Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

19705463 .. 19706011

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTACTGTAGACGCGCTCCACCTCCGCGACACAGCACTCTCCCTTGCCGTCGAGCCGCCTTCGCCGCCGCCTGGTATACCTCGACCTCAGCCAAAGCATGCTGCACCCGTCCAAGCTGGCGCAGGCAAGGATCCGCATTTTAGAGGCGTGCGGAAGCGGCCGTGGGGACGGTTCGCCGCTGAGATTCGCGATCCGTGGAAGAAGACTCGGAAGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCGGCGCGTGCATACGACGAGGCCGCGCTTAGCCTCCGTGGTCCCAAGGCCAAGACCAACTTCGGAAATCTCGCTCTTGTTCCGCCTCACTCGCTTCTCCTCGGCGGCGGCTCTGAGATGTTCTGGCCTCCGCCGCCTATGTACTTTATGTCTGGAGCTCCTGCGGTGGCGCCGATTAGGTCGGAGTATAGAGGGTACAAGCTTGAGAATGTGGACGCGGTGGGGGGCCAGGAGGAGAAGAAGATGAGGAAGGACAAGAAGCCGTTCTTATTCGATCTGAATCTGCCGGCGCCGCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

183

Amino Acids

20.05

Weight (kDa)

9.8

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 96	6.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	224, 415, 535
AccI	GTMKAC	3 cut(s)	5, 12, 79
AccII	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
AclWI	GGATC	3 cut(s)	128, 141, 188
AcoI	YGGCCR	1 cut(s)	161
AcyI	GRCGYC	2 cut(s)	416, 536
AfaI	GTAC	2 cut(s)	389, 443
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	73, 474
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	119, 404, 448
AluI	AGCT	3 cut(s)	119, 404, 448
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	3 cut(s)	128, 141, 188
AoxI	GGCC	5 cut(s)	161, 267, 294, 371, 472
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	6 cut(s)	19, 125, 253, 274, 418, 538
AspS9I	GGNCC	2 cut(s)	287, 472
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	3 cut(s)	224, 415, 535
BanII	GRGCYC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	3 cut(s)	35, 148, 493
BciT130I	CCWGG	2 cut(s)	75, 476
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	419, 539
BglI	GCCNNNNNGGC	1 cut(s)	245
BlpI	GCTNAGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	75, 476
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 472
BmiI	GGNNCC	6 cut(s)	135, 226, 289, 417, 473, 537
BmrFI	CCNGG	2 cut(s)	75, 476
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	2 cut(s)	416, 536
BsaJI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	75, 476
BseDI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 346
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	104, 174, 351
BseRI	GAGGAG	3 cut(s)	257, 335, 494
BseX3I	CGGCCG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	5 cut(s)	163, 269, 296, 373, 474
BshNI	GGYRCC	3 cut(s)	224, 415, 535
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	183, 273
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	183, 273
BsnI	GGCC	5 cut(s)	163, 269, 296, 373, 474
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	133, 193, 520
Bsp1720I	GCTNAGC	1 cut(s)	275
Bsp68I	TCGCGA	1 cut(s)	192
BspANI	GGCC	5 cut(s)	163, 269, 296, 373, 474
BspCNI	CTCAG	3 cut(s)	103, 175, 352
BspFNI	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
BspLI	GGNNCC	6 cut(s)	135, 226, 289, 417, 473, 537
BspPI	GGATC	3 cut(s)	128, 141, 188
BspT107I	GGYRCC	3 cut(s)	224, 415, 535
BsrFI	RCCGGY	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 346
BssMI	GATC	3 cut(s)	133, 193, 520
BssNAI	GTATAC	1 cut(s)	80
BssNI	GRCGYC	2 cut(s)	416, 536
BssT1I	CCWWGG	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	75, 476
Bst4CI	ACNGT	2 cut(s)	10, 174
BstACI	GRCGYC	2 cut(s)	416, 536
BstC8I	GCNNGC	6 cut(s)	102, 121, 127, 152, 255, 534
BstDEI	CTNAG	4 cut(s)	90, 183, 275, 360
BstDSI	CCRYGG	3 cut(s)	164, 197, 283
BstFNI	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
BstH2I	RGCGCY	2 cut(s)	419, 539
BstHHI	GCGC	6 cut(s)	19, 125, 253, 274, 418, 538
BstKTI	GATC	3 cut(s)	136, 196, 523
BstMBI	GATC	3 cut(s)	133, 193, 520
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	8 cut(s)	64, 67, 160, 245, 254, 337, 379, 538
BstNI	CCWGG	2 cut(s)	75, 476
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	73, 474
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	80
BstZI	CGGCCG	1 cut(s)	161
BsuRI	GGCC	5 cut(s)	163, 269, 296, 373, 474
BtgI	CCRYGG	3 cut(s)	164, 197, 283
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	6 cut(s)	102, 121, 127, 152, 255, 534
CfoI	GCGC	6 cut(s)	19, 125, 253, 274, 418, 538
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	287, 472
CseI	GACGC	2 cut(s)	23, 470
