Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008585

Physical Location & Seq

Genomic Coordinates Forward (+)

13040059 .. 13044694

Gene Structure 4636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1161400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAAGCCCTCACAAGCTCTGCCTTCGTCCCGGAGGCGCACCCAGTTCTAAACAACCCCACTTCAATCAAAACGCCGAATAATCGAAGTGGATTTCTGAAAGTCGGTCAAAGTTGTCGTTTTTCGGGGATTCGGGTTCGAGCTCTCTCCGGGGAGGCCTCTGGCTCCGGCGAAAGTGAAGAGCTGAGGAATCTGAATAATGGGTTCGGCTTGCTTTCTGAAGACACACACTCTCTCTCTCAGGGTGATTTAAATCACTTTGAAGGTAGCGAGAAGAATGTGGATGAAGCATTAATGGTAGATATGTCTCTTACATCCTCTTCTGCAAGTGGAGCAGGAGGTGGAACAAGAGCTGGACTCTTTAGAACTCCAATTTCTGGCGGGGTGCAGAGTGCAACTTCAGTTCATGGTTTACCCCGTCCCGCCTTAGCTGTACGCAATCTTATGGAGCAGGCCAGATTTGCTCATTTGTGCACCGTAATGTCTCGCATGCACCACCGGCGACAAGGATATCCATTCGGTTCTCTAGTTGATTTTGCACCTGATTCATCAGGGCATCCTATATTTTCGTTTTCGCCGTTGGCCATCCACACAAGGAATTTGTTAGCTGATCCAAGATGCACACTTGTTGTGCAGATTCCTGGATGGAGCGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGCATCAACAGGAATGGGCTCATAAGCAATACATAGCAAAGCATCAACAGGGGCCTTCTCAACAATGGGGAAACTTCTACTACTTCAGGATGCAGAACATAAGTGACATATATTTCATTGGTGGCTTTGGCACTGTTGCTTGGGTTGACGTCAAAGAATACGAGGCCCTGCAGCCTGATAGGATTGCAGTTAATGGAGGGGAACAGAACCTGAAGGAACTGAATGCAATGTTTTCAAAGCCCCTAAAAGAGCTTTTATCTGCCGAGTCTGAGGTGGATGATGCTGCTCTCATATCCATAGACAGCAAAGGAACTGATATTCGGGTCCGCCAAGGTGCACAGTTCAACATACAGAGGATATCATTTGACGAAGGCCATTCTGTCGAGACACTTGAGGAAGCGAAGGTTGCTCTCCGAAAGCTGATAAACAAAGGCCGAGTATTTAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyrid_oxidase_2

Protein Analysis

385

Amino Acids

42.09

Weight (kDa)

