Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Forward (+)

19022140 .. 19026938

Gene Structure 4799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAAGCCCTGGCAAGCTCTGTGTTCATACCCGAGACGTTTCCACTTCATAGCAACAACAACAACAACCACCCAGTTACTTCATTCAGAACACCCAATAACCGAACTGGGTCTCTCAAAATCGGCCAAAGCTGCCATTTTGTCGGCCTCCGTGCTCAACCTCTCTCCGGCGAGGCTTCTGGGTCCGGTGAGAATGAAGATGCAAGGCCTCTCAGTAGTGGCTTTGGCTTAGATAGTCTCTCTTTGTCTCAGGGTAATTTAAATCACTGTGAAAGTGGTGAGAAGGATGTGGATGAGGCATTTAATGTAGACAGTTCTCATACATCCCATTCTGCAAATGGAGCAGGAGGAACAAGAGCTGGGCTCTTTAGGACTCCGATTTCTGGCGGGGTGCAGAGTGCAACTTCAGCTCATGGTTTACCTCGTCCATCCCTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATTTGTGCACTGTGATGTCGCGCATGCACCATCGACGAGAAGGATATCCATTTGGTTCGCTGGTTGATTTTGCACCTGATTCAATGGGCCATCCTATCTTTTCGTTTTCCCCATTGGCCATCCACACACGGAATTTGTTAGCTGATCCAAGATGCACGCTTGTTGTGCAGATTCCTGGATGGAGCGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGGATCAGCAGGAATGGGCTCATAAGCAATACATAGCAAAACATCAGCAGGGGCCTTCTCAGCAATGGGGAAATTTCTACTACTTCAGGATGCAGAACATAAGTGACATTTATTTCATTGGTGGCTTTGGGACTGTCGCTTGGGTTGATGTGAAAGAATACGAGGCCCTTCAGCCTGATAAGATTGCAGTTGATGGAGGGGAGCAAAACCTGAAGGAACTTAATGCAATCTTTTCAAAGCCCCTAAAAGAGCTACTGTCCCATGAATCTGAGGTGGATGATGCTGCTTTCATCTCTATAGACAGCAAAGGAACCGATATTCGGGTCCGTCAGGGAGCACAGTTCAACATTCAGAGGCTATCATTTGAAGAAGGCCATTCTGTTGAGACATTAGAGGAAGCCAAGGATGCTCTTAGGAAACTTATAAACAAAGGCCGAGTGCATAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

386

Amino Acids

42.38

Weight (kDa)

