Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001962

Physical Location & Seq

Genomic Coordinates Forward (+)

5711208 .. 5711588

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAACAAGTGTGGGTCGAGATGCAATCAGTTCAGAATGCTGTGGCAATGATGAATGAAAGGTTCGATAAGGTACAACCAACAATTGACAGCCTAGGCCAAATTGTGGAAGGGCTGAAGACATGCATAATGTCAATGAAGGATGAAAGGGTTGGACGTGAGATTGCGGCAACCATTATTGAACAACTGTTGCAGCAGTGCGACAATGATAGAACGGGAAGAAACTACCCGCCAAATTGCCCCATGGATGACCCAATGAGGGATGTTACAAGGGGTACGTACCATCGAATATTTTCAATGGATGACCCAATACCTGTGGTTCGAAGCAGGGCCTACCGTCAAAATGGCTGCATGGATGACCCAATACCTGTTGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

126

Amino Acids

14.48

Weight (kDa)

5.09

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51680 AT1G51680 AT1G51680 AT3G21240 AT3G21240 AT3G21240
fragaria_vesca	FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940
malus_domestica	MD13G1257800.v1.1 MD17G1229400.v1.1
prunus_persica	Prupe.1G087900_v2.0.a1 Prupe.3G107300_v2.0.a1
pyrus_communis	pycom13g22250 pycom17g23190
rosa_chinensis	RchiOBHm_Chr2g0131501 RchiOBHm_Chr4g0402711 RchiOBHm_Chr5g0057551
rosa_laevigata	RLG00000009052 RLG00000019189
rosa_multiflora	Rmu_co7959539.1_g000001 Rmu_sc0000329.1_g000003 Rmu_sc0002230.1_g000020 Rmu_sc0002451.1_g000001 Rmu_sc0002808.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112820 Rroxscaffold_5G00347470
rosa_rugosa	Rorug02G0297600 Rorug04G0037900
rosa_samantha	Rh2AG350900 Rh2BG357400 Rh2CG336600 Rh2DG375300 Rh4AG115500 Rh4CG122400 Rh4DG108000
rosa_wichuraiana	Rw2G028470 Rw4G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AciI	CCGC	2 cut(s)	167, 230
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	75, 277, 281
AfiI	CCNNNNNNNGG	2 cut(s)	106, 259
AgsI	TTSAA	2 cut(s)	182, 297
AjiI	CACGTC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	97, 330
ApeKI	GCWGC	2 cut(s)	193, 348
Asp700I	GAANNNNTTC	1 cut(s)	292
AspA2I	CCTAGG	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	330
AsuII	TTCGAA	1 cut(s)	322
AvrII	CCTAGG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	205, 335
BccI	CCATC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	3 cut(s)	168, 194, 349
BlnI	CCTAGG	1 cut(s)	94
BlsI	GCNGC	3 cut(s)	169, 195, 350
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	330
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	94, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 259
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	94, 243
BseGI	GGATG	5 cut(s)	148, 253, 268, 307, 361
BseLI	CCNNNNNNNGG	2 cut(s)	106, 259
BseMI	GCAATG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	205, 335
BshFI	GGCC	2 cut(s)	99, 332
BslI	CCNNNNNNNGG	2 cut(s)	106, 259
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	99, 332
Bsp119I	TTCGAA	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	167, 230
BspANI	GGCC	2 cut(s)	99, 332
BspT104I	TTCGAA	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	94, 243
BssT1I	CCWWGG	2 cut(s)	94, 243
Bst4CI	ACNGT	2 cut(s)	189, 338
BstBAI	YACGTR	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	5 cut(s)	148, 253, 268, 307, 361
BstNSI	RCATGY	1 cut(s)	126
BstSNI	TACGTA	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	205, 335
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	99, 332
BtgI	CCRYGG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	5 cut(s)	148, 253, 268, 307, 361
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	3 cut(s)	74, 276, 280
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	3 cut(s)	123, 244, 352
CviJI	RGCY	5 cut(s)	93, 99, 115, 332, 348
CviKI_1	RGCY	5 cut(s)	93, 99, 115, 332, 348
CviQI	GTAC	3 cut(s)	74, 276, 280
Eco105I	TACGTA	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	94, 243
Eco57I	CTGAAG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	94, 243
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	2 cut(s)	94, 243
FaeI	CATG	3 cut(s)	126, 247, 355
FaiI	YATR	4 cut(s)	124, 128, 245, 353
FatI	CATG	3 cut(s)	122, 243, 351
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	168, 194, 349
FokI	GGATG	5 cut(s)	155, 260, 275, 314, 368
Fsp4HI	GCNGC	3 cut(s)	168, 194, 349
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	3 cut(s)	168, 194, 349
HaeIII	GGCC	2 cut(s)	99, 332
Hin1II	CATG	3 cut(s)	126, 247, 355
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	104, 133
HpyCH4III	ACNGT	2 cut(s)	189, 338
HpyCH4IV	ACGT	2 cut(s)	157, 278
HpyCH4V	TGCA	5 cut(s)	25, 126, 193, 351, 376
HpySE526I	ACGT	2 cut(s)	157, 278
Hsp92II	CATG	3 cut(s)	126, 247, 355
LpnPI	CCDG	2 cut(s)	313, 327
Lsp1109I	GCAGC	2 cut(s)	205, 335
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	157, 278
MaeIII	GTNAC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	130, 231
MfeI	CAATTG	1 cut(s)	84
MluCI	AATT	3 cut(s)	84, 102, 235
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	292
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	243
NlaIII	CATG	3 cut(s)	126, 247, 355
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	322
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	169, 195, 350
Ppu21I	YACGTR	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	3 cut(s)	75, 277, 281
RsaNI	GTAC	3 cut(s)	74, 276, 280
SatI	GCNGC	3 cut(s)	168, 194, 349
Sau96I	GGNCC	1 cut(s)	330
SetI	ASST	6 cut(s)	65, 75, 160, 281, 316, 370
SfaNI	GCATC	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	322
SnaBI	TACGTA	1 cut(s)	279
Sse9I	AATT	3 cut(s)	84, 102, 235
SsiI	CCGC	2 cut(s)	167, 230
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	94, 243
TaaI	ACNGT	2 cut(s)	189, 338
TaiI	ACGT	2 cut(s)	160, 281
TaqI	TCGA	4 cut(s)	18, 66, 286, 322
TasI	AATT	3 cut(s)	84, 102, 235
TauI	GCSGC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	193, 348
TspDTI	ATGAA	5 cut(s)	17, 68, 72, 152, 159
TspRI	CASTG	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	106
XceI	RCATGY	1 cut(s)	126
XmaJI	CCTAGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.