Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013937.1

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Forward (+)

16715 .. 18851

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013937.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggaagccctggcaaggtctgtgttcatacccgagacgtttcctcttcataacaacaacaacaacaacccagttacttcaatcagaacacccaataaccgaactgggtctctcaaaatcggccaaagctgccattttttcggcctccgcgcccaagctctctccggcgaggcttctgggtccggcgagaatgaagatgcaaggcttctcagtagtggctttggcttagatagtctctctttgcctcagggtaatttaaatcaccgtgaaagtggtgagaaggatgtggatgaggcatttaatgtagacagttctcctacatcccattctgcaagtggagcaggaggaacaagagctgggctctttaggactccaatttctggcggggtgcagagtgcaacttcagctcatggtttacctcgtccgtccctagctgtacgcaatcttatggagcaggccagatttgctcatttgtgcactgtgatgtcacgcatgcaccatcgacgagaaggatatccatttggttcgctggttgattttgcacctgattcaatgggccatcctatcttttcgttttccccattggccatccacacacggaatttgttggctgatccaagatgcacgcttgttgtgcagttcaacattcagaggctatcatttgaagaaggccattctgttgagacattagaggaagccaaggctgctcttaggaaacttataaacaaaggccgagtgcatagattgagttgtaatagaattgatgtgcaacgttattttagtttggaatgcacagaatgtgttgcttgtgcttgtgcgcaaatgaaaccttccaagttgtatgcactcgaagtgatcgagttggagacggtgttgatgcaacatggaagtcttgatgacgaatactcgaagaagagtgacacacatttctttctaggcctgggctctgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

317

Amino Acids

34.66

Weight (kDa)

