4-coumarate--CoA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G51680 AT1G51680 AT1G51680 AT3G21240 AT3G21240 AT3G21240 |
| fragaria_vesca | FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 |
| malus_domestica | MD13G1257800.v1.1 MD17G1229400.v1.1 |
| prunus_persica | Prupe.1G087900_v2.0.a1 Prupe.3G107300_v2.0.a1 |
| pyrus_communis | pycom13g22250 pycom17g23190 |
| rosa_chinensis | RchiOBHm_Chr2g0131501 RchiOBHm_Chr4g0402711 RchiOBHm_Chr5g0057551 |
| rosa_laevigata | RLG00000009052 RLG00000019189 |
| rosa_multiflora | Rmu_co7959539.1_g000001 Rmu_sc0000329.1_g000003 Rmu_sc0002230.1_g000020 Rmu_sc0002451.1_g000001 Rmu_sc0002808.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00112820 Rroxscaffold_5G00347470 |
| rosa_rugosa | Rorug02G0297600 Rorug04G0037900 |
| rosa_samantha | Rh2AG350900 Rh2BG357400 Rh2CG336600 Rh2DG375300 Rh4AG115500 Rh4CG122400 Rh4DG108000 |
| rosa_wichuraiana | Rw2G028470 Rw4G009230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 215, 479 |
| AatII | GACGTC | 4 cut(s) | 69, 213, 276, 747 |
| Acc36I | ACCTGC | 1 cut(s) | 1067 |
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 3 cut(s) | 444, 557, 705 |
| AccII | CGCG | 1 cut(s) | 339 |
| AclWI | GGATC | 2 cut(s) | 865, 1175 |
| AcoI | YGGCCR | 2 cut(s) | 187, 921 |
| AcsI | RAATTY | 2 cut(s) | 149, 305 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AcvI | CACGTG | 1 cut(s) | 193 |
| AcyI | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| AfaI | GTAC | 2 cut(s) | 197, 1147 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1190 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 4 cut(s) | 464, 787, 1013, 1372 |
| AhlI | ACTAGT | 1 cut(s) | 679 |
| AjiI | CACGTC | 2 cut(s) | 217, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 965 |
| Alw26I | GTCTC | 2 cut(s) | 935, 1280 |
| AlwI | GGATC | 2 cut(s) | 865, 1175 |
| AoxI | GGCC | 2 cut(s) | 187, 921 |
| ApeKI | GCWGC | 4 cut(s) | 528, 989, 1274, 1484 |
| ApoI | RAATTY | 2 cut(s) | 149, 305 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1119, 1556, 1617 |
| AspLEI | GCGC | 2 cut(s) | 7, 344 |
| AspS9I | GGNCC | 2 cut(s) | 179, 1079 |
| AsuC2I | CCSGG | 1 cut(s) | 1218 |
| AsuHPI | GGTGA | 9 cut(s) | 43, 418, 532, 591, 988, 1232, 1232, 1502, 1525 |
| AsuNHI | GCTAGC | 1 cut(s) | 1087 |
| AvaII | GGWCC | 2 cut(s) | 179, 1079 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1137, 1170 |
| BalI | TGGCCA | 1 cut(s) | 923 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 965 |
| BauI | CACGAG | 1 cut(s) | 685 |
| BbrPI | CACGTG | 1 cut(s) | 193 |
| BbsI | GAAGAC | 1 cut(s) | 927 |
| Bbv12I | GWGCWC | 1 cut(s) | 965 |
| BbvI | GCAGC | 4 cut(s) | 515, 976, 1286, 1496 |
| BccI | CCATC | 3 cut(s) | 28, 895, 1639 |
| BceAI | ACGGC | 2 cut(s) | 724, 1004 |
| BciVI | GTATCC | 1 cut(s) | 1052 |
