Prupe.3G020500_v2.0.a1

Pyridoxamine 5'-phosphate oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0008585
Physical Location & Seq
Forward (+)
1495847 .. 1500609
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G020500.1

Sequence Viewer

Length: 1155 bp
ATGGAAGCCCTTGCAAGCTCTGCGTTCGTCCCGGAGACGCACCCAGTTCTTCATAACCCTACTTCAATCAGAACTCCAAATAAGCGAAGTGGGTTTCTCAAAATCAGTCAAAGTTCTCATTTTGTTGGGCTGCGAGTTCAAGCTCTCGCAGGGGAGGCTTCTGGGTCCAGTGACAGTGAAGAGGTCAGGCCCTTGAATAATGGGTTTGGTTTAGTTTCTGAAGAGATTCTCTCTTTGTCTCAGGGTAATTTAAATCAGTCTGATAGTAGTGAGAAGAATGTGAGTGAGGCATTAAATTTAGACATGTCTTTTTCATCCCCATCTGCAAATGGAGCAGCAGGGGGAACGAGAGCTGGGCTCTTTAGAACCCCAATTTCTGGCGGGGTGCAGAGTGCAACTTCAGCTCATGGGTTACCTCGACCCGCCTTAGCTGTACGCAATCTTATGGAGCAGGCTAGATTTGCTCATTTGTGCACCGTAATGTCGCGCATGCACCATCGACGAGAAGGATATCCATTTGGTTCTCTGGTTGATTTTGCACCTGATTCTACTGGGCATCCTATATTTTCGTTTTCACCATTGGCCATCCACACACGGAATCTGTTAGCTGATCCAAGATGCACACTTGTTGTGCAGATTCCTGGATGGAGTGGCTTGTCAAATGCAAGGGTAACCATTTTTGGTGATGTCTACCCACTTCCAGAGCATCAACAGGAATGGGCTCATAAACAATACATAGCAAAACATCAACAGGGGCCTTCTCAACAATGGGGAAACTTCTACTACTTCAGGATGCAGAACATAAGTGACATATATTTCATTGGTGGATTTGGCACTGTTGCTTGGGTTGACGTCAAAGAATACGAGGCCCTTCAGCCTGATAAGATTGCAGTTGACGGAGGGGAGCAGAACCTGAAGGAACTTAATGCAATCTTTTCGAAGCCCCTGAAAGAGCTTTTGTCTGCTGAATCTGAGGTCGATGATGCTGCTCTCATATCCATAGACAGCAAAGGAACTGATGTTCGGGTCCGTCAGGGTGCACAGTTCAACATACAGAGGATATCATTTGACGAAGGCCATTCTGTCGAGACGTTAGAGGAAGCCAAGGCTGCTCTTAGGAAACTTATAAACAAAGGCCGAGTATTTAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyrid_oxidase_2

Protein Analysis

385

Amino Acids

41.99

Weight (kDa)