6.53

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	722
Acc16I	TGCGCA	1 cut(s)	819
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	150
AciI	CCGC	2 cut(s)	148, 384
AclI	AACGTT	1 cut(s)	772
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	2 cut(s)	121, 585
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	15, 380
AgsI	TTSAA	4 cut(s)	81, 552, 643, 665
AjnI	CCWGG	2 cut(s)	9, 939
AluBI	AGCT	5 cut(s)	129, 158, 356, 407, 434
AluI	AGCT	5 cut(s)	129, 158, 356, 407, 434
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	5 cut(s)	29, 114, 239, 677, 860
Alw44I	GTGCAC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	8 cut(s)	121, 142, 456, 556, 585, 670, 730, 937
ApaLI	GTGCAC	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	129, 704
ApoI	RAATTY	1 cut(s)	601
AspLEI	GCGC	2 cut(s)	152, 820
AspS9I	GGNCC	2 cut(s)	180, 556
AsuHPI	GGTGA	2 cut(s)	254, 287
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	363, 947
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	116, 691
BccI	CCATC	3 cut(s)	507, 567, 596
BciT130I	CCWGG	2 cut(s)	11, 941
BcoDI	GTCTC	5 cut(s)	29, 114, 239, 677, 860
BfaI	CTAG	2 cut(s)	431, 935
BisI	GCNGC	2 cut(s)	130, 705
BlsI	GCNGC	2 cut(s)	131, 706
Bme1390I	CCNGG	2 cut(s)	11, 941
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	180, 556
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	11, 941
BmrI	ACTGGG	2 cut(s)	65, 114
BmsI	GCATC	3 cut(s)	187, 611, 867
BmuI	ACTGGG	2 cut(s)	65, 114
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	9, 699, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 380
Bse1I	ACTGG	2 cut(s)	71, 109
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	11, 941
BseDI	CCNNGG	3 cut(s)	9, 699, 940
BseGI	GGATG	5 cut(s)	289, 295, 320, 559, 588
BseLI	CCNNNNNNNGG	2 cut(s)	15, 380
BseMII	CTCAG	3 cut(s)	223, 260, 939
BseNI	ACTGG	2 cut(s)	71, 109
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	116, 691
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	2 cut(s)	410, 656
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	8 cut(s)	123, 144, 458, 558, 587, 672, 732, 939
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	165, 183
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	15, 380
BsmAI	GTCTC	5 cut(s)	29, 114, 239, 677, 860
BsmBI	CGTCTC	2 cut(s)	29, 860
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	8 cut(s)	123, 144, 458, 558, 587, 672, 732, 939
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	363, 479, 947
Bsp143I	GATC	2 cut(s)	613, 855
BspACI	CCGC	2 cut(s)	148, 384
BspANI	GGCC	8 cut(s)	123, 144, 458, 558, 587, 672, 732, 939
BspCNI	CTCAG	3 cut(s)	222, 259, 940
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	71, 109
BssECI	CCNNGG	3 cut(s)	9, 699, 940
BssMI	GATC	2 cut(s)	613, 855
BssT1I	CCWWGG	1 cut(s)	699
Bst2UI	CCWGG	2 cut(s)	11, 941
Bst4CI	ACNGT	4 cut(s)	266, 311, 481, 871
Bst6I	CTCTTC	2 cut(s)	51, 908
BstC8I	GCNNGC	3 cut(s)	456, 494, 626
BstDEI	CTNAG	5 cut(s)	209, 226, 246, 710, 948
BstF5I	GGATG	5 cut(s)	289, 295, 320, 559, 588
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	152, 820
BstKTI	GATC	2 cut(s)	616, 858
BstMAI	GTCTC	5 cut(s)	29, 114, 239, 677, 860
BstMBI	GATC	2 cut(s)	613, 855
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 338, 404, 464, 634, 704
BstNI	CCWGG	2 cut(s)	11, 941
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	9, 939
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	116, 691
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	8 cut(s)	123, 144, 458, 558, 587, 672, 732, 939
BtsCI	GGATG	5 cut(s)	289, 295, 320, 559, 588
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	3 cut(s)	456, 494, 626
CfoI	GCGC	2 cut(s)	152, 820
Cfr13I	GGNCC	2 cut(s)	180, 556
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	3 cut(s)	410, 493, 884
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	5 cut(s)	209, 226, 246, 710, 948
DpnI	GATC	2 cut(s)	615, 857
DpnII	GATC	2 cut(s)	613, 855
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	2 cut(s)	121, 585
Eam1104I	CTCTTC	2 cut(s)	51, 908
EarI	CTCTTC	2 cut(s)	51, 908
Eco130I	CCWWGG	1 cut(s)	699
Eco147I	AGGCCT	1 cut(s)	939
Eco24I	GRGCYC	2 cut(s)	363, 947