| BcnI | CCSGG | 1 cut(s) | 1218 |
| BcoDI | GTCTC | 2 cut(s) | 935, 1280 |
| BcuI | ACTAGT | 1 cut(s) | 679 |
| BfaI | CTAG | 4 cut(s) | 680, 1088, 1418, 1670 |
| BfmI | CTRYAG | 1 cut(s) | 1278 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfuAI | ACCTGC | 1 cut(s) | 1067 |
| BfuI | GTATCC | 1 cut(s) | 1052 |
| BglII | AGATCT | 1 cut(s) | 1654 |
| BisI | GCNGC | 9 cut(s) | 237, 327, 340, 357, 529, 822, 990, 1275, 1485 |
| BlpI | GCTNAGC | 2 cut(s) | 696, 1413 |
| BlsI | GCNGC | 9 cut(s) | 238, 328, 341, 358, 530, 823, 991, 1276, 1486 |
| Bme1390I | CCNGG | 1 cut(s) | 1218 |
| Bme18I | GGWCC | 2 cut(s) | 179, 1079 |
| BmgBI | CACGTC | 2 cut(s) | 217, 610 |
| BmgT120I | GGNCC | 2 cut(s) | 179, 1079 |
| BmiI | GGNNCC | 4 cut(s) | 6, 897, 906, 1116 |
| BmrFI | CCNGG | 1 cut(s) | 1218 |
| BmsI | GCATC | 4 cut(s) | 501, 578, 651, 1006 |
| BmtI | GCTAGC | 1 cut(s) | 1091 |
| BpiI | GAAGAC | 1 cut(s) | 927 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 679, 711 |
| BpmI | CTGGAG | 1 cut(s) | 1338 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 696, 1413 |
| BpuMI | CCSGG | 1 cut(s) | 1218 |
| Bsa29I | ATCGAT | 2 cut(s) | 1335, 1366 |
| BsaAI | YACGTR | 1 cut(s) | 193 |
| BsaHI | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| BsaI | GGTCTC | 1 cut(s) | 1280 |
| BsaJI | CCNNGG | 2 cut(s) | 337, 564 |
| BsaWI | WCCGGW | 4 cut(s) | 88, 601, 1123, 1190 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 188, 206, 218, 236, 880, 910 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1190 |
| Bse118I | RCCGGY | 1 cut(s) | 185 |
| Bse1I | ACTGG | 2 cut(s) | 1082, 1321 |
| Bse3DI | GCAATG | 3 cut(s) | 924, 1098, 1476 |
| BseCI | ATCGAT | 2 cut(s) | 1335, 1366 |
| BseDI | CCNNGG | 2 cut(s) | 337, 564 |
| BseGI | GGATG | 2 cut(s) | 99, 1438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1190 |
| BseMI | GCAATG | 3 cut(s) | 924, 1098, 1476 |
| BseMII | CTCAG | 6 cut(s) | 41, 566, 710, 1155, 1404, 1649 |
| BseNI | ACTGG | 2 cut(s) | 1082, 1321 |
| BseRI | GAGGAG | 4 cut(s) | 275, 278, 619, 984 |
| BseXI | GCAGC | 4 cut(s) | 515, 976, 1286, 1496 |
| Bsh1236I | CGCG | 1 cut(s) | 339 |
| BshFI | GGCC | 2 cut(s) | 189, 923 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshVI | ATCGAT | 2 cut(s) | 1335, 1366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 965 |
| BsiSI | CCGG | 9 cut(s) | 89, 186, 377, 602, 1124, 1191, 1218, 1271, 1409 |
| BslFI | GGGAC | 2 cut(s) | 285, 690 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1190 |
| BsmAI | GTCTC | 2 cut(s) | 935, 1280 |
| BsmBI | CGTCTC | 1 cut(s) | 935 |
| BsmFI | GGGAC | 2 cut(s) | 285, 690 |
| BsnI | GGCC | 2 cut(s) | 189, 923 |
| Bso31I | GGTCTC | 1 cut(s) | 1280 |
| Bsp1286I | GDGCHC | 1 cut(s) | 965 |
| Bsp1407I | TGTACA | 1 cut(s) | 195 |
| Bsp143I | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 696, 1413 |
