MD17G1147200.v1.1

Pyridoxamine 5'-phosphate oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
13324718 .. 13330139
5422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1147200.v1.1.491

Sequence Viewer

Length: 1365 bp
ATGCCACATCCAAAAAAAAAAAAAAAAACCACAGATTTTGGGGCAAACAACGTAAGACAAACCCAAGACAATCACCATCTCCAACCCCAAAATCTGTCACTCAGTTTCGCCTCCGCAGTTTACAGTACATCCAACCAAACACTTAATCCACCCTCTTTCTGTCTCTGTACATTCTCCATGGAAGCCCTCGCAAGCTCTGCCTTCGTTCCGGAGGCGCACCCAGTTCTGAACAATCCTACTTCAATCAGAACGCCGAATAATCGAAGTGGGTTTCTAAAAGTCAGTCAAAGTTCTCGTTTTTCTGGGCTTCGGGTTCGAGCCCTGTCCGGGGAGGCCTCTGGGTCCGGCGAAAGTGAAGAGCTGAGGCCTCCGAATAATGGGTTCGGCTTGCTTTCCGAAGACACTCTCTCTTTCTCTCAGTTGTGGGAAGTGCAAATAAGTGGAAATTGGAGTGGCGATTTAAATCACTTCGAAAGTAGTGAGAAGAATGTGGATGAGGCATTAATGGTAGATATGTCTCTTACATCCCCTTCTGCTAGTGGATCAGGAGGTGGAACAAGAGCTGGGCTCTTTAGAACTCCAATTTCTGGCGGGGTACAGAGTGCAACTTCAGCTCATGGTTTACCCCGTCCCGCCTTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATTTGTGCACCATAATGTCTCGCATGCACCACAGGCGACAAGGATATCCATTTGGTTCTCTAGTTGATTTTGCACCTGATTCATCAGGGCATCCTATATTTTCGTTTTCACCATTGGCTATCCATACTCGGAATTTGTTAGCTGATCCAAGATGCACACTTGTTGTGCAGATTCCTGGATGGAGCGGCTTGTCAAATGCTAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGCATGAACAGGAATGGGCTCATAAGCAATACATAGCAAAGCATCAACAGGGGCCTTCTCAACAATGGGGAAACTTCTACTACTTCAGGATGCAGAACATAAGCGACATATATTTCATTGGTGGCTTTGGCACTGTTGCTTGGGTCGACGTCAAAGAATACGAGGCCCTGCAGCCTGATAGGATTGCAGTTAATGGAGGGGAGCAGAACCTGAAGGAACTCAATGCAATGTTTTCGAAGCCCCTAAAAGAGCTTTTATCCGCCGAGTCTGAGGTGGATGATGCCGCTCTCATATCCATAGACAGCAAAGGAACTGATATTCGGGTCCGCCAAGGTGCACAGTTCAACGTACAGAGGATATCATTTGACGAAGGCCATTCTGTCGAGACACTGGAGGAAGCAAAGGTTGCTCTCCGAAAAGTGATAAACAAAGGGCGAGTATTCAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

49.98

Weight (kDa)

