)	427, 590, 728, 763
BsoBI	CYCGRG	1 cut(s)	269
Bsp120I	GGGCCC	1 cut(s)	726
Bsp1286I	GDGCHC	3 cut(s)	482, 730, 1048
Bsp143I	GATC	2 cut(s)	149, 550
BspACI	CCGC	6 cut(s)	65, 505, 584, 755, 913, 950
BspANI	GGCC	4 cut(s)	427, 590, 728, 763
BspCNI	CTCAG	4 cut(s)	126, 153, 945, 1060
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	518, 728, 917
BspOI	GCTAGC	1 cut(s)	1070
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	516
BsrBI	CCGCTC	1 cut(s)	913
BsrDI	GCAATG	2 cut(s)	289, 779
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	236, 422
BssMI	GATC	2 cut(s)	149, 550
BssNAI	GTATAC	1 cut(s)	170
BssNI	GRCGYC	1 cut(s)	194
Bst1107I	GTATAC	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	484, 844, 966
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	429, 588, 1068
BstDEI	CTNAG	6 cut(s)	45, 134, 140, 953, 1047, 1110
BstF5I	GGATG	6 cut(s)	331, 561, 562, 591, 656, 718
BstKTI	GATC	2 cut(s)	152, 553
BstMAI	GTCTC	3 cut(s)	130, 185, 1088
BstMBI	GATC	2 cut(s)	149, 550
BstMCI	CGRYCG	1 cut(s)	846
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 407, 467, 769, 958, 1115, 1153
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	235, 646
BstSLI	GKGCMC	2 cut(s)	482, 730
BstSNI	TACGTA	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	54, 639, 979
BstV2I	GAAGAC	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	427, 590, 728, 763
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	6 cut(s)	331, 561, 562, 591, 656, 718
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	429, 588, 1068
Cfr13I	GGNCC	3 cut(s)	726, 727, 761
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	4 cut(s)	440, 517, 697, 1028
CviAII	CATG	2 cut(s)	413, 1085
CviQI	GTAC	4 cut(s)	440, 517, 697, 1028
DdeI	CTNAG	6 cut(s)	45, 134, 140, 953, 1047, 1110
DpnI	GATC	2 cut(s)	151, 552
DpnII	GATC	2 cut(s)	149, 550
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco105I	TACGTA	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	730
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	416, 1088
FatI	CATG	2 cut(s)	412, 1084
FauI	CCCGC	1 cut(s)	762
FblI	GTMKAC	3 cut(s)	169, 968, 984
Fnu4HI	GCNGC	3 cut(s)	68, 628, 993
FokI	GGATG	6 cut(s)	318, 549, 568, 578, 663, 725
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	68, 628, 993
FspBI	CTAG	4 cut(s)	462, 621, 1067, 1100
GluI	GCNGC	3 cut(s)	68, 628, 993
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	427, 590, 728, 763
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	416, 1088
HinfI	GANTC	2 cut(s)	138, 974
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	5 cut(s)	218, 299, 573, 701, 920
Hpy166II	GTNNAC	6 cut(s)	170, 480, 697, 878, 969, 985
Hpy188I	TCNGA	5 cut(s)	555, 642, 709, 769, 979
Hpy188III	TCNNGA	4 cut(s)	127, 271, 610, 943
Hpy8I	GTNNAC	6 cut(s)	170, 480, 697, 878, 969, 985
HpyAV	CCTTC	6 cut(s)	197, 506, 774, 866, 1073, 1132
HpyCH4III	ACNGT	3 cut(s)	484, 844, 966
HpyCH4IV	ACGT	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 407, 467, 769, 958, 1115, 1153
HpyF3I	CTNAG	6 cut(s)	45, 134, 140, 953, 1047, 1110
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	416, 1088
KpnI	GGTACC	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	149, 550
Lsp1109I	GCAGC	3 cut(s)	54, 639, 979
LweI	GCATC	4 cut(s)	329, 571, 614, 979
MaeI	CTAG	4 cut(s)	462, 621, 1067, 1100
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	155, 185, 676
MalI	GATC	2 cut(s)	151, 552
MbiI	CCGCTC	1 cut(s)	913
MboI	GATC	2 cut(s)	149, 550
MboII	GAAGA	7 cut(s)	4, 69, 78, 221, 238, 931, 1115
MhlI	GDGCHC	3 cut(s)	482, 730, 1048
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	4 cut(s)	34, 103, 122, 1150
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	432, 1113
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	1 cut(s)	1053
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	3 cut(s)	67, 586, 952
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	2 cut(s)	237, 648
Mva1269I	GAATGC	2 cut(s)	673, 804
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	7 cut(s)	326, 407, 467, 769, 958, 1115, 1153
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	2 cut(s)	149, 550
NheI	GCTAGC	1 cut(s)	1066
NlaIII	CATG	2 cut(s)	416, 1088
NlaIV	GGNNCC	3 cut(s)	518, 728, 917
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	155, 676
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	2 cut(s)	673, 804
PfeI	GAWTC	1 cut(s)	974
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	69, 629, 994
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	518, 728, 917
PspOMI	GGGCCC	1 cut(s)	726
PspPI	GGNCC	3 cut(s)	726, 727, 761
RsaI	GTAC	4 cut(s)	441, 518, 698, 1029
RsaNI	GTAC	4 cut(s)	440, 517, 697, 1028
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	1053
SatI	GCNGC	3 cut(s)	68, 628, 993
Sau3AI	GATC	2 cut(s)	149, 550
Sau96I	GGNCC	3 cut(s)	726, 727, 761
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	2 cut(s)	237, 648
SduI	GDGCHC	3 cut(s)	482, 730, 1048
SfaNI	GCATC	4 cut(s)	329, 571, 614, 979
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	336, 920
SmoI	CTYRAG	2 cut(s)	336, 920
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	4 cut(s)	34, 103, 122, 1150
SsiI	CCGC	6 cut(s)	65, 505, 584, 755, 913, 950
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	4 cut(s)	462, 621, 1067, 1100
StyD4I	CCNGG	2 cut(s)	235, 646
TaaI	ACNGT	3 cut(s)	484, 844, 966
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	4 cut(s)	309, 355, 665, 944
TasI	AATT	4 cut(s)	34, 103, 122, 1150
TfiI	GAWTC	1 cut(s)	974
Tru1I	TTAA	1 cut(s)	1053
Tru9I	TTAA	1 cut(s)	1053
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	155, 676
TseI	GCWGC	3 cut(s)	67, 627, 992
Tsp45I	GTSAC	2 cut(s)	155, 676
TspDTI	ATGAA	5 cut(s)	630, 729, 776, 814, 885
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	1150
XmiI	GTMKAC	3 cut(s)	169, 968, 984
XspI	CTAG	4 cut(s)	462, 621, 1067, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.