Csp6I	GTAC	2 cut(s)	388, 442
CviAII	CATG	1 cut(s)	101
CviQI	GTAC	2 cut(s)	388, 442
DdeI	CTNAG	4 cut(s)	90, 183, 275, 360
DinI	GGCGCC	2 cut(s)	417, 537
DpnI	GATC	3 cut(s)	135, 195, 522
DpnII	GATC	3 cut(s)	133, 193, 520
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
EciI	GGCGGA	2 cut(s)	318, 366
Ecl136II	GAGCTC	1 cut(s)	404
EclXI	CGGCCG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	287
Eco52I	CGGCCG	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	73, 474
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	406
EgeI	GGCGCC	2 cut(s)	417, 537
EheI	GGCGCC	2 cut(s)	417, 537
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	1 cut(s)	104
FaiI	YATR	6 cut(s)	80, 102, 259, 386, 395, 435
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 497, 529
FaqI	GGGAC	2 cut(s)	183, 273
FatI	CATG	1 cut(s)	100
FblI	GTMKAC	3 cut(s)	5, 12, 79
FriOI	GRGCYC	1 cut(s)	406
GlaI	GCGC	6 cut(s)	18, 124, 252, 273, 417, 537
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	2 cut(s)	419, 539
HaeIII	GGCC	5 cut(s)	163, 269, 296, 373, 474
HapII	CCGG	1 cut(s)	533
HgaI	GACGC	2 cut(s)	23, 470
HhaI	GCGC	6 cut(s)	19, 125, 253, 274, 418, 538
Hin1I	GRCGYC	2 cut(s)	416, 536
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	6 cut(s)	17, 123, 251, 272, 416, 536
HinP1I	GCGC	6 cut(s)	17, 123, 251, 272, 416, 536
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	187, 208, 526
HpaII	CCGG	1 cut(s)	533
Hpy166II	GTNNAC	4 cut(s)	6, 13, 80, 460
Hpy188I	TCNGA	6 cut(s)	213, 311, 361, 430, 525, 548
Hpy188III	TCNNGA	2 cut(s)	191, 399
Hpy8I	GTNNAC	4 cut(s)	6, 13, 80, 460
Hpy99I	CGWCG	2 cut(s)	56, 266
HpyAV	CCTTC	3 cut(s)	72, 238, 490
HpyCH4III	ACNGT	2 cut(s)	10, 174
HpyCH4V	TGCA	2 cut(s)	107, 257
HpyF10VI	GCNNNNNNNGC	8 cut(s)	64, 67, 160, 245, 254, 337, 379, 538
HpyF3I	CTNAG	4 cut(s)	90, 183, 275, 360
Hsp92I	GRCGYC	2 cut(s)	416, 536
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	6 cut(s)	17, 123, 251, 272, 416, 536
KasI	GGCGCC	2 cut(s)	415, 535
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
Kzo9I	GATC	3 cut(s)	133, 193, 520
LmnI	GCTCC	3 cut(s)	24, 401, 409
LpnPI	CCDG	9 cut(s)	60, 87, 105, 111, 355, 384, 420, 461, 488
Lsp1109I	GCAGC	1 cut(s)	91
MalI	GATC	3 cut(s)	135, 195, 522
MboI	GATC	3 cut(s)	133, 193, 520
MboII	GAAGA	4 cut(s)	214, 217, 496, 499
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	406
Mly113I	GGCGCC	2 cut(s)	416, 536
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	408
MroNI	GCCGGC	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	182, 541
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	75, 476
MvaI	CCWGG	2 cut(s)	75, 476
MvnI	CGCG	6 cut(s)	17, 30, 192, 253, 272, 464
MwoI	GCNNNNNNNGC	8 cut(s)	64, 67, 160, 245, 254, 337, 379, 538
NaeI	GCCGGC	1 cut(s)	534
NarI	GGCGCC	2 cut(s)	416, 536
NdeII	GATC	3 cut(s)	133, 193, 520
NgoMIV	GCCGGC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	6 cut(s)	135, 226, 289, 417, 473, 537
NmeAIII	GCCGAG	3 cut(s)	201, 265, 327
NruI	TCGCGA	1 cut(s)	192
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 237
PdiI	GCCGGC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	187, 526
PleI	GAGTC	1 cut(s)	202
PluTI	GGCGCC	2 cut(s)	419, 539
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	73, 474
PspGI	CCWGG	2 cut(s)	73, 474
PspN4I	GGNNCC	6 cut(s)	135, 226, 289, 417, 473, 537
PspPI	GGNCC	2 cut(s)	287, 472
PsuI	RGATCY	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	2 cut(s)	389, 443
RsaNI	GTAC	2 cut(s)	388, 442
SacI	GAGCTC	1 cut(s)	406
Sau3AI	GATC	3 cut(s)	133, 193, 520
Sau96I	GGNCC	2 cut(s)	287, 472
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	75, 476
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	27, 85, 91, 121, 230, 406, 428, 450
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	2 cut(s)	417, 537
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	104
SspDI	GGCGCC	2 cut(s)	415, 535
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	73, 474
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	10, 174
TaqI	TCGA	4 cut(s)	54, 85, 231, 519
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	187, 526
TseI	GCWGC	1 cut(s)	104
TspGWI	ACGGA	2 cut(s)	186, 272
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	3 cut(s)	5, 12, 79
XmnI	GAANNNNTTC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.