| BspANI | GGCC | 2 cut(s) | 189, 923 |
| BspCNI | CTCAG | 6 cut(s) | 40, 565, 709, 1156, 1405, 1650 |
| BspDI | ATCGAT | 2 cut(s) | 1335, 1366 |
| BspFNI | CGCG | 1 cut(s) | 339 |
| BspHI | TCATGA | 1 cut(s) | 1248 |
| BspLI | GGNNCC | 4 cut(s) | 6, 897, 906, 1116 |
| BspMI | ACCTGC | 1 cut(s) | 1067 |
| BspOI | GCTAGC | 1 cut(s) | 1091 |
| BspPI | GGATC | 2 cut(s) | 865, 1175 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTNI | GGTCTC | 1 cut(s) | 1280 |
| BsrDI | GCAATG | 3 cut(s) | 924, 1098, 1476 |
| BsrFI | RCCGGY | 1 cut(s) | 185 |
| BsrGI | TGTACA | 1 cut(s) | 195 |
| BsrI | ACTGG | 2 cut(s) | 1082, 1321 |
| BssAI | RCCGGY | 1 cut(s) | 185 |
| BssECI | CCNNGG | 2 cut(s) | 337, 564 |
| BssMI | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| BssNI | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| BssSI | CACGAG | 1 cut(s) | 685 |
| Bst2BI | CACGAG | 1 cut(s) | 685 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 299, 892, 1150, 1304 |
| BstACI | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| BstAUI | TGTACA | 1 cut(s) | 195 |
| BstBAI | YACGTR | 1 cut(s) | 193 |
| BstC8I | GCNNGC | 1 cut(s) | 1089 |
| BstDEI | CTNAG | 8 cut(s) | 27, 159, 552, 696, 809, 1164, 1413, 1658 |
| BstDSI | CCRYGG | 1 cut(s) | 337 |
| BstEII | GGTNACC | 2 cut(s) | 1238, 1256 |
| BstF5I | GGATG | 2 cut(s) | 99, 1438 |
| BstFNI | CGCG | 1 cut(s) | 339 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 2 cut(s) | 7, 344 |
| BstKTI | GATC | 9 cut(s) | 80, 795, 852, 873, 1183, 1248, 1335, 1366, 1657 |
| BstMAI | GTCTC | 2 cut(s) | 935, 1280 |
| BstMBI | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 356, 386, 395, 534, 865, 1025, 1280, 1466, 1670 |
| BstPI | GGTNACC | 2 cut(s) | 1238, 1256 |
| BstSCI | CCNGG | 1 cut(s) | 1216 |
| BstSFI | CTRYAG | 1 cut(s) | 1278 |
| BstUI | CGCG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 4 cut(s) | 515, 976, 1286, 1496 |
| BstV2I | GAAGAC | 1 cut(s) | 927 |
| BstX2I | RGATCY | 1 cut(s) | 1654 |
| BstYI | RGATCY | 1 cut(s) | 1654 |
| Bsu15I | ATCGAT | 2 cut(s) | 1335, 1366 |
| BsuI | GTATCC | 1 cut(s) | 1052 |
| BsuRI | GGCC | 2 cut(s) | 189, 923 |
| BsuTUI | ATCGAT | 2 cut(s) | 1335, 1366 |
| BtgI | CCRYGG | 1 cut(s) | 337 |
| BtgZI | GCGATG | 1 cut(s) | 753 |
| BtrI | CACGTC | 2 cut(s) | 217, 610 |
| BtsCI | GGATG | 2 cut(s) | 99, 1438 |
| BtsIMutI | CAGTG | 3 cut(s) | 67, 1089, 1608 |
| BveI | ACCTGC | 1 cut(s) | 1067 |
| Cac8I | GCNNGC | 1 cut(s) | 1089 |
| CciI | TCATGA | 1 cut(s) | 1248 |
| CfoI | GCGC | 2 cut(s) | 7, 344 |
| Cfr10I | RCCGGY | 1 cut(s) | 185 |
| Cfr13I | GGNCC | 2 cut(s) | 179, 1079 |
| Cfr42I | CCGCGG | 1 cut(s) | 340 |
| ClaI | ATCGAT | 2 cut(s) | 1335, 1366 |
| Csp6I | GTAC | 2 cut(s) | 196, 1146 |
| CviAII | CATG | 4 cut(s) | 280, 766, 796, 1249 |
