AT1G53170

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014245
Physical Location & Seq
Reverse (-)
19821337 .. 19822399
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53170.1

Sequence Viewer

Length: 558 bp
ATGCCCAACATCACCATGGGTTTGAAACCCGACCCGGTTGCTCCAACGAACCCGACTCATCATGAGAGTAATGCTGCCAAAGAGATTCGTTACAGAGGCGTTAGGAAACGTCCATGGGGAAGATACGCCGCTGAGATCCGAGATCCGGTTAAGAAAACTCGAGTCTGGCTCGGTACGTTCGACACCGCTCAGCAGGCGGCGCGTGCTTACGACGCAGCCGCGCGTGACTTTCGTGGTGTTAAGGCTAAGACCAATTTCGGTGTTATCGTTGGTAGTAGTCCTACTCAGAGTAGCACCGTCGTCGACTCTCCCACGGCGGCACGGTTTATAACACCTCCGCACCTCGAGCTCAGCTTAGGCGGCGGCGGCGCGTGTCGTCGTAAGATCCCGCTTGTGCATCCGGTTTACTACTATAACATGGCGACGTATCCAAAGATGACGACGTGTGGTGTCCAGAGCGAGTCTGAAACGTCGTCGGTCGTTGATTTCGAAGGTGGAGCTGGGAAGATATCTCCGCCGTTAGATCTGGATCTTAACTTAGCTCCTCCGGCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016604 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070297 GO:0070298 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

185

Amino Acids

20.02

Weight (kDa)

