RchiOBHm_Chr2g0149681

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008585
Physical Location & Seq
Reverse (-)
67499388 .. 67504217
4830 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51908

Sequence Viewer

Length: 1158 bp
ATGGAAGCCCTGGCAAGGTCTGTGTTCATACCCGAGACGTTTCCTCTTCATAACAACAACAACAACAACCCAGTTACTTCAATCAGAACACCCAGTAACCGAACTGGGTCTCTCAAAATCGGCCAAAGCTGCCATTTTTTCGGCCTCCGTGCCCAAGCTCTCTCCGGCGAGGCTTCTGGGTCCGGCGAGAATGAAGATGCAAGGCCTCTCAGTAGTGGCTTTGGCTTAGATAGTCTCTCTTTGTCTCAGGGTAATTTAAATCACCGTGAAAGTGGTGAGAAGGATGTGGATGAGGCATTTAATGTAGACAGTTCTCCTACATCCCATTCTGCAAGTGGAGCAGGAGGAACAAGAGCTGGGCTCTTTAGGACTCCAATTTCTGGCGGGGTGCAGAGTGCAACTTCAGCTCATGGTTTACCTCGTCCGTCCCTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATTTGTGCACTGTGATGTCACGCATGCACCATCGACGAGAAGGATATCCATTTGGTTCGCTGGTTGATTTTGCACCTGATTCAATGGGCCATCCTATCTTTTCGTTTTCCCCATTGGCCATCCACACACGGAATTTGTTGGCTGATCCAAGATGCACGCTTGTTGTGCAGATTCCTGGATGGAGCGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGGATCAGCAGGAATGGGCTCATAAGCAATACATAGCAAAACATCAACAGGGGCCTTCTCAGCAATGGGGAAATTTCTACTACTTCAGGATGCAGAACATAAGTGACATTTATTTCATTGGTGGCTTTGGGACTGTCGCTTGGGTTGATGTGAAAGAGTACGAGGCCCTTCAGCCTGATAAGATTGCAGTTGATGGAGGGGAGCAAAACCTGAAGGAACTTAATGCAATCTTTTCTAAGCCCCTAAAAGAGCTACTGTCCCTTGAATCTGAGGTGGATGATGCTGCTTTCATCTCTATAGACAGCAAAGGAACGGATATTCGGGTCCGTCAGGGAGCACAGTTCAACATTCAGAGGCTATCATTTGAAGAAGGCCATTCTGTTGAGACATTAGAGGAAGCCAAGGCTGCTCTTAGGAAACTTATAAACAAAGGCCGAGTGCATAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

385

Amino Acids

42.22

Weight (kDa)