6.01

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	148 - 291	2.6e-18	CREG, beta-barrel
PNPOx_N	PF01243	148 - 257	2.1e-06	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AccBSI	CCGCTC	1 cut(s)	657
AccI	GTMKAC	2 cut(s)	309, 696
AccII	CGCG	1 cut(s)	493
AciI	CCGC	2 cut(s)	387, 657
AclWI	GGATC	2 cut(s)	611, 720
AcoI	YGGCCR	2 cut(s)	124, 588
AcsI	RAATTY	2 cut(s)	604, 781
AcuI	CTGAAG	4 cut(s)	390, 778, 863, 941
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	3 cut(s)	167, 383, 1029
AgsI	TTSAA	4 cut(s)	555, 945, 1054, 1076
AjnI	CCWGG	2 cut(s)	9, 646
AluBI	AGCT	7 cut(s)	18, 132, 359, 410, 437, 614, 961
AluI	AGCT	7 cut(s)	18, 132, 359, 410, 437, 614, 961
Alw21I	GWGCWC	3 cut(s)	157, 482, 1048
Alw26I	GTCTC	5 cut(s)	29, 117, 242, 252, 1088
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	2 cut(s)	611, 720
Ama87I	CYCGRG	1 cut(s)	32
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	132, 992
ApoI	RAATTY	2 cut(s)	604, 781
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	5 cut(s)	183, 559, 761, 874, 1033
AsuHPI	GGTGA	3 cut(s)	200, 290, 701
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	183, 1033
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	2 cut(s)	366, 730
Bbv12I	GWGCWC	3 cut(s)	157, 482, 1048
BbvI	GCAGC	2 cut(s)	119, 979
BccI	CCATC	6 cut(s)	436, 510, 570, 599, 645, 896
BciT130I	CCWGG	2 cut(s)	11, 648
BcoDI	GTCTC	5 cut(s)	29, 117, 242, 252, 1088
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	1005
BisI	GCNGC	3 cut(s)	133, 658, 993
BlsI	GCNGC	3 cut(s)	134, 659, 994
Bme1390I	CCNGG	2 cut(s)	11, 648
Bme18I	GGWCC	2 cut(s)	183, 1033
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	5 cut(s)	183, 559, 761, 874, 1033
BmiI	GGNNCC	4 cut(s)	184, 762, 1021, 1034
BmrFI	CCNGG	2 cut(s)	11, 648
BmrI	ACTGGG	2 cut(s)	68, 117
BmsI	GCATC	5 cut(s)	190, 614, 789, 979, 1105
BmuI	ACTGGG	2 cut(s)	68, 117
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	9, 1110
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 383, 1029
Bse1I	ACTGG	2 cut(s)	74, 112
Bse3DI	GCAATG	1 cut(s)	779
BseBI	CCWGG	2 cut(s)	11, 648
BseDI	CCNNGG	2 cut(s)	9, 1110
BseLI	CCNNNNNNNGG	3 cut(s)	167, 383, 1029
BseMI	GCAATG	1 cut(s)	779
BseMII	CTCAG	4 cut(s)	226, 263, 782, 969
BseNI	ACTGG	2 cut(s)	74, 112
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	119, 979
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	2 cut(s)	413, 659
Bsh1236I	CGCG	1 cut(s)	493
BsiHKAI	GWGCWC	3 cut(s)	157, 482, 1048
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	168, 186
BslFI	GGGAC	2 cut(s)	853, 952
BslI	CCNNNNNNNGG	3 cut(s)	167, 383, 1029
BsmAI	GTCTC	5 cut(s)	29, 117, 242, 252, 1088
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	853, 952
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	5 cut(s)	157, 366, 482, 730, 1048
Bsp143I	GATC	2 cut(s)	616, 712
BspACI	CCGC	2 cut(s)	387, 657
BspCNI	CTCAG	4 cut(s)	225, 262, 781, 970
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	4 cut(s)	184, 762, 1021, 1034
BspPI	GGATC	2 cut(s)	611, 720
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	779
BsrI	ACTGG	2 cut(s)	74, 112
BssECI	CCNNGG	2 cut(s)	9, 1110
BssMI	GATC	2 cut(s)	616, 712
BssT1I	CCWWGG	1 cut(s)	1110
Bst2UI	CCWGG	2 cut(s)	11, 648
Bst4CI	ACNGT	6 cut(s)	269, 314, 484, 844, 966, 1050
BstC8I	GCNNGC	4 cut(s)	16, 459, 497, 629
BstDEI	CTNAG	6 cut(s)	212, 229, 249, 768, 978, 1121
BstEII	GGTNACC	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	619, 715
BstMAI	GTCTC	5 cut(s)	29, 117, 242, 252, 1088
BstMBI	GATC	2 cut(s)	616, 712
BstMWI	GCNNNNNNNGC	7 cut(s)	132, 341, 407, 467, 637, 769, 1115
BstNI	CCWGG	2 cut(s)	11, 648
BstNSI	RCATGY	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	9, 646
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	119, 979
BtsIMutI	CAGTG	2 cut(s)	265, 480
Cac8I	GCNNGC	4 cut(s)	16, 459, 497, 629
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	5 cut(s)	183, 559, 761, 874, 1033
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	413, 496, 971
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	6 cut(s)	212, 229, 249, 768, 978, 1121
DpnI	GATC	2 cut(s)	618, 714
DpnII	GATC	2 cut(s)	616, 712
DraI	TTTAAA	1 cut(s)	261
EaeI	YGGCCR	2 cut(s)	124, 588
Eco130I	CCWWGG	1 cut(s)	1110
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	366, 730
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	183, 1033