6.5

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CREG_beta-barrel	PF13883	145 - 289	9.1e-19	CREG, beta-barrel
PNPOx_N	PF01243	146 - 255	2.6e-06	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51560 AT3G21140
fragaria_vesca	FvH4_6g37120 FvH4_6g37120 FvH4_6g37120
malus_domestica	MD09G1161400.v1.1 MD17G1147200.v1.1
prunus_persica	Prupe.3G020500_v2.0.a1
pyrus_communis	pycom09g07990 pycom17g13990
rosa_chinensis	RchiOBHm_Chr2g0149681
rosa_laevigata	RLG00000020437
rosa_multiflora	Rmu_co8401521.1_g000001 Rmu_sc0013937.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097800
rosa_rugosa	Rorug02G0414400 Rorug02G0414500 Rorug02G0414600
rosa_samantha	Rh2AG474600 Rh2BG486300 Rh2CG460300 Rh2DG495600
rosa_wichuraiana	Rw2G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	855
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	4 cut(s)	381, 423, 651, 1030
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	4 cut(s)	240, 384, 772, 935
AcyI	GRCGYC	1 cut(s)	852
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	66, 263, 939, 1048
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	8 cut(s)	18, 143, 184, 353, 431, 608, 955, 1123
AluI	AGCT	8 cut(s)	18, 143, 184, 353, 431, 608, 955, 1123
Alw21I	GWGCWC	3 cut(s)	145, 476, 1042
Alw26I	GTCTC	3 cut(s)	312, 489, 1082
Alw44I	GTGCAC	2 cut(s)	472, 1038
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	913
AoxI	GGCC	7 cut(s)	156, 453, 582, 755, 867, 1075, 1135
ApaLI	GTGCAC	2 cut(s)	472, 1038
ApeKI	GCWGC	2 cut(s)	874, 986
ApoI	RAATTY	1 cut(s)	598
AseI	ATTAAT	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	755, 868, 1027
AsuC2I	CCSGG	2 cut(s)	32, 151
AsuHPI	GGTGA	2 cut(s)	257, 695
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	2 cut(s)	476, 1042
BalI	TGGCCA	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	145, 724
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	3 cut(s)	145, 476, 1042
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	886, 973
BccI	CCATC	2 cut(s)	593, 639
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	642
BcnI	CCSGG	2 cut(s)	32, 151
BcoDI	GTCTC	3 cut(s)	312, 489, 1082
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	872
BisI	GCNGC	3 cut(s)	652, 875, 987
BlsI	GCNGC	3 cut(s)	653, 876, 988
Bme1390I	CCNGG	3 cut(s)	32, 151, 642
Bme18I	GGWCC	1 cut(s)	1027
BmgT120I	GGNCC	3 cut(s)	755, 868, 1027
BmiI	GGNNCC	3 cut(s)	166, 756, 1028
BmrFI	CCNGG	3 cut(s)	32, 151, 642
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	6 cut(s)	565, 608, 715, 754, 783, 973
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bpu10I	CCTNAGC	2 cut(s)	185, 427
BpuEI	CTTGAG	1 cut(s)	1115
BpuMI	CCSGG	2 cut(s)	32, 151
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	150, 1033
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	2 cut(s)	150, 1033
BseGI	GGATG	7 cut(s)	289, 314, 556, 585, 650, 798, 985
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	3 cut(s)	176, 254, 963
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	476, 1042
BseXI	GCAGC	2 cut(s)	886, 973
BsgI	GTGCAG	2 cut(s)	407, 653
BshFI	GGCC	7 cut(s)	158, 455, 584, 757, 869, 1077, 1137
BsiHKAI	GWGCWC	3 cut(s)	145, 476, 1042
BsiSI	CCGG	4 cut(s)	32, 150, 168, 499
BslFI	GGGAC	2 cut(s)	14, 405
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	3 cut(s)	312, 489, 1082
BsmFI	GGGAC	2 cut(s)	14, 405
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	7 cut(s)	158, 455, 584, 757, 869, 1077, 1137
Bsp1286I	GDGCHC	4 cut(s)	145, 476, 724, 1042
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	4 cut(s)	381, 423, 651, 1030
BspANI	GGCC	7 cut(s)	158, 455, 584, 757, 869, 1077, 1137
BspCNI	CTCAG	3 cut(s)	177, 253, 964
BspLI	GGNNCC	3 cut(s)	166, 756, 1028
BspMAI	CTGCAG	1 cut(s)	876
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	150, 1033
BssMI	GATC	1 cut(s)	610
BssNI	GRCGYC	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	1033
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	478, 838, 1044
Bst6I	CTCTTC	2 cut(s)	174, 325
BstACI	GRCGYC	1 cut(s)	852
BstC8I	GCNNGC	3 cut(s)	212, 453, 491
BstDEI	CTNAG	4 cut(s)	185, 240, 427, 972
BstEII	GGTNACC	1 cut(s)	670
BstF5I	GGATG	7 cut(s)	289, 314, 556, 585, 650, 798, 985
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	3 cut(s)	312, 489, 1082
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 461, 499, 1109
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	670
BstSCI	CCNGG	3 cut(s)	30, 149, 640
BstSFI	CTRYAG	1 cut(s)	872
BstSLI	GKGCMC	2 cut(s)	476, 1042
BstV1I	GCAGC	2 cut(s)	886, 973
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	7 cut(s)	158, 455, 584, 757, 869, 1077, 1137
BtsCI	GGATG	7 cut(s)	289, 314, 556, 585, 650, 798, 985
BtsIMutI	CAGTG	1 cut(s)	834
Cac8I	GCNNGC	3 cut(s)	212, 453, 491
CaiI	CAGNNNCTG	1 cut(s)	913
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	755, 868, 1027
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	2 cut(s)	407, 490
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	185, 240, 427, 972
