RchiOBHm_Chr6g0289271

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014245
Physical Location & Seq
Forward (+)
52383734 .. 52384564
831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25950

Sequence Viewer

Length: 639 bp
ATGGCGCTCGACGCAATGCACACCTCACTCCACTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCCGGCTAAGGCCTCCAGGGGCGCGATGAGGTCGGCGCACGTCAGAGGCGCGATGAAGAAGAAGGCGGCCCAGGATGGCGGCGAAATGAAGAAGGAGAAGGAGGAGCCCGCGAAAGGCGGCGGCGGAGGTCGGAGGTCGAGGTCGTCCAAGGAGGGGAGTTTCCGTGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGCCGCAGCTCGGGGATTCCGCGGCGTAAGGGCCAAGACGAACTTCGAGAATCCGGCTCCGCCGAAGCAGCACGCGCTCTTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGCGCAAGAACGACCCTGTTCCGGCGCCGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAGGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Protein Analysis

212

Amino Acids

23.21

Weight (kDa)

10.28

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 75 - 119 9.1e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53170
fragaria_vesca FvH4_2g22290
malus_domestica MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica Prupe.8G230600_v2.0.a1
pyrus_communis pycom10g16490
rosa_chinensis RchiOBHm_Chr6g0289271
rosa_laevigata RLG00000012317
rosa_multiflora Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii Rroxscaffold_7G00179380
rosa_rugosa Rorug06G0202400
rosa_samantha Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana Rw6G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 464
AccB1I GGYRCC 2 cut(s) 484, 625
AccII CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
AclWI GGATC 2 cut(s) 41, 269
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 1 cut(s) 532
AcyI GRCGYC 3 cut(s) 345, 485, 626
AfiI CCNNNNNNNGG 5 cut(s) 176, 216, 297, 354, 481
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 3 cut(s) 77, 132, 278
AjuI GAANNNNNNNTTGG 4 cut(s) 371, 403, 557, 589
AluBI AGCT 2 cut(s) 353, 526
AluI AGCT 2 cut(s) 353, 526
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 2 cut(s) 41, 269
Ama87I CYCGRG 2 cut(s) 302, 354
AoxI GGCC 6 cut(s) 72, 129, 242, 250, 375, 538
ApaI GGGCCC 1 cut(s) 542
ApeKI GCWGC 2 cut(s) 350, 412
ApoI RAATTY 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 9 cut(s) 7, 86, 100, 113, 334, 421, 465, 487, 628
AspS9I GGNCC 8 cut(s) 130, 250, 282, 306, 375, 450, 538, 539
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 511, 559
AvaI CYCGRG 2 cut(s) 302, 354
AvaII GGWCC 3 cut(s) 282, 306, 450
BaeGI GKGCMC 1 cut(s) 542
BanI GGYRCC 2 cut(s) 484, 625
BanII GRGCYC 2 cut(s) 171, 542
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 362, 424
BccI CCATC 1 cut(s) 131
BceAI ACGGC 3 cut(s) 229, 583, 613
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 3 cut(s) 79, 134, 280
BcnI CCSGG 1 cut(s) 542
BfoI RGCGCY 3 cut(s) 8, 488, 629
Bme1390I CCNGG 4 cut(s) 79, 134, 280, 542
Bme18I GGWCC 3 cut(s) 282, 306, 450
BmeT110I CYCGRG 2 cut(s) 302, 354
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 8 cut(s) 130, 250, 282, 306, 375, 450, 538, 539
BmiI GGNNCC 9 cut(s) 168, 251, 307, 402, 452, 486, 495, 540, 627
BmrFI CCNGG 4 cut(s) 79, 134, 280, 542
BpmI CTGGAG 2 cut(s) 61, 548
Bpu10I CCTNAGC 2 cut(s) 69, 321
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 3 cut(s) 345, 485, 626
BsaJI CCNNGG 8 cut(s) 78, 132, 210, 226, 245, 261, 278, 364
BsaWI WCCGGW 2 cut(s) 457, 496
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 216, 297, 354, 481
Bse118I RCCGGY 2 cut(s) 64, 487
Bse1I ACTGG 1 cut(s) 604
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 3 cut(s) 79, 134, 280