6.36

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1127, 1153
AatII GACGTC 1 cut(s) 855
AccB7I CCANNNNNTGG 1 cut(s) 377
AccI GTMKAC 1 cut(s) 690
AccII CGCG 1 cut(s) 487
AciI CCGC 2 cut(s) 381, 423
AclWI GGATC 1 cut(s) 605
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 5 cut(s) 240, 384, 772, 857, 935
AcyI GRCGYC 1 cut(s) 852
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 66, 140, 196, 1048
AjnI CCWGG 1 cut(s) 640
AloI GAACNNNNNNTCC 2 cut(s) 1005, 1037
AluBI AGCT 7 cut(s) 18, 143, 353, 404, 431, 608, 955
AluI AGCT 7 cut(s) 18, 143, 353, 404, 431, 608, 955
Alw21I GWGCWC 2 cut(s) 476, 1042
Alw26I GTCTC 3 cut(s) 29, 243, 1082
Alw44I GTGCAC 2 cut(s) 472, 1038
AlwI GGATC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 6 cut(s) 188, 582, 755, 867, 1075, 1135
ApaLI GTGCAC 2 cut(s) 472, 1038
ApeKI GCWGC 4 cut(s) 130, 335, 986, 1109
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 5 cut(s) 165, 189, 755, 868, 1027
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 567, 695
AsuII TTCGAA 1 cut(s) 938
AvaII GGWCC 2 cut(s) 165, 1027
BaeGI GKGCMC 2 cut(s) 476, 1042
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 2 cut(s) 360, 724
Bbv12I GWGCWC 2 cut(s) 476, 1042
BbvI GCAGC 4 cut(s) 117, 347, 973, 1096
BccI CCATC 4 cut(s) 328, 504, 593, 639
BcgI CGANNNNNNTGC 4 cut(s) 918, 952, 968, 1002
BciT130I CCWGG 1 cut(s) 642
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 29, 243, 1082
BfaI CTAG 1 cut(s) 456
BisI GCNGC 4 cut(s) 131, 336, 987, 1110
BlsI GCNGC 4 cut(s) 132, 337, 988, 1111
Bme1390I CCNGG 2 cut(s) 32, 642
Bme18I GGWCC 2 cut(s) 165, 1027
BmgT120I GGNCC 5 cut(s) 165, 189, 755, 868, 1027
BmiI GGNNCC 3 cut(s) 166, 756, 1028
BmrFI CCNGG 2 cut(s) 32, 642
BmrI ACTGGG 2 cut(s) 38, 561
BmsI GCATC 5 cut(s) 565, 608, 715, 783, 973
BmuI ACTGGG 2 cut(s) 38, 561
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 342, 374
Bpu10I CCTNAGC 1 cut(s) 427
Bpu14I TTCGAA 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 852
BsaJI CCNNGG 1 cut(s) 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 44, 168, 556
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 1104
BseGI GGATG 5 cut(s) 314, 556, 585, 650, 798
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 254, 963
BseNI ACTGG 3 cut(s) 44, 168, 556
BseSI GKGCMC 2 cut(s) 476, 1042
BseXI GCAGC 4 cut(s) 117, 347, 973, 1096
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 2 cut(s) 407, 653
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 6 cut(s) 190, 584, 757, 869, 1077, 1137
BsiHKAI GWGCWC 2 cut(s) 476, 1042
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 3 cut(s) 29, 243, 1082
BsmBI CGTCTC 2 cut(s) 29, 1082
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 6 cut(s) 190, 584, 757, 869, 1077, 1137
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 4 cut(s) 360, 476, 724, 1042
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 2 cut(s) 381, 423
BspANI GGCC 6 cut(s) 190, 584, 757, 869, 1077, 1137
BspCNI CTCAG 2 cut(s) 253, 964
BspFNI CGCG 1 cut(s) 487
BspLI GGNNCC 3 cut(s) 166, 756, 1028
BspPI GGATC 1 cut(s) 605
BspT104I TTCGAA 1 cut(s) 938
BsrI ACTGG 3 cut(s) 44, 168, 556
BssECI CCNNGG 1 cut(s) 1104
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 852
BssT1I CCWWGG 1 cut(s) 1104
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 4 cut(s) 176, 478, 838, 1044
Bst6I CTCTTC 2 cut(s) 174, 216
BstACI GRCGYC 1 cut(s) 852
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 3 cut(s) 16, 453, 491
BstDEI CTNAG 4 cut(s) 240, 427, 972, 1115
BstEII GGTNACC 2 cut(s) 411, 670
BstF5I GGATG 5 cut(s) 314, 556, 585, 650, 798
BstFNI CGCG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 3 cut(s) 29, 243, 1082
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 6 cut(s) 20, 155, 332, 401, 461, 1109
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 2 cut(s) 307, 493
BstPI GGTNACC 2 cut(s) 411, 670
BstSCI CCNGG 2 cut(s) 30, 640
BstSLI GKGCMC 2 cut(s) 476, 1042
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 4 cut(s) 117, 347, 973, 1096
BsuRI GGCC 6 cut(s) 190, 584, 757, 869, 1077, 1137
BtsCI GGATG 5 cut(s) 314, 556, 585, 650, 798
BtsIMutI CAGTG 3 cut(s) 175, 181, 834
Cac8I GCNNGC 3 cut(s) 16, 453, 491
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 5 cut(s) 165, 189, 755, 868, 1027
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 304, 407, 490
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 4 cut(s) 240, 427, 972, 1115
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
DraI TTTAAA 2 cut(s) 252, 1147
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 174, 216
EarI CTCTTC 2 cut(s) 174, 216
Eco130I CCWWGG 1 cut(s) 1104
Eco24I GRGCYC 2 cut(s) 360, 724
Eco32I GATATC 2 cut(s) 512, 1062