6.16

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 147 - 290 2.6e-18 CREG, beta-barrel
PNPOx_N PF01243 147 - 256 2.1e-06 Pyridoxamine 5'-phosphate oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1130
AccB7I CCANNNNNTGG 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 654
AccI GTMKAC 2 cut(s) 306, 693
AciI CCGC 2 cut(s) 384, 654
AclWI GGATC 2 cut(s) 608, 717
AcoI YGGCCR 2 cut(s) 121, 585
AcsI RAATTY 2 cut(s) 601, 778
AcuI CTGAAG 4 cut(s) 387, 775, 860, 938
AfaI GTAC 2 cut(s) 438, 866
AfiI CCNNNNNNNGG 2 cut(s) 15, 380
AgsI TTSAA 5 cut(s) 81, 552, 971, 1051, 1073
AjnI CCWGG 2 cut(s) 9, 643
AluBI AGCT 6 cut(s) 129, 158, 356, 407, 434, 958
AluI AGCT 6 cut(s) 129, 158, 356, 407, 434, 958
Alw21I GWGCWC 2 cut(s) 479, 1045
Alw26I GTCTC 5 cut(s) 29, 114, 239, 249, 1085
Alw44I GTGCAC 1 cut(s) 475
AlwI GGATC 2 cut(s) 608, 717
Ama87I CYCGRG 1 cut(s) 32
ApaLI GTGCAC 1 cut(s) 475
ApeKI GCWGC 3 cut(s) 129, 989, 1112
ApoI RAATTY 2 cut(s) 601, 778
AspS9I GGNCC 5 cut(s) 180, 556, 758, 871, 1030
AsuHPI GGTGA 3 cut(s) 254, 287, 698
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 2 cut(s) 180, 1030
BaeGI GKGCMC 2 cut(s) 154, 479
BalI TGGCCA 1 cut(s) 587
BanII GRGCYC 2 cut(s) 363, 727
Bbv12I GWGCWC 2 cut(s) 479, 1045
BbvI GCAGC 3 cut(s) 116, 976, 1099
BccI CCATC 5 cut(s) 507, 567, 596, 642, 893
BciT130I CCWGG 2 cut(s) 11, 645
BcoDI GTCTC 5 cut(s) 29, 114, 239, 249, 1085
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 1002
BisI GCNGC 4 cut(s) 130, 655, 990, 1113
BlsI GCNGC 4 cut(s) 131, 656, 991, 1114
Bme1390I CCNGG 2 cut(s) 11, 645
Bme18I GGWCC 2 cut(s) 180, 1030
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 5 cut(s) 180, 556, 758, 871, 1030
BmiI GGNNCC 3 cut(s) 181, 759, 1031
BmrFI CCNGG 2 cut(s) 11, 645
BmrI ACTGGG 3 cut(s) 65, 87, 114
BmsI GCATC 4 cut(s) 187, 611, 786, 976
BmuI ACTGGG 3 cut(s) 65, 87, 114
BplI GAGNNNNNCTC 2 cut(s) 345, 377
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 9, 1107
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 380
Bse1I ACTGG 3 cut(s) 71, 93, 109
Bse3DI GCAATG 1 cut(s) 776
BseBI CCWGG 2 cut(s) 11, 645
BseDI CCNNGG 2 cut(s) 9, 1107
BseGI GGATG 8 cut(s) 289, 295, 320, 559, 588, 653, 801, 988
BseLI CCNNNNNNNGG 2 cut(s) 15, 380
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 4 cut(s) 223, 260, 779, 966
BseNI ACTGG 3 cut(s) 71, 93, 109
BseSI GKGCMC 2 cut(s) 154, 479
BseXI GCAGC 3 cut(s) 116, 976, 1099
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 410, 656
BsiHKAI GWGCWC 2 cut(s) 479, 1045
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 165, 183
BslFI GGGAC 3 cut(s) 412, 850, 949
BslI CCNNNNNNNGG 2 cut(s) 15, 380
BsmAI GTCTC 5 cut(s) 29, 114, 239, 249, 1085
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 3 cut(s) 412, 850, 949
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 5 cut(s) 154, 363, 479, 727, 1045
Bsp143I GATC 2 cut(s) 613, 709
BspACI CCGC 2 cut(s) 384, 654
BspCNI CTCAG 4 cut(s) 222, 259, 778, 967
BspLI GGNNCC 3 cut(s) 181, 759, 1031
BspPI GGATC 2 cut(s) 608, 717
BspTNI GGTCTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 776
BsrI ACTGG 3 cut(s) 71, 93, 109
BssECI CCNNGG 2 cut(s) 9, 1107
BssMI GATC 2 cut(s) 613, 709
BssT1I CCWWGG 1 cut(s) 1107
Bst2UI CCWGG 2 cut(s) 11, 645
Bst4CI ACNGT 6 cut(s) 266, 311, 481, 841, 963, 1047
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 456, 494, 626
BstDEI CTNAG 7 cut(s) 209, 226, 246, 765, 942, 975, 1118
BstEII GGTNACC 1 cut(s) 673
BstF5I GGATG 8 cut(s) 289, 295, 320, 559, 588, 653, 801, 988
BstKTI GATC 2 cut(s) 616, 712
BstMAI GTCTC 5 cut(s) 29, 114, 239, 249, 1085
BstMBI GATC 2 cut(s) 613, 709
BstMWI GCNNNNNNNGC 7 cut(s) 129, 338, 404, 464, 634, 766, 1112
BstNI CCWGG 2 cut(s) 11, 645
BstNSI RCATGY 1 cut(s) 496
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 2 cut(s) 9, 643
BstSFI CTRYAG 1 cut(s) 1002
BstSLI GKGCMC 2 cut(s) 154, 479
BstV1I GCAGC 3 cut(s) 116, 976, 1099
BtsCI GGATG 8 cut(s) 289, 295, 320, 559, 588, 653, 801, 988
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 456, 494, 626
Cfr13I GGNCC 5 cut(s) 180, 556, 758, 871, 1030
Csp6I GTAC 2 cut(s) 437, 865
CviAII CATG 2 cut(s) 410, 493
CviQI GTAC 2 cut(s) 437, 865
DdeI CTNAG 7 cut(s) 209, 226, 246, 765, 942, 975, 1118
DpnI GATC 2 cut(s) 615, 711
DpnII GATC 2 cut(s) 613, 709
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 121, 585
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 1107
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 363, 727
Eco31I GGTCTC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 180, 1030
