Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Reverse (-)

53039410 .. 53046642

Gene Structure 7233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0414500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAAGGCTTCAGAGCGATTTGCACCCTGAAACGCCTTCTCAAACCCACCACCCTCCCAAACCCATCTCTCATTCCCTTCCAATCCCTCCAAAACCCCACCTTTTCCCGCCATTTCCCCTCCACCGGCCATCTCCGCCACACCGAAGAACCCAACTCCGGCGAAAACAAAATGGGTCCGTCAAGTTTGGTCAATGTGGTCAGTGAGATCGAGAAGGGTACGGCTGACAGGAGCGTTGGGAAGGTGAGATCAGGAACTGGGTCGGTTAGTGGGATTCGGGTCTCGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGGATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCGACAGTGCTTGGTGGTGGTATTGTACCAGTTGGTGGTGATCCTGGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGAGTATTGAGCAAATTGGGAGCAAAGCTGACCGTATGGGGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTGCTGATATTGAGGATGTATTCGAGGAAAGTTGGTCTCTGGCTCCTCAGGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCTGGACTTCTGGTTGGAGTTTTTACTTGTAACATACCAAGCATATGATCAAATTCTAGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

269

Amino Acids

29.1

Weight (kDa)

7.03

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	386, 443
AciI	CCGC	4 cut(s)	109, 136, 331, 373
AclWI	GGATC	2 cut(s)	443, 615
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	795
AfaI	GTAC	4 cut(s)	220, 435, 469, 620
AfiI	CCNNNNNNNGG	5 cut(s)	125, 158, 386, 443, 458
AgsI	TTSAA	2 cut(s)	337, 698
AjnI	CCWGG	2 cut(s)	451, 730
AloI	GAACNNNNNNTCC	2 cut(s)	726, 758
AluBI	AGCT	3 cut(s)	500, 514, 581
AluI	AGCT	3 cut(s)	500, 514, 581
Alw26I	GTCTC	3 cut(s)	286, 547, 666
AlwI	GGATC	2 cut(s)	443, 615
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	256, 304, 458, 560
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	73, 138
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	453, 732
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	286, 547, 666
BfaI	CTAG	1 cut(s)	800
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	453, 732
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	177, 391, 669
BmrFI	CCNGG	2 cut(s)	453, 732
BmrI	ACTGGG	2 cut(s)	267, 358
BmsI	GCATC	1 cut(s)	533
BmuI	ACTGGG	2 cut(s)	267, 358
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	607
BsaI	GGTCTC	2 cut(s)	286, 666
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 158, 386, 443, 458
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	262, 353, 437
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	453, 732
BseGI	GGATG	2 cut(s)	524, 646
BseLI	CCNNNNNNNGG	5 cut(s)	125, 158, 386, 443, 458
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	686
BseNI	ACTGG	3 cut(s)	262, 353, 437
BseRI	GAGGAG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	126, 159, 546
BslI	CCNNNNNNNGG	5 cut(s)	125, 158, 386, 443, 458
BsmAI	GTCTC	3 cut(s)	286, 547, 666
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	2 cut(s)	286, 666
Bsp143I	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
BspACI	CCGC	4 cut(s)	109, 136, 331, 373
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	177, 391, 669
BspPI	GGATC	2 cut(s)	443, 615
BspTNI	GGTCTC	2 cut(s)	286, 666
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	262, 353, 437
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
Bst2UI	CCWGG	2 cut(s)	453, 732
Bst4CI	ACNGT	3 cut(s)	415, 587, 703
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	524, 646
BstKTI	GATC	6 cut(s)	210, 251, 370, 451, 610, 793
BstMAI	GTCTC	3 cut(s)	286, 547, 666
BstMBI	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 497, 674, 683
BstNI	CCWGG	2 cut(s)	453, 732
BstSCI	CCNGG	2 cut(s)	451, 730
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	524, 646
BtsIMutI	CAGTG	2 cut(s)	208, 420