6.96

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 215 - 359 3.1e-19 CREG, beta-barrel
PNPOx_N PF01243 237 - 325 5.5e-06 Pyridoxamine 5'-phosphate oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1065
AccB7I CCANNNNNTGG 1 cut(s) 587
AccBSI CCGCTC 2 cut(s) 861, 1199
AccI GTMKAC 2 cut(s) 900, 1059
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 7 cut(s) 114, 591, 633, 861, 1173, 1197, 1240
AclWI GGATC 2 cut(s) 550, 815
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 3 cut(s) 594, 982, 1145
AcyI GRCGYC 1 cut(s) 1062
AfaI GTAC 5 cut(s) 127, 169, 597, 645, 1263
AfiI CCNNNNNNNGG 4 cut(s) 327, 328, 377, 587
AgsI TTSAA 3 cut(s) 243, 1258, 1357
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 7 cut(s) 195, 361, 563, 614, 641, 818, 1165
AluI AGCT 7 cut(s) 195, 361, 563, 614, 641, 818, 1165
Alw21I GWGCWC 2 cut(s) 686, 1252
Alw26I GTCTC 4 cut(s) 167, 522, 699, 1292
Alw44I GTGCAC 2 cut(s) 682, 1248
AlwI GGATC 2 cut(s) 550, 815
AlwNI CAGNNNCTG 1 cut(s) 1123
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 6 cut(s) 333, 365, 663, 965, 1077, 1285
ApaLI GTGCAC 2 cut(s) 682, 1248
ApeKI GCWGC 1 cut(s) 1084
ApoI RAATTY 1 cut(s) 808
AseI ATTAAT 1 cut(s) 503
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 4 cut(s) 342, 965, 1078, 1237
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 3 cut(s) 65, 777, 905
AsuII TTCGAA 2 cut(s) 471, 1148
AvaII GGWCC 2 cut(s) 342, 1237
BaeGI GKGCMC 2 cut(s) 686, 1252
BanII GRGCYC 3 cut(s) 322, 570, 934
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 686, 1252
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 1096
BccI CCATC 2 cut(s) 84, 849
BcgI CGANNNNNNTGC 2 cut(s) 1128, 1162
BciT130I CCWGG 1 cut(s) 852
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 4 cut(s) 167, 522, 699, 1292
BfaI CTAG 3 cut(s) 537, 737, 876
BfmI CTRYAG 1 cut(s) 1082
BisI GCNGC 3 cut(s) 862, 1085, 1197
BlsI GCNGC 3 cut(s) 863, 1086, 1198
Bme1390I CCNGG 2 cut(s) 328, 852
Bme18I GGWCC 2 cut(s) 342, 1237
BmgT120I GGNCC 4 cut(s) 342, 965, 1078, 1237
BmiI GGNNCC 3 cut(s) 343, 966, 1238
BmrFI CCNGG 2 cut(s) 328, 852
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 5 cut(s) 775, 818, 964, 993, 1183
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 552, 584
BpmI CTGGAG 1 cut(s) 1325
Bpu10I CCTNAGC 2 cut(s) 362, 637
Bpu14I TTCGAA 2 cut(s) 471, 1148
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 1062
BsaJI CCNNGG 3 cut(s) 177, 327, 1243
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 328, 377, 587
Bse1I ACTGG 2 cut(s) 221, 1308
Bse3DI GCAATG 1 cut(s) 1146
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 3 cut(s) 177, 327, 1243
BseGI GGATG 8 cut(s) 7, 128, 499, 524, 766, 860, 1008, 1195
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 327, 328, 377, 587
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 4 cut(s) 115, 353, 431, 1173
BseNI ACTGG 2 cut(s) 221, 1308
BseSI GKGCMC 2 cut(s) 686, 1252
BseXI GCAGC 1 cut(s) 1096
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 863
BshFI GGCC 6 cut(s) 335, 367, 665, 967, 1079, 1287
BsiHKAI GWGCWC 2 cut(s) 686, 1252
BsiSI CCGG 3 cut(s) 209, 327, 345
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 4 cut(s) 327, 328, 377, 587
BsmAI GTCTC 4 cut(s) 167, 522, 699, 1292
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 6 cut(s) 335, 367, 665, 967, 1079, 1287
Bsp119I TTCGAA 2 cut(s) 471, 1148
Bsp1286I GDGCHC 5 cut(s) 322, 570, 686, 934, 1252
Bsp13I TCCGGA 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 542, 820
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 7 cut(s) 114, 591, 633, 861, 1173, 1197, 1240
BspANI GGCC 6 cut(s) 335, 367, 665, 967, 1079, 1287
BspCNI CTCAG 4 cut(s) 114, 354, 430, 1174
