Rw2G038700

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008585
Physical Location & Seq
Reverse (-)
63583834 .. 63587518
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038700.1

Sequence Viewer

Length: 1152 bp
ATGGAAGCCCTGGCAAGGTCTGTGTTCATACCCGAGACGTTTCCACTTCACAACAACAACAACCCAGTTACTTCAATCAGAACACCCAATAACCGAACTGGGTCTCTGAAAATCGGCCAAAGCTGCCATTTTTTGGGCCTCCGTGCCCAAGCTCTCTCCGGCGAGGCTTCTGGGTCCGGCGAGAATGAAGATGCAAGGCCTCTCAGTAGTGGCTTTGGCTTAGATAGTCTCTCTTTGTCTCAGGGTAATTTAAATCACCGTGAAAGTGGTGAGAAGGATGTGGATGAGGCATTTAATGTAGCCAGTTCTCTTACATCCCATTCTGCAAGTGGAGCAGGAGGAACAAGAGCTGGGCTCTTTAGGACTCCAATTTCTGGCGGGGTGCAGAGTGCAACTTCAGCTCATGGTTTACCTCGTCCATCCCTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATTTGTGCACTGTGATGTCACGCATGCACCATCGACGAGAAGGATATCCATTTGGTTCGCTGGTTGATTTTGCACCTGATTCAATGGGCCATCCTATCTTTTCGTTTTCCCCATTGGCCATCCACACACGGAATTTGTTAGCTGATCCAAGATGCACGCTTGTTGTGCAGATTCCTGGATGGAGCGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGGATCAGCAGGAATGGGCTCATAAACAATACATAGCAAAACATCAACAGGGGCCTTCGCAGCAATGGGGAAATTTCTACTACTTCAGGATGCAGAACATAAGTGACATTTATTTCATTGGTGGCTTTGGGACTGTCGCTTGGGTTGATGTGAAAGAGTACGAGGCCCTTCAGCCTGATAAGATTGCAGTTGATGGAGGGGAGCAAAACCTGAAGGAACTTAATGCAATCTTTTCAAAGCCCCTAAAAGAGCTACTGTCCCTTGAATCTGAGGTGGATGATGCTGCTTTCATCTCTATAGACAGCAAAGGAACGGATATTCGGGTCCGTCAGGGAGCACAGTTCAACATTCAGAGGCTATCATTTGAAGAAGGCCATTCTGTTGAGACATTAGAGGAAGCCAAGGCTGCTCTTAGGAAACTTATAAACAAAGGCCGAGTGCATAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

383

Amino Acids

41.96

Weight (kDa)