Eco57I CTGAAG 4 cut(s) 387, 775, 860, 938
Eco88I CYCGRG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 673
EcoO109I RGGNCCY 2 cut(s) 758, 871
EcoO65I GGTNACC 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 9, 643
EcoRV GATATC 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 1107
EcoT38I GRGCYC 2 cut(s) 363, 727
ErhI CCWWGG 1 cut(s) 1107
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 2 cut(s) 413, 496
FaqI GGGAC 3 cut(s) 412, 850, 949
FatI CATG 2 cut(s) 409, 492
FauI CCCGC 1 cut(s) 377
FblI GTMKAC 2 cut(s) 306, 693
Fnu4HI GCNGC 4 cut(s) 130, 655, 990, 1113
FokI GGATG 8 cut(s) 296, 302, 307, 546, 575, 660, 808, 995
FriOI GRGCYC 2 cut(s) 363, 727
Fsp4HI GCNGC 4 cut(s) 130, 655, 990, 1113
FspBI CTAG 1 cut(s) 431
GluI GCNGC 4 cut(s) 130, 655, 990, 1113
GsaI CCCAGC 1 cut(s) 360
HapII CCGG 2 cut(s) 165, 183
Hin1II CATG 2 cut(s) 413, 496
HinfI GANTC 4 cut(s) 370, 548, 640, 971
HpaII CCGG 2 cut(s) 165, 183
HphI GGTGA 3 cut(s) 254, 287, 698
Hpy166II GTNNAC 4 cut(s) 307, 416, 477, 694
Hpy188I TCNGA 3 cut(s) 86, 976, 1059
Hpy188III TCNNGA 2 cut(s) 704, 793
Hpy8I GTNNAC 4 cut(s) 307, 416, 477, 694
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 6 cut(s) 274, 503, 771, 884, 913, 1070
HpyCH4III ACNGT 6 cut(s) 266, 311, 481, 841, 963, 1047
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 7 cut(s) 129, 338, 404, 464, 634, 766, 1112
HpyF3I CTNAG 7 cut(s) 209, 226, 246, 765, 942, 975, 1118
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 413, 496
Kzo9I GATC 2 cut(s) 613, 709
LmnI GCTCC 5 cut(s) 338, 451, 651, 907, 1040
Lsp1109I GCAGC 3 cut(s) 116, 976, 1099
LweI GCATC 4 cut(s) 187, 611, 786, 976
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 5 cut(s) 73, 95, 486, 673, 809
MalI GATC 2 cut(s) 615, 711
MbiI CCGCTC 1 cut(s) 654
MboI GATC 2 cut(s) 613, 709
MboII GAAGA 3 cut(s) 38, 206, 1085
MhlI GDGCHC 5 cut(s) 154, 363, 479, 727, 1045
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 4 cut(s) 253, 375, 601, 778
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 1 cut(s) 364
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 3 cut(s) 257, 300, 927
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 587
MspI CCGG 2 cut(s) 165, 183
MspR9I CCNGG 2 cut(s) 11, 645
MvaI CCWGG 2 cut(s) 11, 645
MwoI GCNNNNNNNGC 7 cut(s) 129, 338, 404, 464, 634, 766, 1112
NdeII GATC 2 cut(s) 613, 709
NlaIII CATG 2 cut(s) 413, 496
NlaIV GGNNCC 3 cut(s) 181, 759, 1031
NmuCI GTSAC 2 cut(s) 486, 809
NspI RCATGY 1 cut(s) 496
PaeI GCATGC 1 cut(s) 496
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 3 cut(s) 548, 640, 971
PflMI CCANNNNNTGG 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 643
PkrI GCNGC 4 cut(s) 131, 656, 991, 1114
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PsiI TTATAA 1 cut(s) 1130
Psp6I CCWGG 2 cut(s) 9, 643
PspEI GGTNACC 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 2 cut(s) 9, 643
PspN4I GGNNCC 3 cut(s) 181, 759, 1031
PspPI GGNCC 5 cut(s) 180, 556, 758, 871, 1030
RsaI GTAC 2 cut(s) 438, 866
RsaNI GTAC 2 cut(s) 437, 865
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 257, 300, 927
SatI GCNGC 4 cut(s) 130, 655, 990, 1113
Sau3AI GATC 2 cut(s) 613, 709
Sau96I GGNCC 5 cut(s) 180, 556, 758, 871, 1030
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 11, 645
SduI GDGCHC 5 cut(s) 154, 363, 479, 727, 1045
SfaNI GCATC 4 cut(s) 187, 611, 786, 976
SfcI CTRYAG 1 cut(s) 1002
SinI GGWCC 2 cut(s) 180, 1030
SmiI ATTTAAAT 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 482
SphI GCATGC 1 cut(s) 496
Sse9I AATT 4 cut(s) 253, 375, 601, 778
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 2 cut(s) 384, 654
SspMI CTAG 1 cut(s) 431
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 9, 643
StyI CCWWGG 1 cut(s) 1107
SwaI ATTTAAAT 1 cut(s) 258
TaaI ACNGT 6 cut(s) 266, 311, 481, 841, 963, 1047
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 502
TasI AATT 4 cut(s) 253, 375, 601, 778
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 3 cut(s) 548, 640, 971
Tru1I TTAA 3 cut(s) 257, 300, 927
Tru9I TTAA 3 cut(s) 257, 300, 927
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 2 cut(s) 486, 809
TseI GCWGC 3 cut(s) 129, 989, 1112
Tsp45I GTSAC 2 cut(s) 486, 809
TspDTI ATGAA 5 cut(s) 16, 38, 207, 811, 985
TspGWI ACGGA 5 cut(s) 137, 414, 613, 1022, 1034
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 180, 1030
XapI RAATTY 2 cut(s) 601, 778
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmiI GTMKAC 2 cut(s) 306, 693
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.