Eco47I GGWCC 2 cut(s) 165, 1027
Eco57I CTGAAG 5 cut(s) 240, 384, 772, 857, 935
Eco91I GGTNACC 2 cut(s) 411, 670
EcoO109I RGGNCCY 3 cut(s) 189, 755, 868
EcoO65I GGTNACC 2 cut(s) 411, 670
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 2 cut(s) 512, 1062
EcoT14I CCWWGG 1 cut(s) 1104
EcoT38I GRGCYC 2 cut(s) 360, 724
ErhI CCWWGG 1 cut(s) 1104
Esp3I CGTCTC 2 cut(s) 29, 1082
FaeI CATG 3 cut(s) 307, 410, 493
FaqI GGGAC 1 cut(s) 14
FatI CATG 3 cut(s) 303, 406, 489
FauI CCCGC 2 cut(s) 374, 430
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 131, 336, 987, 1110
FokI GGATG 5 cut(s) 301, 543, 572, 657, 805
FriOI GRGCYC 2 cut(s) 360, 724
Fsp4HI GCNGC 4 cut(s) 131, 336, 987, 1110
FspBI CTAG 1 cut(s) 456
GlaI GCGC 1 cut(s) 488
GluI GCNGC 4 cut(s) 131, 336, 987, 1110
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 6 cut(s) 190, 584, 757, 869, 1077, 1137
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 3 cut(s) 307, 410, 493
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 2 cut(s) 850, 895
HindII GTYRAC 2 cut(s) 850, 895
HinfI GANTC 5 cut(s) 226, 545, 598, 637, 968
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 567, 695
Hpy166II GTNNAC 5 cut(s) 474, 691, 850, 895, 1040
Hpy188I TCNGA 4 cut(s) 71, 220, 262, 973
Hpy188III TCNNGA 3 cut(s) 701, 790, 1087
Hpy8I GTNNAC 5 cut(s) 474, 691, 850, 895, 1040
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 5 cut(s) 500, 768, 881, 910, 1067
HpyCH4III ACNGT 4 cut(s) 176, 478, 838, 1044
HpyCH4IV ACGT 2 cut(s) 852, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 155, 332, 401, 461, 1109
HpyF3I CTNAG 4 cut(s) 240, 427, 972, 1115
HpySE526I ACGT 2 cut(s) 852, 1091
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 3 cut(s) 307, 410, 493
HspAI GCGC 1 cut(s) 487
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 3 cut(s) 332, 448, 904
Lsp1109I GCAGC 4 cut(s) 117, 347, 973, 1096
LweI GCATC 5 cut(s) 565, 608, 715, 783, 973
MaeI CTAG 1 cut(s) 456
MaeII ACGT 2 cut(s) 852, 1091
MaeIII GTNAC 4 cut(s) 170, 411, 670, 806
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 4 cut(s) 41, 191, 233, 286
MhlI GDGCHC 4 cut(s) 360, 476, 724, 1042
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 4 cut(s) 247, 295, 372, 1148
MluNI TGGCCA 1 cut(s) 584
MnlI CCTC 9 cut(s) 148, 175, 280, 426, 859, 893, 967, 1050, 1090
Mox20I TGGCCA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 584
MseI TTAA 4 cut(s) 251, 293, 924, 1146
MslI CAYNNNNRTG 1 cut(s) 479
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 32, 642
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 6 cut(s) 20, 155, 332, 401, 461, 1109
NciI CCSGG 1 cut(s) 32
NdeII GATC 1 cut(s) 610
NlaIII CATG 3 cut(s) 307, 410, 493
NlaIV GGNNCC 3 cut(s) 166, 756, 1028
NmuCI GTSAC 2 cut(s) 170, 806
NspI RCATGY 2 cut(s) 307, 493
NspV TTCGAA 1 cut(s) 938
PaeI GCATGC 1 cut(s) 493
PciI ACATGT 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 5 cut(s) 226, 545, 598, 637, 968
PflMI CCANNNNNTGG 1 cut(s) 377
PfoI TCCNGGA 2 cut(s) 30, 640
PkrI GCNGC 4 cut(s) 132, 337, 988, 1111
PscI ACATGT 1 cut(s) 303
PsiI TTATAA 2 cut(s) 1127, 1153
Psp6I CCWGG 1 cut(s) 640
PspEI GGTNACC 2 cut(s) 411, 670
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 166, 756, 1028
PspPI GGNCC 5 cut(s) 165, 189, 755, 868, 1027
PstNI CAGNNNCTG 1 cut(s) 913
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 4 cut(s) 251, 293, 924, 1146
SatI GCNGC 4 cut(s) 131, 336, 987, 1110
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 5 cut(s) 165, 189, 755, 868, 1027
ScrFI CCNGG 2 cut(s) 32, 642
SduI GDGCHC 4 cut(s) 360, 476, 724, 1042
SfaNI GCATC 5 cut(s) 565, 608, 715, 783, 973
SfuI TTCGAA 1 cut(s) 938
SinI GGWCC 2 cut(s) 165, 1027
SmiI ATTTAAAT 2 cut(s) 252, 1147
SmiMI CAYNNNNRTG 1 cut(s) 479
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 247, 295, 372, 1148
SsiI CCGC 2 cut(s) 381, 423
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 30, 640
StyI CCWWGG 1 cut(s) 1104
SwaI ATTTAAAT 2 cut(s) 252, 1147
TaaI ACNGT 4 cut(s) 176, 478, 838, 1044
TaiI ACGT 2 cut(s) 855, 1094
TaqI TCGA 5 cut(s) 418, 499, 938, 978, 1086
TasI AATT 4 cut(s) 247, 295, 372, 1148
TfiI GAWTC 5 cut(s) 226, 545, 598, 637, 968
Tru1I TTAA 4 cut(s) 251, 293, 924, 1146
Tru9I TTAA 4 cut(s) 251, 293, 924, 1146
TscAI CASTG 3 cut(s) 175, 181, 841
TseFI GTSAC 2 cut(s) 170, 806
TseI GCWGC 4 cut(s) 130, 335, 986, 1109
Tsp45I GTSAC 2 cut(s) 170, 806
TspDTI ATGAA 3 cut(s) 41, 303, 808
TspGWI ACGGA 3 cut(s) 610, 912, 1019
TspRI CASTG 3 cut(s) 175, 181, 841
Van91I CCANNNNNTGG 1 cut(s) 377
VneI GTGCAC 2 cut(s) 472, 1038
VpaK11BI GGWCC 2 cut(s) 165, 1027
XapI RAATTY 1 cut(s) 295
XceI RCATGY 2 cut(s) 307, 493
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.