BseDI CCNNGG 8 cut(s) 78, 132, 210, 226, 245, 261, 278, 364
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 5 cut(s) 176, 216, 297, 354, 481
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 2 cut(s) 42, 179
BseSI GKGCMC 1 cut(s) 542
BseX3I CGGCCG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 362, 424
Bsh1236I CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 6 cut(s) 74, 131, 244, 252, 377, 540
BshNI GGYRCC 2 cut(s) 484, 625
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 2 cut(s) 302, 354
BsiSI CCGG 8 cut(s) 65, 398, 458, 482, 488, 497, 542, 623
BslFI GGGAC 2 cut(s) 274, 319
BslI CCNNNNNNNGG 5 cut(s) 176, 216, 297, 354, 481
BsmFI GGGAC 2 cut(s) 274, 319
BsnI GGCC 6 cut(s) 74, 131, 244, 252, 377, 540
BsoBI CYCGRG 2 cut(s) 302, 354
Bsp120I GGGCCC 1 cut(s) 538
Bsp1286I GDGCHC 3 cut(s) 171, 447, 542
Bsp143I GATC 4 cut(s) 46, 274, 426, 610
Bsp68I TCGCGA 1 cut(s) 273
BspANI GGCC 6 cut(s) 74, 131, 244, 252, 377, 540
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
BspLI GGNNCC 9 cut(s) 168, 251, 307, 402, 452, 486, 495, 540, 627
BspPI GGATC 2 cut(s) 41, 269
BspT107I GGYRCC 2 cut(s) 484, 625
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 64, 487
BsrI ACTGG 1 cut(s) 604
BssAI RCCGGY 2 cut(s) 64, 487
BssECI CCNNGG 8 cut(s) 78, 132, 210, 226, 245, 261, 278, 364
BssMI GATC 4 cut(s) 46, 274, 426, 610
BssNI GRCGYC 3 cut(s) 345, 485, 626
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 79, 134, 280
BstACI GRCGYC 3 cut(s) 345, 485, 626
BstC8I GCNNGC 6 cut(s) 66, 171, 336, 417, 489, 554
BstDEI CTNAG 2 cut(s) 69, 321
BstDSI CCRYGG 4 cut(s) 226, 245, 261, 364
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
BstH2I RGCGCY 3 cut(s) 8, 488, 629
BstHHI GCGC 9 cut(s) 7, 86, 100, 113, 334, 421, 465, 487, 628
BstKTI GATC 4 cut(s) 49, 277, 429, 613
BstMBI GATC 4 cut(s) 46, 274, 426, 610
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 7 cut(s) 11, 326, 335, 344, 412, 418, 491
BstNI CCWGG 3 cut(s) 79, 134, 280
BstSCI CCNGG 4 cut(s) 77, 132, 278, 540
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
BstV1I GCAGC 2 cut(s) 362, 424
BstZI CGGCCG 1 cut(s) 242
BsuRI GGCC 6 cut(s) 74, 131, 244, 252, 377, 540
BtgI CCRYGG 4 cut(s) 226, 245, 261, 364
BtgZI GCGATG 2 cut(s) 101, 128
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 6 cut(s) 66, 171, 336, 417, 489, 554
CfoI GCGC 9 cut(s) 7, 86, 100, 113, 334, 421, 465, 487, 628
Cfr10I RCCGGY 2 cut(s) 64, 487
Cfr13I GGNCC 8 cut(s) 130, 250, 282, 306, 375, 450, 538, 539
Cfr42I CCGCGG 2 cut(s) 264, 367
CseI GACGC 2 cut(s) 20, 353
DdeI CTNAG 2 cut(s) 69, 321
DinI GGCGCC 2 cut(s) 486, 627
DpnI GATC 4 cut(s) 48, 276, 428, 612
DpnII GATC 4 cut(s) 46, 274, 426, 610
EaeI YGGCCR 1 cut(s) 242
EagI CGGCCG 1 cut(s) 242
EciI GGCGGA 4 cut(s) 45, 201, 393, 596
EclXI CGGCCG 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 171, 542
Eco47I GGWCC 3 cut(s) 282, 306, 450
Eco52I CGGCCG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 302, 354
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 3 cut(s) 77, 132, 278
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 2 cut(s) 171, 542
EgeI GGCGCC 2 cut(s) 486, 627
EheI GGCGCC 2 cut(s) 486, 627
ErhI CCWWGG 1 cut(s) 210
FaiI YATR 2 cut(s) 342, 513
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 274, 319
FauI CCCGC 2 cut(s) 178, 299
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 2 cut(s) 171, 542
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 9 cut(s) 6, 85, 99, 112, 333, 420, 464, 486, 627
GsuI CTGGAG 2 cut(s) 61, 548
HaeII RGCGCY 3 cut(s) 8, 488, 629