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	9, 939
EcoRV	GATATC	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	2 cut(s)	363, 947
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	2 cut(s)	29, 860
FaeI	CATG	3 cut(s)	413, 496, 887
FaiI	YATR	9 cut(s)	29, 51, 411, 449, 494, 722, 741, 843, 885
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	3 cut(s)	409, 492, 883
FauI	CCCGC	1 cut(s)	377
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	130, 705
FokI	GGATG	5 cut(s)	296, 302, 307, 546, 575
FriOI	GRGCYC	2 cut(s)	363, 947
Fsp4HI	GCNGC	2 cut(s)	130, 705
FspBI	CTAG	2 cut(s)	431, 935
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	2 cut(s)	151, 819
GluI	GCNGC	2 cut(s)	130, 705
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	8 cut(s)	123, 144, 458, 558, 587, 672, 732, 939
HapII	CCGG	2 cut(s)	165, 183
HhaI	GCGC	2 cut(s)	152, 820
Hin1II	CATG	3 cut(s)	413, 496, 887
Hin6I	GCGC	2 cut(s)	150, 818
HinP1I	GCGC	2 cut(s)	150, 818
HinfI	GANTC	2 cut(s)	370, 548
HpaII	CCGG	2 cut(s)	165, 183
HphI	GGTGA	2 cut(s)	254, 287
Hpy166II	GTNNAC	3 cut(s)	307, 416, 477
Hpy188I	TCNGA	3 cut(s)	86, 651, 949
Hpy188III	TCNNGA	1 cut(s)	893
Hpy8I	GTNNAC	3 cut(s)	307, 416, 477
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	4 cut(s)	274, 503, 662, 840
HpyCH4III	ACNGT	4 cut(s)	266, 311, 481, 871
HpyCH4IV	ACGT	2 cut(s)	38, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 338, 404, 464, 634, 704
HpyF3I	CTNAG	5 cut(s)	209, 226, 246, 710, 948
HpySE526I	ACGT	2 cut(s)	38, 772
Hsp92II	CATG	3 cut(s)	413, 496, 887
HspAI	GCGC	2 cut(s)	150, 818
Kzo9I	GATC	2 cut(s)	613, 855
LmnI	GCTCC	2 cut(s)	338, 451
Lsp1109I	GCAGC	2 cut(s)	116, 691
LweI	GCATC	3 cut(s)	187, 611, 867
MaeI	CTAG	2 cut(s)	431, 935
MaeII	ACGT	2 cut(s)	38, 772
MaeIII	GTNAC	3 cut(s)	73, 486, 917
MalI	GATC	2 cut(s)	615, 857
MboI	GATC	2 cut(s)	613, 855
MboII	GAAGA	5 cut(s)	38, 206, 677, 922, 925
MhlI	GDGCHC	3 cut(s)	363, 479, 947
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	4 cut(s)	253, 375, 601, 759
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	9 cut(s)	54, 155, 163, 255, 286, 338, 429, 645, 685
Mox20I	TGGCCA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	2 cut(s)	257, 300
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	587
MspI	CCGG	2 cut(s)	165, 183
MspR9I	CCNGG	2 cut(s)	11, 941
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	11, 941
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	129, 338, 404, 464, 634, 704
NdeII	GATC	2 cut(s)	613, 855
NlaIII	CATG	3 cut(s)	413, 496, 887
NlaIV	GGNNCC	1 cut(s)	181
NmeAIII	GCCGAG	1 cut(s)	758
NmuCI	GTSAC	2 cut(s)	486, 917
NsbI	TGCGCA	1 cut(s)	819
NspI	RCATGY	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PctI	GAATGC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	131, 706
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	722
Psp1406I	AACGTT	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	9, 939
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	9, 939
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	180, 556
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	257, 300
SatI	GCNGC	2 cut(s)	130, 705
Sau3AI	GATC	2 cut(s)	613, 855
Sau96I	GGNCC	2 cut(s)	180, 556
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	11, 941
SduI	GDGCHC	3 cut(s)	363, 479, 947
SfaNI	GCATC	3 cut(s)	187, 611, 867
SinI	GGWCC	1 cut(s)	180
SmiI	ATTTAAAT	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	4 cut(s)	253, 375, 601, 759
SseBI	AGGCCT	1 cut(s)	939
SsiI	CCGC	2 cut(s)	148, 384
SspMI	CTAG	2 cut(s)	431, 935
StuI	AGGCCT	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	9, 939
StyI	CCWWGG	1 cut(s)	699
SwaI	ATTTAAAT	1 cut(s)	258
TaaI	ACNGT	4 cut(s)	266, 311, 481, 871
TaiI	ACGT	2 cut(s)	41, 775
TaqI	TCGA	4 cut(s)	502, 849, 858, 908
TasI	AATT	4 cut(s)	253, 375, 601, 759
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	257, 300
Tru9I	TTAA	2 cut(s)	257, 300
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	486, 917
TseI	GCWGC	2 cut(s)	129, 704
Tsp45I	GTSAC	2 cut(s)	486, 917
TspDTI	ATGAA	4 cut(s)	16, 38, 207, 839
TspGWI	ACGGA	2 cut(s)	414, 613
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	431, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.