| CviQI | GTAC | 2 cut(s) | 196, 1146 |
| DdeI | CTNAG | 8 cut(s) | 27, 159, 552, 696, 809, 1164, 1413, 1658 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 9 cut(s) | 79, 794, 851, 872, 1182, 1247, 1334, 1365, 1656 |
| DpnII | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 215, 479 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 215, 479 |
| EaeI | YGGCCR | 2 cut(s) | 187, 921 |
| EciI | GGCGGA | 2 cut(s) | 395, 897 |
| Ecl136II | GAGCTC | 1 cut(s) | 963 |
| Eco24I | GRGCYC | 1 cut(s) | 965 |
| Eco31I | GGTCTC | 1 cut(s) | 1280 |
| Eco47I | GGWCC | 2 cut(s) | 179, 1079 |
| Eco53kI | GAGCTC | 1 cut(s) | 963 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| Eco72I | CACGTG | 1 cut(s) | 193 |
| Eco91I | GGTNACC | 2 cut(s) | 1238, 1256 |
| EcoICRI | GAGCTC | 1 cut(s) | 963 |
| EcoO65I | GGTNACC | 2 cut(s) | 1238, 1256 |
| EcoRI | GAATTC | 2 cut(s) | 149, 305 |
| EcoT38I | GRGCYC | 1 cut(s) | 965 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 935 |
| FaeI | CATG | 4 cut(s) | 283, 769, 799, 1252 |
| FaqI | GGGAC | 2 cut(s) | 285, 690 |
| FatI | CATG | 4 cut(s) | 279, 765, 795, 1248 |
| FauI | CCCGC | 1 cut(s) | 233 |
| FblI | GTMKAC | 3 cut(s) | 444, 557, 705 |
| Fnu4HI | GCNGC | 9 cut(s) | 237, 327, 340, 357, 529, 822, 990, 1275, 1485 |
| FokI | GGATG | 2 cut(s) | 86, 1425 |
| FriOI | GRGCYC | 1 cut(s) | 965 |
| Fsp4HI | GCNGC | 9 cut(s) | 237, 327, 340, 357, 529, 822, 990, 1275, 1485 |
| FspBI | CTAG | 4 cut(s) | 680, 1088, 1418, 1670 |
| GlaI | GCGC | 2 cut(s) | 6, 343 |
| GluI | GCNGC | 9 cut(s) | 237, 327, 340, 357, 529, 822, 990, 1275, 1485 |
| GsuI | CTGGAG | 1 cut(s) | 1338 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 189, 923 |
| HapII | CCGG | 9 cut(s) | 89, 186, 377, 602, 1124, 1191, 1218, 1271, 1409 |
| HhaI | GCGC | 2 cut(s) | 7, 344 |
| Hin1I | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| Hin1II | CATG | 4 cut(s) | 283, 769, 799, 1252 |
| Hin6I | GCGC | 2 cut(s) | 5, 342 |
| HinP1I | GCGC | 2 cut(s) | 5, 342 |
| HincII | GTYRAC | 5 cut(s) | 262, 445, 549, 558, 706 |
| HindII | GTYRAC | 5 cut(s) | 262, 445, 549, 558, 706 |
| HpaI | GTTAAC | 1 cut(s) | 262 |
| HpaII | CCGG | 9 cut(s) | 89, 186, 377, 602, 1124, 1191, 1218, 1271, 1409 |
| HphI | GGTGA | 9 cut(s) | 43, 418, 532, 591, 988, 1232, 1232, 1502, 1525 |
| Hpy166II | GTNNAC | 8 cut(s) | 196, 198, 214, 262, 445, 549, 558, 706 |
| Hpy188III | TCNNGA | 8 cut(s) | 103, 302, 685, 874, 1134, 1184, 1249, 1442 |
| Hpy8I | GTNNAC | 8 cut(s) | 196, 198, 214, 262, 445, 549, 558, 706 |
| HpyAV | CCTTC | 3 cut(s) | 343, 518, 1516 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 299, 892, 1150, 1304 |
| HpyCH4IV | ACGT | 8 cut(s) | 66, 192, 210, 216, 273, 441, 609, 744 |
| HpyCH4V | TGCA | 3 cut(s) | 492, 1109, 1505 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 356, 386, 395, 534, 865, 1025, 1280, 1466, 1670 |