9.42

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 30 - 78 7.1e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53170
fragaria_vesca FvH4_2g22290
malus_domestica MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica Prupe.8G230600_v2.0.a1
pyrus_communis pycom10g16490
rosa_chinensis RchiOBHm_Chr6g0289271
rosa_laevigata RLG00000012317
rosa_multiflora Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii Rroxscaffold_7G00179380
rosa_rugosa Rorug06G0202400
rosa_samantha Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana Rw6G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 303
AccII CGCG 4 cut(s) 202, 221, 223, 371
AclWI GGATC 4 cut(s) 130, 137, 379, 537
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 1 cut(s) 25
AjiI CACGTC 1 cut(s) 444
AluBI AGCT 4 cut(s) 349, 354, 500, 542
AluI AGCT 4 cut(s) 349, 354, 500, 542
Alw21I GWGCWC 1 cut(s) 351
AlwI GGATC 4 cut(s) 130, 137, 379, 537
Ama87I CYCGRG 2 cut(s) 159, 344
ApeKI GCWGC 2 cut(s) 74, 215
AspLEI GCGC 3 cut(s) 202, 223, 371
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 2 cut(s) 159, 344
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 61, 227
BceAI ACGGC 2 cut(s) 330, 502
BcgI CGANNNNNNTGC 4 cut(s) 20, 54, 283, 317
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 523
BisI GCNGC 9 cut(s) 75, 129, 198, 216, 219, 318, 361, 364, 367
BlpI GCTNAGC 2 cut(s) 189, 350
BlsI GCNGC 9 cut(s) 76, 130, 199, 217, 220, 319, 362, 365, 368
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 2 cut(s) 159, 344
BmgBI CACGTC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 406
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bpu10I CCTNAGC 1 cut(s) 355
Bpu1102I GCTNAGC 2 cut(s) 189, 350
Bpu14I TTCGAA 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 15, 113, 312
BsaWI WCCGGW 2 cut(s) 145, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 15, 113, 312
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 4 cut(s) 123, 203, 299, 364
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 2 cut(s) 61, 227
BseYI CCCAGC 1 cut(s) 500
Bsh1236I CGCG 4 cut(s) 202, 221, 223, 371
Bsh1285I CGRYCG 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 159, 344
BsiSI CCGG 4 cut(s) 35, 146, 401, 548
BslI CCNNNNNNNGG 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 159, 344
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 135, 142, 384, 523, 529
Bsp1720I GCTNAGC 2 cut(s) 189, 350
Bsp19I CCATGG 2 cut(s) 15, 113
BspCNI CTCAG 4 cut(s) 124, 202, 298, 363
BspFNI CGCG 4 cut(s) 202, 221, 223, 371
BspHI TCATGA 1 cut(s) 61
BspPI GGATC 4 cut(s) 130, 137, 379, 537
BspT104I TTCGAA 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 15, 113, 312
BssMI GATC 5 cut(s) 135, 142, 384, 523, 529
BssT1I CCWWGG 2 cut(s) 15, 113
Bst4CI ACNGT 2 cut(s) 298, 324
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 195, 204
BstDEI CTNAG 7 cut(s) 132, 189, 246, 285, 350, 355, 538
BstDSI CCRYGG 3 cut(s) 15, 113, 312
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 4 cut(s) 202, 221, 223, 371
BstHHI GCGC 3 cut(s) 202, 223, 371
BstKTI GATC 5 cut(s) 138, 145, 387, 526, 532
BstMBI GATC 5 cut(s) 135, 142, 384, 523, 529
BstMCI CGRYCG 1 cut(s) 480
BstMWI GCNNNNNNNGC 8 cut(s) 194, 199, 203, 212, 346, 360, 366, 548
BstSCI CCNGG 1 cut(s) 33
BstUI CGCG 4 cut(s) 202, 221, 223, 371
BstV1I GCAGC 2 cut(s) 61, 227
BstX2I RGATCY 5 cut(s) 135, 142, 384, 523, 529
BstYI RGATCY 5 cut(s) 135, 142, 384, 523, 529
BsuI GTATCC 1 cut(s) 438
BtgI CCRYGG 3 cut(s) 15, 113, 312
BtrI CACGTC 1 cut(s) 444
BtsCI GGATG 1 cut(s) 397
Cac8I GCNNGC 2 cut(s) 195, 204
CciI TCATGA 1 cut(s) 61
CfoI GCGC 3 cut(s) 202, 223, 371
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 174
CviAII CATG 4 cut(s) 16, 62, 114, 418
CviJI RGCY 7 cut(s) 169, 218, 245, 349, 354, 500, 542
CviKI_1 RGCY 7 cut(s) 169, 218, 245, 349, 354, 500, 542
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 7 cut(s) 132, 189, 246, 285, 350, 355, 538
DpnI GATC 5 cut(s) 137, 144, 386, 525, 531
DpnII GATC 5 cut(s) 135, 142, 384, 523, 529
EciI GGCGGA 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 15, 113
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 510
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 159, 344