6.27

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CREG_beta-barrel PF13883 145 - 288 2.6e-18 CREG, beta-barrel
PNPOx_N PF01243 145 - 254 2e-06 Pyridoxamine 5'-phosphate oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1124
AccB7I CCANNNNNTGG 2 cut(s) 133, 374
AccBSI CCGCTC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 687
AciI CCGC 2 cut(s) 378, 648
AclWI GGATC 2 cut(s) 602, 711
AcoI YGGCCR 2 cut(s) 115, 579
AcsI RAATTY 2 cut(s) 595, 772
AcuI CTGAAG 4 cut(s) 381, 769, 854, 932
AfaI GTAC 2 cut(s) 432, 860
AfiI CCNNNNNNNGG 3 cut(s) 15, 133, 374
AgsI TTSAA 6 cut(s) 75, 546, 936, 965, 1045, 1067
AjnI CCWGG 2 cut(s) 9, 637
AluBI AGCT 7 cut(s) 123, 152, 350, 401, 428, 605, 952
AluI AGCT 7 cut(s) 123, 152, 350, 401, 428, 605, 952
Alw21I GWGCWC 2 cut(s) 473, 1039
Alw26I GTCTC 5 cut(s) 29, 108, 233, 243, 1079
Alw44I GTGCAC 1 cut(s) 469
AlwI GGATC 2 cut(s) 602, 711
Ama87I CYCGRG 1 cut(s) 32
ApaLI GTGCAC 1 cut(s) 469
ApeKI GCWGC 4 cut(s) 123, 760, 983, 1106
ApoI RAATTY 2 cut(s) 595, 772
AspS9I GGNCC 6 cut(s) 136, 174, 550, 752, 865, 1024
AsuHPI GGTGA 3 cut(s) 248, 281, 692
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 2 cut(s) 174, 1024
BaeGI GKGCMC 2 cut(s) 148, 473
BalI TGGCCA 1 cut(s) 581
BanII GRGCYC 2 cut(s) 357, 721
Bbv12I GWGCWC 2 cut(s) 473, 1039
BbvI GCAGC 4 cut(s) 110, 772, 970, 1093
BccI CCATC 6 cut(s) 427, 501, 561, 590, 636, 887
BciT130I CCWGG 2 cut(s) 11, 639
BcoDI GTCTC 5 cut(s) 29, 108, 233, 243, 1079
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 996
BisI GCNGC 5 cut(s) 124, 649, 761, 984, 1107
BlsI GCNGC 5 cut(s) 125, 650, 762, 985, 1108
Bme1390I CCNGG 2 cut(s) 11, 639
Bme18I GGWCC 2 cut(s) 174, 1024
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 6 cut(s) 136, 174, 550, 752, 865, 1024
BmiI GGNNCC 3 cut(s) 175, 753, 1025
BmrFI CCNGG 2 cut(s) 11, 639
BmrI ACTGGG 2 cut(s) 59, 108
BmsI GCATC 4 cut(s) 181, 605, 780, 970
BmuI ACTGGG 2 cut(s) 59, 108
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 9, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 133, 374
Bse1I ACTGG 3 cut(s) 65, 103, 303
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 2 cut(s) 11, 639
BseDI CCNNGG 2 cut(s) 9, 1101
BseGI GGATG 9 cut(s) 283, 289, 314, 419, 553, 582, 647, 795, 982
BseLI CCNNNNNNNGG 3 cut(s) 15, 133, 374
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 3 cut(s) 217, 254, 960
BseNI ACTGG 3 cut(s) 65, 103, 303
BseSI GKGCMC 2 cut(s) 148, 473
BseXI GCAGC 4 cut(s) 110, 772, 970, 1093
BseYI CCCAGC 1 cut(s) 350
BsgI GTGCAG 2 cut(s) 404, 650
BsiHKAI GWGCWC 2 cut(s) 473, 1039
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 159, 177
BslFI GGGAC 2 cut(s) 844, 943
BslI CCNNNNNNNGG 3 cut(s) 15, 133, 374
BsmAI GTCTC 5 cut(s) 29, 108, 233, 243, 1079
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 844, 943
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 5 cut(s) 148, 357, 473, 721, 1039
Bsp143I GATC 2 cut(s) 607, 703
BspACI CCGC 2 cut(s) 378, 648
BspCNI CTCAG 3 cut(s) 216, 253, 961
BspLI GGNNCC 3 cut(s) 175, 753, 1025
BspPI GGATC 2 cut(s) 602, 711
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 770
BsrI ACTGG 3 cut(s) 65, 103, 303
BssECI CCNNGG 2 cut(s) 9, 1101
BssMI GATC 2 cut(s) 607, 703
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 11, 639
Bst4CI ACNGT 5 cut(s) 260, 475, 835, 957, 1041
BstC8I GCNNGC 3 cut(s) 450, 488, 620
BstDEI CTNAG 5 cut(s) 203, 220, 240, 969, 1112
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 9 cut(s) 283, 289, 314, 419, 553, 582, 647, 795, 982
BstKTI GATC 2 cut(s) 610, 706
BstMAI GTCTC 5 cut(s) 29, 108, 233, 243, 1079
BstMBI GATC 2 cut(s) 607, 703
BstMWI GCNNNNNNNGC 7 cut(s) 123, 332, 398, 458, 628, 760, 1106
BstNI CCWGG 2 cut(s) 11, 639
BstNSI RCATGY 1 cut(s) 490
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 9, 637
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 2 cut(s) 148, 473
BstV1I GCAGC 4 cut(s) 110, 772, 970, 1093
BtsCI GGATG 9 cut(s) 283, 289, 314, 419, 553, 582, 647, 795, 982
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 3 cut(s) 450, 488, 620
Cfr13I GGNCC 6 cut(s) 136, 174, 550, 752, 865, 1024
Csp6I GTAC 2 cut(s) 431, 859
CviAII CATG 2 cut(s) 404, 487
CviQI GTAC 2 cut(s) 431, 859
DdeI CTNAG 5 cut(s) 203, 220, 240, 969, 1112
DpnI GATC 2 cut(s) 609, 705
DpnII GATC 2 cut(s) 607, 703
DraI TTTAAA 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 115, 579
Eco130I CCWWGG 1 cut(s) 1101
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 357, 721