Eco57I	CTGAAG	4 cut(s)	390, 778, 863, 941
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	676
EcoO109I	RGGNCCY	2 cut(s)	761, 874
EcoO65I	GGTNACC	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	9, 646
EcoRV	GATATC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	1110
EcoT38I	GRGCYC	2 cut(s)	366, 730
ErhI	CCWWGG	1 cut(s)	1110
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	416, 499, 974
FaqI	GGGAC	2 cut(s)	853, 952
FatI	CATG	3 cut(s)	412, 495, 970
FauI	CCCGC	1 cut(s)	380
FblI	GTMKAC	2 cut(s)	309, 696
Fnu4HI	GCNGC	3 cut(s)	133, 658, 993
FriOI	GRGCYC	2 cut(s)	366, 730
Fsp4HI	GCNGC	3 cut(s)	133, 658, 993
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	3 cut(s)	133, 658, 993
GsaI	CCCAGC	1 cut(s)	363
HapII	CCGG	2 cut(s)	168, 186
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	416, 499, 974
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	373, 551, 643, 974
HpaII	CCGG	2 cut(s)	168, 186
HphI	GGTGA	3 cut(s)	200, 290, 701
Hpy166II	GTNNAC	4 cut(s)	310, 419, 480, 697
Hpy188I	TCNGA	4 cut(s)	89, 378, 979, 1062
Hpy188III	TCNNGA	2 cut(s)	707, 796
Hpy8I	GTNNAC	4 cut(s)	310, 419, 480, 697
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	6 cut(s)	277, 506, 774, 887, 916, 1073
HpyCH4III	ACNGT	6 cut(s)	269, 314, 484, 844, 966, 1050
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	7 cut(s)	132, 341, 407, 467, 637, 769, 1115
HpyF3I	CTNAG	6 cut(s)	212, 229, 249, 768, 978, 1121
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	416, 499, 974
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	616, 712
LmnI	GCTCC	5 cut(s)	341, 454, 654, 910, 1043
Lsp1109I	GCAGC	2 cut(s)	119, 979
LweI	GCATC	5 cut(s)	190, 614, 789, 979, 1105
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	3 cut(s)	76, 676, 812
MalI	GATC	2 cut(s)	618, 714
MbiI	CCGCTC	1 cut(s)	657
MboI	GATC	2 cut(s)	616, 712
MboII	GAAGA	2 cut(s)	209, 1088
MhlI	GDGCHC	5 cut(s)	157, 366, 482, 730, 1048
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	3 cut(s)	256, 604, 781
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	367
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	3 cut(s)	260, 303, 930
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	2 cut(s)	168, 186
MspR9I	CCNGG	2 cut(s)	11, 648
MvaI	CCWGG	2 cut(s)	11, 648
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	7 cut(s)	132, 341, 407, 467, 637, 769, 1115
NdeII	GATC	2 cut(s)	616, 712
NlaIII	CATG	3 cut(s)	416, 499, 974
NlaIV	GGNNCC	4 cut(s)	184, 762, 1021, 1034
NmuCI	GTSAC	1 cut(s)	812
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	551, 643, 974
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	134, 659, 994
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	1133
Psp6I	CCWGG	2 cut(s)	9, 646
PspEI	GGTNACC	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	9, 646
PspN4I	GGNNCC	4 cut(s)	184, 762, 1021, 1034
PspPI	GGNCC	5 cut(s)	183, 559, 761, 874, 1033
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	3 cut(s)	260, 303, 930
SatI	GCNGC	3 cut(s)	133, 658, 993
Sau3AI	GATC	2 cut(s)	616, 712
Sau96I	GGNCC	5 cut(s)	183, 559, 761, 874, 1033
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	11, 648
SduI	GDGCHC	5 cut(s)	157, 366, 482, 730, 1048
SfaNI	GCATC	5 cut(s)	190, 614, 789, 979, 1105
SfcI	CTRYAG	1 cut(s)	1005
SinI	GGWCC	2 cut(s)	183, 1033
SmiI	ATTTAAAT	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	3 cut(s)	256, 604, 781
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	387, 657
SspMI	CTAG	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	9, 646
StyI	CCWWGG	1 cut(s)	1110
SwaI	ATTTAAAT	1 cut(s)	261
TaaI	ACNGT	6 cut(s)	269, 314, 484, 844, 966, 1050
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	505
TasI	AATT	3 cut(s)	256, 604, 781
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	551, 643, 974
Tru1I	TTAA	3 cut(s)	260, 303, 930
Tru9I	TTAA	3 cut(s)	260, 303, 930
TscAI	CASTG	2 cut(s)	272, 487
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	2 cut(s)	132, 992
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	7 cut(s)	16, 38, 72, 210, 814, 987, 988
TspGWI	ACGGA	3 cut(s)	140, 616, 1025
TspRI	CASTG	2 cut(s)	272, 487
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	183, 1033
XapI	RAATTY	2 cut(s)	604, 781
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	309, 696
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.