| HpyF3I | CTNAG | 8 cut(s) | 27, 159, 552, 696, 809, 1164, 1413, 1658 |
| HpySE526I | ACGT | 8 cut(s) | 66, 192, 210, 216, 273, 441, 609, 744 |
| Hsp92I | GRCGYC | 5 cut(s) | 5, 66, 210, 273, 744 |
| Hsp92II | CATG | 4 cut(s) | 283, 769, 799, 1252 |
| HspAI | GCGC | 2 cut(s) | 5, 342 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| KspAI | GTTAAC | 1 cut(s) | 262 |
| KspI | CCGCGG | 1 cut(s) | 340 |
| Kzo9I | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| LmnI | GCTCC | 7 cut(s) | 288, 865, 901, 997, 1136, 1411, 1633 |
| Lsp1109I | GCAGC | 4 cut(s) | 515, 976, 1286, 1496 |
| LweI | GCATC | 4 cut(s) | 501, 578, 651, 1006 |
| MaeI | CTAG | 4 cut(s) | 680, 1088, 1418, 1670 |
| MaeII | ACGT | 8 cut(s) | 66, 192, 210, 216, 273, 441, 609, 744 |
| MaeIII | GTNAC | 7 cut(s) | 62, 84, 437, 682, 886, 1238, 1256 |
| MalI | GATC | 9 cut(s) | 79, 794, 851, 872, 1182, 1247, 1334, 1365, 1656 |
| MboI | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| MboII | GAAGA | 8 cut(s) | 124, 361, 927, 1025, 1490, 1553, 1597, 1651 |
| MflI | RGATCY | 1 cut(s) | 1654 |
| MhlI | GDGCHC | 1 cut(s) | 965 |
| MlsI | TGGCCA | 1 cut(s) | 923 |
| MluCI | AATT | 4 cut(s) | 149, 241, 305, 1556 |
| MluNI | TGGCCA | 1 cut(s) | 923 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 544, 578, 661 |
| MmeI | TCCRAC | 2 cut(s) | 231, 432 |
| Mox20I | TGGCCA | 1 cut(s) | 923 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1119, 1556, 1617 |
| MscI | TGGCCA | 1 cut(s) | 923 |
| MseI | TTAA | 3 cut(s) | 261, 1023, 1128 |
| MslI | CAYNNNNRTG | 1 cut(s) | 738 |
| Msp20I | TGGCCA | 1 cut(s) | 923 |
| MspA1I | CMGCKG | 2 cut(s) | 339, 1487 |
| MspI | CCGG | 9 cut(s) | 89, 186, 377, 602, 1124, 1191, 1218, 1271, 1409 |
| MspR9I | CCNGG | 1 cut(s) | 1218 |
| MvnI | CGCG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 356, 386, 395, 534, 865, 1025, 1280, 1466, 1670 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NciI | CCSGG | 1 cut(s) | 1218 |
| NdeII | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| NheI | GCTAGC | 1 cut(s) | 1087 |
| NlaIII | CATG | 4 cut(s) | 283, 769, 799, 1252 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 897, 906, 1116 |
| NmeAIII | GCCGAG | 1 cut(s) | 234 |
| NmuCI | GTSAC | 4 cut(s) | 62, 682, 886, 1238 |
| PagI | TCATGA | 1 cut(s) | 1248 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 492, 501, 896 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1119, 1556, 1617 |
| PfeI | GAWTC | 8 cut(s) | 506, 721, 826, 1196, 1210, 1526, 1590, 1613 |
| PflFI | GACNNNGTC | 2 cut(s) | 275, 553 |
| PkrI | GCNGC | 9 cut(s) | 238, 328, 341, 358, 530, 823, 991, 1276, 1486 |
| PleI | GAGTC | 3 cut(s) | 544, 578, 661 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PmaCI | CACGTG | 1 cut(s) | 193 |
