Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Reverse (-)

53038438 .. 53039157

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0414400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTTCAGGACTGAAAGTACTGAGCTCTGGCAATTCTATTCTGTGGCAGGTGAAGGAATGCACATCAGCCTTGCTGCGTTTTGCGAAGAGGACTAACATCCCTGTTTTCTTGATTGGGCATGTAACCAAATCTGGAGAGATTGCTGGACCTCGTCTTTTGGAGCATATTGTTGATGTTGTGCTATACATAGAAGTTGGGGGAGAAGCACTCATCTTATCGTTTACTTCGACTGTGAAAAATCGTTTTGGATCCACTGATGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

89

Amino Acids

9.63

Weight (kDa)

7.93

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AclWI	GGATC	2 cut(s)	246, 259
AfaI	GTAC	1 cut(s)	21
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	246, 259
ApeKI	GCWGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	246, 259
BssMI	GATC	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	3 cut(s)	5, 27, 71
CviKI_1	RGCY	3 cut(s)	5, 27, 71
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	125
FaiI	YATR	5 cut(s)	123, 168, 187, 191, 268
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	9, 112, 135
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	15, 35, 117, 120, 132
Lsp1109I	GCAGC	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	34
MnlI	CCTC	3 cut(s)	84, 162, 256
Mva1269I	GAATGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	125
PaqCI	CACCTGC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	251
PsyI	GACNNNGTC	1 cut(s)	153
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	29, 54, 154, 267
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	34
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	19
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	76
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	149
XceI	RCATGY	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.