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 509
Eco47I GGWCC 2 cut(s) 174, 1024
Eco57I CTGAAG 4 cut(s) 381, 769, 854, 932
Eco88I CYCGRG 1 cut(s) 32
Eco91I GGTNACC 1 cut(s) 667
EcoO109I RGGNCCY 2 cut(s) 752, 865
EcoO65I GGTNACC 1 cut(s) 667
EcoRII CCWGG 2 cut(s) 9, 637
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 1101
EcoT38I GRGCYC 2 cut(s) 357, 721
ErhI CCWWGG 1 cut(s) 1101
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 2 cut(s) 407, 490
FaqI GGGAC 2 cut(s) 844, 943
FatI CATG 2 cut(s) 403, 486
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 5 cut(s) 124, 649, 761, 984, 1107
FokI GGATG 9 cut(s) 290, 296, 301, 406, 540, 569, 654, 802, 989
FriOI GRGCYC 2 cut(s) 357, 721
Fsp4HI GCNGC 5 cut(s) 124, 649, 761, 984, 1107
FspBI CTAG 1 cut(s) 425
GluI GCNGC 5 cut(s) 124, 649, 761, 984, 1107
GsaI CCCAGC 1 cut(s) 354
HapII CCGG 2 cut(s) 159, 177
Hin1II CATG 2 cut(s) 407, 490
HinfI GANTC 4 cut(s) 364, 542, 634, 965
HpaII CCGG 2 cut(s) 159, 177
HphI GGTGA 3 cut(s) 248, 281, 692
Hpy166II GTNNAC 3 cut(s) 410, 471, 688
Hpy188I TCNGA 4 cut(s) 80, 108, 970, 1053
Hpy188III TCNNGA 2 cut(s) 698, 787
Hpy8I GTNNAC 3 cut(s) 410, 471, 688
Hpy99I CGWCG 1 cut(s) 501
HpyAV CCTTC 6 cut(s) 268, 497, 765, 878, 907, 1064
HpyCH4III ACNGT 5 cut(s) 260, 475, 835, 957, 1041
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 332, 398, 458, 628, 760, 1106
HpyF3I CTNAG 5 cut(s) 203, 220, 240, 969, 1112
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 407, 490
Kzo9I GATC 2 cut(s) 607, 703
LmnI GCTCC 5 cut(s) 332, 445, 645, 901, 1034
Lsp1109I GCAGC 4 cut(s) 110, 772, 970, 1093
LweI GCATC 4 cut(s) 181, 605, 780, 970
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 4 cut(s) 67, 480, 667, 803
MalI GATC 2 cut(s) 609, 705
MbiI CCGCTC 1 cut(s) 648
MboI GATC 2 cut(s) 607, 703
MboII GAAGA 2 cut(s) 200, 1079
MhlI GDGCHC 5 cut(s) 148, 357, 473, 721, 1039
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 4 cut(s) 247, 369, 595, 772
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 358
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 3 cut(s) 251, 294, 921
MslI CAYNNNNRTG 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 581
MspI CCGG 2 cut(s) 159, 177
MspR9I CCNGG 2 cut(s) 11, 639
MvaI CCWGG 2 cut(s) 11, 639
MwoI GCNNNNNNNGC 7 cut(s) 123, 332, 398, 458, 628, 760, 1106
NdeII GATC 2 cut(s) 607, 703
NlaIII CATG 2 cut(s) 407, 490
NlaIV GGNNCC 3 cut(s) 175, 753, 1025
NmuCI GTSAC 2 cut(s) 480, 803
NspI RCATGY 1 cut(s) 490
PaeI GCATGC 1 cut(s) 490
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 3 cut(s) 542, 634, 965
PflMI CCANNNNNTGG 2 cut(s) 133, 374
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 5 cut(s) 125, 650, 762, 985, 1108
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PsiI TTATAA 1 cut(s) 1124
Psp6I CCWGG 2 cut(s) 9, 637
PspEI GGTNACC 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 9, 637
PspN4I GGNNCC 3 cut(s) 175, 753, 1025
PspPI GGNCC 6 cut(s) 136, 174, 550, 752, 865, 1024
RsaI GTAC 2 cut(s) 432, 860
RsaNI GTAC 2 cut(s) 431, 859
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 251, 294, 921
SatI GCNGC 5 cut(s) 124, 649, 761, 984, 1107
Sau3AI GATC 2 cut(s) 607, 703
Sau96I GGNCC 6 cut(s) 136, 174, 550, 752, 865, 1024
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 11, 639
SduI GDGCHC 5 cut(s) 148, 357, 473, 721, 1039
SfaNI GCATC 4 cut(s) 181, 605, 780, 970
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 2 cut(s) 174, 1024
SmiI ATTTAAAT 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 476
SphI GCATGC 1 cut(s) 490
Sse9I AATT 4 cut(s) 247, 369, 595, 772
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 2 cut(s) 378, 648
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 9, 637
StyI CCWWGG 1 cut(s) 1101
SwaI ATTTAAAT 1 cut(s) 252
TaaI ACNGT 5 cut(s) 260, 475, 835, 957, 1041
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 496
TasI AATT 4 cut(s) 247, 369, 595, 772
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 3 cut(s) 542, 634, 965
Tru1I TTAA 3 cut(s) 251, 294, 921
Tru9I TTAA 3 cut(s) 251, 294, 921
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 480, 803
TseI GCWGC 4 cut(s) 123, 760, 983, 1106
Tsp45I GTSAC 2 cut(s) 480, 803
TspDTI ATGAA 4 cut(s) 16, 201, 805, 979
TspGWI ACGGA 4 cut(s) 131, 607, 1016, 1028
TspRI CASTG 1 cut(s) 478
Van91I CCANNNNNTGG 2 cut(s) 133, 374
VneI GTGCAC 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 174, 1024
XapI RAATTY 2 cut(s) 595, 772
XceI RCATGY 1 cut(s) 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.