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 343, 966, 1238
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 2 cut(s) 550, 815
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 2 cut(s) 471, 1148
BsrBI CCGCTC 2 cut(s) 861, 1199
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 1 cut(s) 167
BsrI ACTGG 2 cut(s) 221, 1308
BssECI CCNNGG 3 cut(s) 177, 327, 1243
BssMI GATC 2 cut(s) 542, 820
BssNI GRCGYC 1 cut(s) 1062
BssT1I CCWWGG 2 cut(s) 177, 1243
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 125, 1048, 1254
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 1062
BstAPI GCANNNNNTGC 2 cut(s) 197, 1319
BstAUI TGTACA 1 cut(s) 167
BstBI TTCGAA 2 cut(s) 471, 1148
BstC8I GCNNGC 4 cut(s) 193, 389, 663, 701
BstDEI CTNAG 5 cut(s) 101, 362, 417, 637, 1182
BstDSI CCRYGG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 880
BstF5I GGATG 8 cut(s) 7, 128, 499, 524, 766, 860, 1008, 1195
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 545, 823
BstMAI GTCTC 4 cut(s) 167, 522, 699, 1292
BstMBI GATC 2 cut(s) 542, 820
BstMWI GCNNNNNNNGC 5 cut(s) 197, 611, 671, 709, 1319
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 703
BstPI GGTNACC 1 cut(s) 880
BstSCI CCNGG 2 cut(s) 326, 850
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 2 cut(s) 686, 1252
BstV1I GCAGC 1 cut(s) 1096
BstV2I GAAGAC 1 cut(s) 405
BsuRI GGCC 6 cut(s) 335, 367, 665, 967, 1079, 1287
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 8 cut(s) 7, 128, 499, 524, 766, 860, 1008, 1195
BtsIMutI CAGTG 2 cut(s) 1044, 1301
Cac8I GCNNGC 4 cut(s) 193, 389, 663, 701
CaiI CAGNNNCTG 1 cut(s) 1123
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 4 cut(s) 342, 965, 1078, 1237
Csp6I GTAC 5 cut(s) 126, 168, 596, 644, 1262
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 4 cut(s) 178, 617, 700, 917
CviQI GTAC 5 cut(s) 126, 168, 596, 644, 1262
DdeI CTNAG 5 cut(s) 101, 362, 417, 637, 1182
DpnI GATC 2 cut(s) 544, 822
DpnII GATC 2 cut(s) 542, 820
DraI TTTAAA 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 2 cut(s) 1162, 1229
Eco130I CCWWGG 2 cut(s) 177, 1243
Eco147I AGGCCT 2 cut(s) 335, 367
Eco24I GRGCYC 3 cut(s) 322, 570, 934
Eco32I GATATC 2 cut(s) 722, 1272
Eco47I GGWCC 2 cut(s) 342, 1237
Eco57I CTGAAG 3 cut(s) 594, 982, 1145
Eco91I GGTNACC 1 cut(s) 880
EcoO109I RGGNCCY 2 cut(s) 965, 1078
EcoO65I GGTNACC 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 2 cut(s) 722, 1272
EcoT14I CCWWGG 2 cut(s) 177, 1243
EcoT38I GRGCYC 3 cut(s) 322, 570, 934
ErhI CCWWGG 2 cut(s) 177, 1243
FaeI CATG 4 cut(s) 181, 620, 703, 920
FaqI GGGAC 1 cut(s) 615
FatI CATG 4 cut(s) 177, 616, 699, 916
FauI CCCGC 2 cut(s) 584, 640
FblI GTMKAC 2 cut(s) 900, 1059
Fnu4HI GCNGC 3 cut(s) 862, 1085, 1197
FokI GGATG 7 cut(s) 115, 506, 511, 753, 867, 1015, 1202
FriOI GRGCYC 3 cut(s) 322, 570, 934
Fsp4HI GCNGC 3 cut(s) 862, 1085, 1197
FspBI CTAG 3 cut(s) 537, 737, 876
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 862, 1085, 1197
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 1325
HaeIII GGCC 6 cut(s) 335, 367, 665, 967, 1079, 1287
HapII CCGG 3 cut(s) 209, 327, 345
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 1062
Hin1II CATG 4 cut(s) 181, 620, 703, 920
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HinfI GANTC 3 cut(s) 755, 847, 1178
HpaII CCGG 3 cut(s) 209, 327, 345
HphI GGTGA 3 cut(s) 65, 777, 905
Hpy166II GTNNAC 6 cut(s) 121, 623, 684, 901, 1060, 1250
Hpy188I TCNGA 7 cut(s) 228, 248, 372, 397, 807, 1183, 1328
Hpy188III TCNNGA 5 cut(s) 209, 546, 911, 1000, 1297
Hpy8I GTNNAC 6 cut(s) 121, 623, 684, 901, 1060, 1250
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 5 cut(s) 211, 540, 978, 1120, 1277