HaeIII GGCC 6 cut(s) 74, 131, 244, 252, 377, 540
HapII CCGG 8 cut(s) 65, 398, 458, 482, 488, 497, 542, 623
HgaI GACGC 2 cut(s) 20, 353
HhaI GCGC 9 cut(s) 7, 86, 100, 113, 334, 421, 465, 487, 628
Hin1I GRCGYC 3 cut(s) 345, 485, 626
Hin6I GCGC 9 cut(s) 5, 84, 98, 111, 332, 419, 463, 485, 626
HinP1I GCGC 9 cut(s) 5, 84, 98, 111, 332, 419, 463, 485, 626
HinfI GANTC 4 cut(s) 268, 360, 394, 616
HpaII CCGG 8 cut(s) 65, 398, 458, 482, 488, 497, 542, 623
HphI GGTGA 2 cut(s) 511, 559
Hpy188I TCNGA 5 cut(s) 107, 195, 508, 615, 638
Hpy188III TCNNGA 5 cut(s) 272, 304, 391, 424, 448
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 118, 148, 154
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 326, 335, 344, 412, 418, 491
HpyF3I CTNAG 2 cut(s) 69, 321
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 3 cut(s) 345, 485, 626
HspAI GCGC 9 cut(s) 5, 84, 98, 111, 332, 419, 463, 485, 626
KasI GGCGCC 2 cut(s) 484, 625
KroI GCCGGC 2 cut(s) 64, 487
KroNI GCCGGC 2 cut(s) 66, 489
KspI CCGCGG 2 cut(s) 264, 367
Kzo9I GATC 4 cut(s) 46, 274, 426, 610
LmnI GCTCC 3 cut(s) 166, 406, 499
Lsp1109I GCAGC 2 cut(s) 362, 424
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 518
MalI GATC 4 cut(s) 48, 276, 428, 612
MboI GATC 4 cut(s) 46, 274, 426, 610
MboII GAAGA 7 cut(s) 130, 133, 163, 574, 577, 604, 611
MhlI GDGCHC 3 cut(s) 171, 447, 542
MluCI AATT 1 cut(s) 532
Mly113I GGCGCC 2 cut(s) 485, 626
MmeI TCCRAC 2 cut(s) 173, 486
MreI CGCCGGCG 1 cut(s) 487
MroNI GCCGGC 2 cut(s) 64, 487
MroXI GAANNNNTTC 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 263, 366
MspI CCGG 8 cut(s) 65, 398, 458, 482, 488, 497, 542, 623
MspR9I CCNGG 4 cut(s) 79, 134, 280, 542
MvaI CCWGG 3 cut(s) 79, 134, 280
MvnI CGCG 8 cut(s) 86, 113, 173, 263, 273, 334, 366, 419
MwoI GCNNNNNNNGC 7 cut(s) 11, 326, 335, 344, 412, 418, 491
NaeI GCCGGC 2 cut(s) 66, 489
NarI GGCGCC 2 cut(s) 485, 626
NciI CCSGG 1 cut(s) 542
NdeII GATC 4 cut(s) 46, 274, 426, 610
NgoMIV GCCGGC 2 cut(s) 64, 487
NlaIV GGNNCC 9 cut(s) 168, 251, 307, 402, 452, 486, 495, 540, 627
NruI TCGCGA 1 cut(s) 273
NsbI TGCGCA 1 cut(s) 464
PceI AGGCCT 1 cut(s) 74
PdiI GCCGGC 2 cut(s) 66, 489
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 4 cut(s) 268, 360, 394, 616
PflFI GACNNNGTC 1 cut(s) 286
PluTI GGCGCC 2 cut(s) 488, 629
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 77, 132, 278
PspGI CCWGG 3 cut(s) 77, 132, 278
PspN4I GGNNCC 9 cut(s) 168, 251, 307, 402, 452, 486, 495, 540, 627
PspOMI GGGCCC 1 cut(s) 538
PspPI GGNCC 8 cut(s) 130, 250, 282, 306, 375, 450, 538, 539
PspPPI RGGWCCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 286
RruI TCGCGA 1 cut(s) 273
SacII CCGCGG 2 cut(s) 264, 367
Sau3AI GATC 4 cut(s) 46, 274, 426, 610
Sau96I GGNCC 8 cut(s) 130, 250, 282, 306, 375, 450, 538, 539
ScrFI CCNGG 4 cut(s) 79, 134, 280, 542
SduI GDGCHC 3 cut(s) 171, 447, 542
SfoI GGCGCC 2 cut(s) 486, 627
Sfr303I CCGCGG 2 cut(s) 264, 367
SgrAI CRCCGGYG 1 cut(s) 487
SgrBI CCGCGG 2 cut(s) 264, 367
SinI GGWCC 3 cut(s) 282, 306, 450
Sse9I AATT 1 cut(s) 532
SseBI AGGCCT 1 cut(s) 74
SspDI GGCGCC 2 cut(s) 484, 625
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 4 cut(s) 77, 132, 278, 540
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 9, 200, 390
TasI AATT 1 cut(s) 532
TfiI GAWTC 4 cut(s) 268, 360, 394, 616
TscAI CASTG 1 cut(s) 322
TseI GCWGC 2 cut(s) 350, 412
TspDTI ATGAA 3 cut(s) 131, 164, 584
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 322
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 3 cut(s) 282, 306, 450
XapI RAATTY 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.