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	174, 325
EarI	CTCTTC	2 cut(s)	174, 325
EciI	GGCGGA	1 cut(s)	1019
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	1033
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	145, 724
Eco32I	GATATC	2 cut(s)	512, 1062
Eco47I	GGWCC	1 cut(s)	1027
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	4 cut(s)	240, 384, 772, 935
Eco91I	GGTNACC	1 cut(s)	670
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	755, 868
EcoO65I	GGTNACC	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	2 cut(s)	512, 1062
EcoT14I	CCWWGG	1 cut(s)	1033
EcoT38I	GRGCYC	2 cut(s)	145, 724
ErhI	CCWWGG	1 cut(s)	1033
FaeI	CATG	2 cut(s)	410, 493
FaqI	GGGAC	2 cut(s)	14, 405
FatI	CATG	2 cut(s)	406, 489
FauI	CCCGC	2 cut(s)	374, 430
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	3 cut(s)	652, 875, 987
FokI	GGATG	7 cut(s)	296, 301, 543, 572, 657, 805, 992
FriOI	GRGCYC	2 cut(s)	145, 724
Fsp4HI	GCNGC	3 cut(s)	652, 875, 987
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	652, 875, 987
HaeIII	GGCC	7 cut(s)	158, 455, 584, 757, 869, 1077, 1137
HapII	CCGG	4 cut(s)	32, 150, 168, 499
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	852
Hin1II	CATG	2 cut(s)	410, 493
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	6 cut(s)	130, 190, 357, 545, 637, 968
HpaII	CCGG	4 cut(s)	32, 150, 168, 499
HphI	GGTGA	2 cut(s)	257, 695
Hpy166II	GTNNAC	5 cut(s)	413, 474, 691, 850, 1040
Hpy188I	TCNGA	5 cut(s)	99, 195, 220, 973, 1118
Hpy188III	TCNNGA	3 cut(s)	701, 790, 1087
Hpy8I	GTNNAC	5 cut(s)	413, 474, 691, 850, 1040
HpyAV	CCTTC	6 cut(s)	34, 257, 768, 910, 1067, 1099
HpyCH4III	ACNGT	3 cut(s)	478, 838, 1044
HpyCH4IV	ACGT	1 cut(s)	852
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 461, 499, 1109
HpyF3I	CTNAG	4 cut(s)	185, 240, 427, 972
HpySE526I	ACGT	1 cut(s)	852
Hsp92I	GRCGYC	1 cut(s)	852
Hsp92II	CATG	2 cut(s)	410, 493
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	610
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	4 cut(s)	170, 332, 448, 648
Lsp1109I	GCAGC	2 cut(s)	886, 973
LweI	GCATC	6 cut(s)	565, 608, 715, 754, 783, 973
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	2 cut(s)	670, 806
MalI	GATC	1 cut(s)	612
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	1 cut(s)	610
MboII	GAAGA	4 cut(s)	191, 233, 286, 312
MhlI	GDGCHC	4 cut(s)	145, 476, 724, 1042
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	2 cut(s)	372, 598
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	2 cut(s)	351, 977
Mox20I	TGGCCA	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	4 cut(s)	251, 293, 894, 1146
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	4 cut(s)	32, 150, 168, 499
MspR9I	CCNGG	3 cut(s)	32, 151, 642
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	4 cut(s)	332, 461, 499, 1109
NciI	CCSGG	2 cut(s)	32, 151
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	410, 493
NlaIV	GGNNCC	3 cut(s)	166, 756, 1028
NmeAIII	GCCGAG	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	806
NspI	RCATGY	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	4 cut(s)	130, 190, 545, 637
PflMI	CCANNNNNTGG	1 cut(s)	377
PfoI	TCCNGGA	2 cut(s)	30, 640
PkrI	GCNGC	3 cut(s)	653, 876, 988
PleI	GAGTC	2 cut(s)	351, 976
PpsI	GAGTC	2 cut(s)	351, 976
PshBI	ATTAAT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	166, 756, 1028
PspPI	GGNCC	3 cut(s)	755, 868, 1027
PstI	CTGCAG	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	913
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	251, 293, 894, 1146
SatI	GCNGC	3 cut(s)	652, 875, 987
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	3 cut(s)	755, 868, 1027
SchI	GAGTC	2 cut(s)	351, 977
ScrFI	CCNGG	3 cut(s)	32, 151, 642
SduI	GDGCHC	4 cut(s)	145, 476, 724, 1042
SfaNI	GCATC	6 cut(s)	565, 608, 715, 754, 783, 973
SfcI	CTRYAG	1 cut(s)	872
SgrAI	CRCCGGYG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	1027
SmiI	ATTTAAAT	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	2 cut(s)	372, 598
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	4 cut(s)	381, 423, 651, 1030
SspMI	CTAG	1 cut(s)	527
SstI	GAGCTC	1 cut(s)	145
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	30, 149, 640
StyI	CCWWGG	1 cut(s)	1033
SwaI	ATTTAAAT	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	478, 838, 1044
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	3 cut(s)	85, 139, 1086
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	372, 598
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	4 cut(s)	130, 190, 545, 637
Tru1I	TTAA	4 cut(s)	251, 293, 894, 1146
Tru9I	TTAA	4 cut(s)	251, 293, 894, 1146
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	2 cut(s)	874, 986
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	4 cut(s)	300, 395, 537, 808
TspRI	CASTG	1 cut(s)	841
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	2 cut(s)	472, 1038
VpaK11BI	GGWCC	1 cut(s)	1027
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	527
ZraI	GACGTC	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.