| PmlI | CACGTG | 1 cut(s) | 193 |
| PpsI | GAGTC | 3 cut(s) | 544, 578, 661 |
| Ppu21I | YACGTR | 1 cut(s) | 193 |
| Psp124BI | GAGCTC | 1 cut(s) | 965 |
| PspCI | CACGTG | 1 cut(s) | 193 |
| PspEI | GGTNACC | 2 cut(s) | 1238, 1256 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 897, 906, 1116 |
| PspPI | GGNCC | 2 cut(s) | 179, 1079 |
| PsuI | RGATCY | 1 cut(s) | 1654 |
| PsyI | GACNNNGTC | 2 cut(s) | 275, 553 |
| PvuII | CAGCTG | 1 cut(s) | 1487 |
| RsaI | GTAC | 2 cut(s) | 197, 1147 |
| RsaNI | GTAC | 2 cut(s) | 196, 1146 |
| RseI | CAYNNNNRTG | 1 cut(s) | 738 |
| SacI | GAGCTC | 1 cut(s) | 965 |
| SacII | CCGCGG | 1 cut(s) | 340 |
| SalI | GTCGAC | 3 cut(s) | 443, 556, 704 |
| SaqAI | TTAA | 3 cut(s) | 261, 1023, 1128 |
| SatI | GCNGC | 9 cut(s) | 237, 327, 340, 357, 529, 822, 990, 1275, 1485 |
| Sau3AI | GATC | 9 cut(s) | 77, 792, 849, 870, 1180, 1245, 1332, 1363, 1654 |
| Sau96I | GGNCC | 2 cut(s) | 179, 1079 |
| SchI | GAGTC | 3 cut(s) | 544, 578, 661 |
| ScrFI | CCNGG | 1 cut(s) | 1218 |
| SduI | GDGCHC | 1 cut(s) | 965 |
| SfaNI | GCATC | 4 cut(s) | 501, 578, 651, 1006 |
| SfcI | CTRYAG | 1 cut(s) | 1278 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| Sfr303I | CCGCGG | 1 cut(s) | 340 |
| SgrBI | CCGCGG | 1 cut(s) | 340 |
| SinI | GGWCC | 2 cut(s) | 179, 1079 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 738 |
| SpeI | ACTAGT | 1 cut(s) | 679 |
| Sse9I | AATT | 4 cut(s) | 149, 241, 305, 1556 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspMI | CTAG | 4 cut(s) | 680, 1088, 1418, 1670 |
| SstI | GAGCTC | 1 cut(s) | 965 |
| StyD4I | CCNGG | 1 cut(s) | 1216 |
| TaaI | ACNGT | 5 cut(s) | 62, 299, 892, 1150, 1304 |
| TaiI | ACGT | 8 cut(s) | 69, 195, 213, 219, 276, 444, 612, 747 |
| TaqII | GACCGA | 2 cut(s) | 1040, 1424 |
| TasI | AATT | 4 cut(s) | 149, 241, 305, 1556 |
| TatI | WGTACW | 1 cut(s) | 195 |
| TauI | GCSGC | 5 cut(s) | 239, 329, 342, 359, 824 |
| TfiI | GAWTC | 8 cut(s) | 506, 721, 826, 1196, 1210, 1526, 1590, 1613 |
| Tru1I | TTAA | 3 cut(s) | 261, 1023, 1128 |
| Tru9I | TTAA | 3 cut(s) | 261, 1023, 1128 |
| TscAI | CASTG | 3 cut(s) | 67, 1089, 1615 |
| TseFI | GTSAC | 4 cut(s) | 62, 682, 886, 1238 |
| TseI | GCWGC | 4 cut(s) | 528, 989, 1274, 1484 |
| Tsp45I | GTSAC | 4 cut(s) | 62, 682, 886, 1238 |
| TspDTI | ATGAA | 6 cut(s) | 761, 1184, 1265, 1301, 1345, 1487 |
| TspGWI | ACGGA | 6 cut(s) | 192, 489, 499, 959, 1077, 1085 |
| TspRI | CASTG | 3 cut(s) | 67, 1089, 1615 |
| Tth111I | GACNNNGTC | 2 cut(s) | 275, 553 |
| VpaK11BI | GGWCC | 2 cut(s) | 179, 1079 |
| XapI | RAATTY | 2 cut(s) | 149, 305 |
| XmiI | GTMKAC | 3 cut(s) | 444, 557, 705 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1119, 1556, 1617 |
| XspI | CTAG | 4 cut(s) | 680, 1088, 1418, 1670 |
| ZraI | GACGTC | 4 cut(s) | 67, 211, 274, 745 |