Cac8I	GCNNGC	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	4 cut(s)	219, 434, 468, 619
CviAII	CATG	2 cut(s)	386, 509
CviQI	GTAC	4 cut(s)	219, 434, 468, 619
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	6 cut(s)	209, 250, 369, 450, 609, 792
DpnII	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
DraI	TTTAAA	2 cut(s)	537, 711
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	2 cut(s)	125, 388
Eco31I	GGTCTC	2 cut(s)	286, 666
Eco47I	GGWCC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	451, 730
FaeI	CATG	2 cut(s)	389, 512
FaiI	YATR	7 cut(s)	387, 497, 510, 590, 778, 787, 789
FatI	CATG	2 cut(s)	385, 508
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	2 cut(s)	511, 653
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	1 cut(s)	800
GluI	GCNGC	1 cut(s)	489
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	3 cut(s)	126, 159, 546
Hin1II	CATG	2 cut(s)	389, 512
HinfI	GANTC	3 cut(s)	274, 376, 689
HpaII	CCGG	3 cut(s)	126, 159, 546
HphI	GGTGA	4 cut(s)	256, 304, 458, 560
Hpy166II	GTNNAC	2 cut(s)	346, 470
Hpy188I	TCNGA	3 cut(s)	14, 286, 809
Hpy188III	TCNNGA	5 cut(s)	211, 252, 481, 746, 800
Hpy8I	GTNNAC	2 cut(s)	346, 470
HpyAV	CCTTC	6 cut(s)	47, 88, 208, 235, 283, 310
HpyCH4III	ACNGT	3 cut(s)	415, 587, 703
HpyCH4V	TGCA	3 cut(s)	24, 385, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 497, 674, 683
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	389, 512
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
LmnI	GCTCC	3 cut(s)	231, 573, 673
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	533
MaeI	CTAG	1 cut(s)	800
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	6 cut(s)	209, 250, 369, 450, 609, 792
MboI	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
MboII	GAAGA	2 cut(s)	158, 563
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	3 cut(s)	567, 681, 795
MmeI	TCCRAC	2 cut(s)	341, 738
MnlI	CCTC	9 cut(s)	65, 98, 130, 288, 598, 631, 643, 681, 728
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	321, 536, 597, 710
MspI	CCGG	3 cut(s)	126, 159, 546
MspR9I	CCNGG	2 cut(s)	453, 732
MvaI	CCWGG	2 cut(s)	453, 732
MwoI	GCNNNNNNNGC	4 cut(s)	135, 497, 674, 683
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
NlaIII	CATG	2 cut(s)	389, 512
NlaIV	GGNNCC	3 cut(s)	177, 391, 669
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	274, 376, 689
PflMI	CCANNNNNTGG	2 cut(s)	386, 443
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	451, 730
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	451, 730
PspN4I	GGNNCC	3 cut(s)	177, 391, 669
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	4 cut(s)	220, 435, 469, 620
RsaNI	GTAC	4 cut(s)	219, 434, 468, 619
SaqAI	TTAA	4 cut(s)	321, 536, 597, 710
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	6 cut(s)	207, 248, 367, 448, 607, 790
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	453, 732
SetI	ASST	9 cut(s)	104, 246, 294, 299, 321, 395, 502, 516, 583
SfaNI	GCATC	1 cut(s)	533
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	3 cut(s)	567, 681, 795
SsiI	CCGC	4 cut(s)	109, 136, 331, 373
SspMI	CTAG	1 cut(s)	800
StyD4I	CCNGG	2 cut(s)	451, 730
TaaI	ACNGT	3 cut(s)	415, 587, 703
TaqI	TCGA	2 cut(s)	210, 648
TasI	AATT	3 cut(s)	567, 681, 795
TatI	WGTACW	2 cut(s)	467, 618
TfiI	GAWTC	3 cut(s)	274, 376, 689
Tru1I	TTAA	4 cut(s)	321, 536, 597, 710
Tru9I	TTAA	4 cut(s)	321, 536, 597, 710
TscAI	CASTG	2 cut(s)	208, 420
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	17, 417, 695
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	208, 420
Van91I	CCANNNNNTGG	2 cut(s)	386, 443
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	795
XbaI	TCTAGA	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.