HpyCH4III ACNGT 3 cut(s) 125, 1048, 1254
HpyCH4IV ACGT 3 cut(s) 51, 1062, 1260
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 611, 671, 709, 1319
HpyF3I CTNAG 5 cut(s) 101, 362, 417, 637, 1182
HpySE526I ACGT 3 cut(s) 51, 1062, 1260
Hsp92I GRCGYC 1 cut(s) 1062
Hsp92II CATG 4 cut(s) 181, 620, 703, 920
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 542, 820
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 3 cut(s) 658, 858, 1114
Lsp1109I GCAGC 1 cut(s) 1096
LweI GCATC 5 cut(s) 775, 818, 964, 993, 1183
MaeI CTAG 3 cut(s) 537, 737, 876
MaeII ACGT 3 cut(s) 51, 1062, 1260
MaeIII GTNAC 2 cut(s) 96, 880
MalI GATC 2 cut(s) 544, 822
MbiI CCGCTC 2 cut(s) 861, 1199
MboI GATC 2 cut(s) 542, 820
MboII GAAGA 3 cut(s) 368, 410, 496
MhlI GDGCHC 5 cut(s) 322, 570, 686, 934, 1252
MluCI AATT 3 cut(s) 445, 582, 808
MlyI GAGTC 1 cut(s) 1187
MmeI TCCRAC 2 cut(s) 106, 156
MroI TCCGGA 1 cut(s) 208
MseI TTAA 4 cut(s) 144, 461, 503, 1104
MslI CAYNNNNRTG 1 cut(s) 689
MspI CCGG 3 cut(s) 209, 327, 345
MspR9I CCNGG 2 cut(s) 328, 852
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 5 cut(s) 197, 611, 671, 709, 1319
NciI CCSGG 1 cut(s) 328
NcoI CCATGG 1 cut(s) 177
NdeII GATC 2 cut(s) 542, 820
NlaIII CATG 4 cut(s) 181, 620, 703, 920
NlaIV GGNNCC 3 cut(s) 343, 966, 1238
NmeAIII GCCGAG 1 cut(s) 1201
NmuCI GTSAC 1 cut(s) 96
NspI RCATGY 1 cut(s) 703
NspV TTCGAA 2 cut(s) 471, 1148
PaeI GCATGC 1 cut(s) 703
PceI AGGCCT 2 cut(s) 335, 367
PciSI GCTCTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 755, 847
PflMI CCANNNNNTGG 1 cut(s) 587
PfoI TCCNGGA 1 cut(s) 850
PkrI GCNGC 3 cut(s) 863, 1086, 1198
PleI GAGTC 1 cut(s) 1186
PpsI GAGTC 1 cut(s) 1186
PshBI ATTAAT 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 850
PspEI GGTNACC 1 cut(s) 880
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 343, 966, 1238
PspPI GGNCC 4 cut(s) 342, 965, 1078, 1237
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 1 cut(s) 1123
RsaI GTAC 5 cut(s) 127, 169, 597, 645, 1263
RsaNI GTAC 5 cut(s) 126, 168, 596, 644, 1262
RseI CAYNNNNRTG 1 cut(s) 689
SalI GTCGAC 1 cut(s) 1058
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 4 cut(s) 144, 461, 503, 1104
SatI GCNGC 3 cut(s) 862, 1085, 1197
Sau3AI GATC 2 cut(s) 542, 820
Sau96I GGNCC 4 cut(s) 342, 965, 1078, 1237
SchI GAGTC 1 cut(s) 1187
ScrFI CCNGG 2 cut(s) 328, 852
SduI GDGCHC 5 cut(s) 322, 570, 686, 934, 1252
SfaNI GCATC 5 cut(s) 775, 818, 964, 993, 1183
SfcI CTRYAG 1 cut(s) 1082
SfuI TTCGAA 2 cut(s) 471, 1148
SinI GGWCC 2 cut(s) 342, 1237
SmiI ATTTAAAT 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 689
SphI GCATGC 1 cut(s) 703
Sse9I AATT 3 cut(s) 445, 582, 808
SseBI AGGCCT 2 cut(s) 335, 367
SsiI CCGC 7 cut(s) 114, 591, 633, 861, 1173, 1197, 1240
SspMI CTAG 3 cut(s) 537, 737, 876
StuI AGGCCT 2 cut(s) 335, 367
StyD4I CCNGG 2 cut(s) 326, 850
StyI CCWWGG 2 cut(s) 177, 1243
SwaI ATTTAAAT 1 cut(s) 462
TaaI ACNGT 3 cut(s) 125, 1048, 1254
TaiI ACGT 3 cut(s) 54, 1065, 1263
TaqI TCGA 6 cut(s) 262, 316, 471, 1059, 1148, 1296
TasI AATT 3 cut(s) 445, 582, 808
TatI WGTACW 2 cut(s) 125, 167
TauI GCSGC 2 cut(s) 864, 1199
TfiI GAWTC 2 cut(s) 755, 847
Tru1I TTAA 4 cut(s) 144, 461, 503, 1104
Tru9I TTAA 4 cut(s) 144, 461, 503, 1104
TscAI CASTG 2 cut(s) 1051, 1308
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 1084
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 747, 933, 1018
TspRI CASTG 2 cut(s) 1051, 1308
Van91I CCANNNNNTGG 1 cut(s) 587
VneI GTGCAC 2 cut(s) 682, 1248
VpaK11BI GGWCC 2 cut(s) 342, 1237
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 703
XmiI GTMKAC 2 cut(s) 900, 1059
XspI CTAG 3 cut(s) 537, 737, 876
ZraI GACGTC 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.