Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7959539.1

Orthogroup ID

OG0001962

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 502

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7959539.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 283 bp

gttaccttaatgatccggaggccacaagcacaacgatagacaaggaaggatggctacacacaggtgacataggcttcattgatgatgatgaagagctcttcattgttgatcgactgaaggagattatcaaatacaaaggatttcaggtggctcctgctgagcttgaagccttgctcgtcacccatcctaacatttctgatgccgcagttgtctcaatgaagcatgatgctgctggcgaggttccggttgcctttgtggtgaggtcaaacggatctcagatcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

94

Amino Acids

10.28

Weight (kDa)

4.41

Isoelectric Point (pI)

26.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51680 AT1G51680 AT1G51680 AT3G21240 AT3G21240 AT3G21240
fragaria_vesca	FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_4g09340 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940 FvH4_6g27940
malus_domestica	MD13G1257800.v1.1 MD17G1229400.v1.1
prunus_persica	Prupe.1G087900_v2.0.a1 Prupe.3G107300_v2.0.a1
pyrus_communis	pycom13g22250 pycom17g23190
rosa_chinensis	RchiOBHm_Chr2g0131501 RchiOBHm_Chr4g0402711 RchiOBHm_Chr5g0057551
rosa_laevigata	RLG00000009052 RLG00000019189
rosa_multiflora	Rmu_co7959539.1_g000001 Rmu_sc0000329.1_g000003 Rmu_sc0002230.1_g000020 Rmu_sc0002451.1_g000001 Rmu_sc0002808.1_g000009
rosa_roxburghii	Rroxscaffold_2G00112820 Rroxscaffold_5G00347470
rosa_rugosa	Rorug02G0297600 Rorug04G0037900
rosa_samantha	Rh2AG350900 Rh2BG357400 Rh2CG336600 Rh2DG375300 Rh4AG115500 Rh4CG122400 Rh4DG108000
rosa_wichuraiana	Rw2G028470 Rw4G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	7, 279
AcuI	CTGAAG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	166
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	96, 162
AluI	AGCT	2 cut(s)	96, 162
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	7, 279
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	76, 171, 270
BanII	GRGCYC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	44, 191
BcoDI	GTCTC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	203, 230
BlpI	GCTNAGC	1 cut(s)	158
BlsI	GCNGC	2 cut(s)	204, 231
BmiI	GGNNCC	2 cut(s)	152, 242
BmsI	GCATC	2 cut(s)	189, 216
Bpu1102I	GCTNAGC	1 cut(s)	158
BsaWI	WCCGGW	2 cut(s)	15, 243
BseAI	TCCGGA	1 cut(s)	15
BseGI	GGATG	2 cut(s)	55, 183
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	16, 244
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	12, 108, 271, 278
Bsp1720I	GCTNAGC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	152, 242
BspPI	GGATC	2 cut(s)	7, 279
BspQI	GCTCTTC	2 cut(s)	86, 103
BssMI	GATC	4 cut(s)	12, 108, 271, 278
Bst6I	CTCTTC	2 cut(s)	86, 103
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	158, 275
BstF5I	GGATG	2 cut(s)	55, 183
BstKTI	GATC	4 cut(s)	15, 111, 274, 281
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	4 cut(s)	12, 108, 271, 278
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	55, 183
Cac8I	GCNNGC	1 cut(s)	234
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	7 cut(s)	22, 54, 74, 96, 151, 162, 169
CviKI_1	RGCY	7 cut(s)	22, 54, 74, 96, 151, 162, 169
DdeI	CTNAG	2 cut(s)	158, 275
DpnI	GATC	4 cut(s)	14, 110, 273, 280
DpnII	GATC	4 cut(s)	12, 108, 271, 278
Eam1104I	CTCTTC	2 cut(s)	86, 103
EarI	CTCTTC	2 cut(s)	86, 103
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	1 cut(s)	226
FaiI	YATR	2 cut(s)	70, 224
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	203, 230
FokI	GGATG	2 cut(s)	62, 170
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	203, 230
GluI	GCNGC	2 cut(s)	203, 230
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	16, 244
Hin1II	CATG	1 cut(s)	226
HpaII	CCGG	2 cut(s)	16, 244
HphI	GGTGA	3 cut(s)	76, 171, 270
Hpy188I	TCNGA	2 cut(s)	198, 278
Hpy188III	TCNNGA	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	40, 111
HpyF3I	CTNAG	2 cut(s)	158, 275
Hsp92II	CATG	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	12, 108, 271, 278
LguI	GCTCTTC	2 cut(s)	86, 103
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	6 cut(s)	29, 47, 130, 167, 218, 257
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	189, 216
MaeIII	GTNAC	2 cut(s)	64, 177
MalI	GATC	4 cut(s)	14, 110, 273, 280
MboI	GATC	4 cut(s)	12, 108, 271, 278
MboII	GAAGA	2 cut(s)	90, 103
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	12, 231, 254
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	16, 244
NdeII	GATC	4 cut(s)	12, 108, 271, 278
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	152, 242
NmuCI	GTSAC	2 cut(s)	64, 177
OliI	CACNNNNGTG	1 cut(s)	62
PciSI	GCTCTTC	2 cut(s)	86, 103
PkrI	GCNGC	2 cut(s)	204, 231
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	152, 242
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	98
SapI	GCTCTTC	2 cut(s)	86, 103
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	203, 230
Sau3AI	GATC	4 cut(s)	12, 108, 271, 278
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	7 cut(s)	8, 66, 98, 149, 164, 242, 265
SfaNI	GCATC	2 cut(s)	189, 216
SmiMI	CAYNNNNRTG	1 cut(s)	62
SsiI	CCGC	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	98
TaqI	TCGA	1 cut(s)	111
TauI	GCSGC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	2 cut(s)	64, 177
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	2 cut(s)	64, 177
TspDTI	ATGAA	4 cut(s)	66, 90, 104, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.