EcoICRI GAGCTC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 15, 113
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 15, 113
FaeI CATG 4 cut(s) 19, 65, 117, 421
FaiI YATR 6 cut(s) 17, 63, 115, 329, 414, 419
FatI CATG 4 cut(s) 15, 61, 113, 417
FauI CCCGC 1 cut(s) 396
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 9 cut(s) 75, 129, 198, 216, 219, 318, 361, 364, 367
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 9 cut(s) 75, 129, 198, 216, 219, 318, 361, 364, 367
GlaI GCGC 3 cut(s) 201, 222, 370
GluI GCNGC 9 cut(s) 75, 129, 198, 216, 219, 318, 361, 364, 367
GsaI CCCAGC 1 cut(s) 504
HapII CCGG 4 cut(s) 35, 146, 401, 548
HgaI GACGC 1 cut(s) 221
HhaI GCGC 3 cut(s) 202, 223, 371
Hin1II CATG 4 cut(s) 19, 65, 117, 421
Hin6I GCGC 3 cut(s) 200, 221, 369
HinP1I GCGC 3 cut(s) 200, 221, 369
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 5 cut(s) 55, 85, 162, 305, 461
HpaII CCGG 4 cut(s) 35, 146, 401, 548
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 304, 406
Hpy188I TCNGA 3 cut(s) 140, 288, 466
Hpy188III TCNNGA 3 cut(s) 62, 454, 527
Hpy8I GTNNAC 2 cut(s) 304, 406
Hpy99I CGWCG 8 cut(s) 215, 302, 305, 381, 427, 445, 475, 478
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 2 cut(s) 298, 324
HpyCH4IV ACGT 5 cut(s) 109, 176, 425, 443, 470
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 199, 203, 212, 346, 360, 366, 548
HpyF3I CTNAG 7 cut(s) 132, 189, 246, 285, 350, 355, 538
HpySE526I ACGT 5 cut(s) 109, 176, 425, 443, 470
Hsp92II CATG 4 cut(s) 19, 65, 117, 421
HspAI GCGC 3 cut(s) 200, 221, 369
Kzo9I GATC 5 cut(s) 135, 142, 384, 523, 529
LmnI GCTCC 3 cut(s) 46, 497, 547
LpnPI CCDG 8 cut(s) 48, 151, 159, 179, 414, 467, 486, 512
Lsp1109I GCAGC 2 cut(s) 61, 227
LweI GCATC 1 cut(s) 406
MaeII ACGT 5 cut(s) 109, 176, 425, 443, 470
MaeIII GTNAC 2 cut(s) 89, 224
MalI GATC 5 cut(s) 137, 144, 386, 525, 531
MbiI CCGCTC 1 cut(s) 188
MboI GATC 5 cut(s) 135, 142, 384, 523, 529
MboII GAAGA 2 cut(s) 132, 517
MflI RGATCY 5 cut(s) 135, 142, 384, 523, 529
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 1 cut(s) 253
MlyI GAGTC 4 cut(s) 49, 171, 299, 470
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 89, 345, 353, 555
MseI TTAA 3 cut(s) 150, 240, 534
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 4 cut(s) 35, 146, 401, 548
MspR9I CCNGG 1 cut(s) 35
MvnI CGCG 4 cut(s) 202, 221, 223, 371
MwoI GCNNNNNNNGC 8 cut(s) 194, 199, 203, 212, 346, 360, 366, 548
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 2 cut(s) 15, 113
NdeII GATC 5 cut(s) 135, 142, 384, 523, 529
NlaIII CATG 4 cut(s) 19, 65, 117, 421
NmuCI GTSAC 1 cut(s) 224
NspV TTCGAA 1 cut(s) 489
PaeR7I CTCGAG 2 cut(s) 159, 344
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 264, 486
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 9 cut(s) 76, 130, 199, 217, 220, 319, 362, 365, 368
PleI GAGTC 4 cut(s) 49, 170, 299, 469
PpsI GAGTC 4 cut(s) 49, 170, 299, 469
PsiI TTATAA 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 500
PspXI VCTCGAGB 2 cut(s) 159, 344
PsuI RGATCY 5 cut(s) 135, 142, 384, 523, 529
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 351
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 150, 240, 534
SatI GCNGC 9 cut(s) 75, 129, 198, 216, 219, 318, 361, 364, 367
Sau3AI GATC 5 cut(s) 135, 142, 384, 523, 529
SchI GAGTC 4 cut(s) 49, 171, 299, 470
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 406
Sfr274I CTCGAG 2 cut(s) 159, 344
SfuI TTCGAA 1 cut(s) 489
SlaI CTCGAG 2 cut(s) 159, 344
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 159, 344
SmoI CTYRAG 2 cut(s) 159, 344
Sse9I AATT 1 cut(s) 253
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 15, 113
TaaI ACNGT 2 cut(s) 298, 324
TaiI ACGT 5 cut(s) 112, 179, 428, 446, 473
TaqI TCGA 5 cut(s) 160, 180, 303, 345, 489
TaqII GACCGA 1 cut(s) 466
TasI AATT 1 cut(s) 253
TauI GCSGC 7 cut(s) 131, 200, 221, 320, 363, 366, 369
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 150, 240, 534
Tru9I TTAA 3 cut(s) 150, 240, 534
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 74, 215
Tsp45I GTSAC 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 2 cut(s) 159, 344
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.