Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

79156 .. 79794

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggcgctcgacgcaatgcacacctcactcccctccctcgccgccgatcctcctccgccgccgccggctaaggcctccaggggcgcgatgaggtcggcgcacgtcagaggcgcgatgaagaagaaggcgggccaggatggcggcgaaatgaagaaggagaaggaggaggccgcgaaagacggcggcggaggtcggaggtcgaggtcgtccaaggaggggagtttccgcggcgtgaggaagcggccgtggggccgatacgccgcggagattcgcgatccctggaccaagtcccgcaagtggctcgggacctttgacactgctgaggaagcagcgcgtgcctatgacgccgccgctcggggattccgcggcgtaagggccaagacgaacttcgagaatccggcgccgccgaagaagcacgcgctcgtgatcgggggcaaggaagtgctctggacccctccggtgcgcaagaacgactctgttccggcgccggcggctccggtgaggtcggagtataagggttacaagctggagaatttgggcccggtggtgagcgagcaggagaagaagatgaagttggcggcggagagcgggaagaagccgttccagtttgatctgaatcttccggcgccgtctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

212

Amino Acids

23.06

Weight (kDa)

10.17

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	464
AccB1I	GGYRCC	3 cut(s)	400, 484, 625
AccBSI	CCGCTC	2 cut(s)	353, 588
AccII	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
AclWI	GGATC	2 cut(s)	41, 269
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	532
AcyI	GRCGYC	4 cut(s)	345, 401, 485, 626
AfiI	CCNNNNNNNGG	3 cut(s)	216, 297, 354
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	77, 132, 278
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 557, 589
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	41, 269
Ama87I	CYCGRG	2 cut(s)	302, 354
AoxI	GGCC	7 cut(s)	72, 130, 168, 242, 250, 375, 538
ApaI	GGGCCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	8 cut(s)	130, 250, 282, 306, 375, 450, 538, 539
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	511, 559
AvaI	CYCGRG	2 cut(s)	302, 354
AvaII	GGWCC	3 cut(s)	282, 306, 450
BaeGI	GKGCMC	1 cut(s)	542
BanI	GGYRCC	3 cut(s)	400, 484, 625
BanII	GRGCYC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	4 cut(s)	196, 229, 583, 613
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	3 cut(s)	79, 134, 280
BcnI	CCSGG	1 cut(s)	542
BfoI	RGCGCY	4 cut(s)	8, 404, 488, 629
BglI	GCCNNNNNGGC	1 cut(s)	138
Bme1390I	CCNGG	4 cut(s)	79, 134, 280, 542
Bme18I	GGWCC	3 cut(s)	282, 306, 450
BmeT110I	CYCGRG	2 cut(s)	302, 354
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	8 cut(s)	130, 250, 282, 306, 375, 450, 538, 539
BmiI	GGNNCC	8 cut(s)	251, 307, 402, 452, 486, 495, 540, 627
BmrFI	CCNGG	4 cut(s)	79, 134, 280, 542
BpmI	CTGGAG	2 cut(s)	61, 548
Bpu10I	CCTNAGC	2 cut(s)	69, 321
BpuMI	CCSGG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	4 cut(s)	345, 401, 485, 626
BsaJI	CCNNGG	7 cut(s)	78, 210, 226, 245, 261, 278, 364
BsaWI	WCCGGW	2 cut(s)	457, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 297, 354
Bse118I	RCCGGY	2 cut(s)	64, 487
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	3 cut(s)	79, 134, 280
BseDI	CCNNGG	7 cut(s)	78, 210, 226, 245, 261, 278, 364
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	216, 297, 354
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	42, 179
BseSI	GKGCMC	1 cut(s)	542
BseX3I	CGGCCG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	341
Bsh1236I	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	7 cut(s)	74, 132, 170, 244, 252, 377, 540
BshNI	GGYRCC	3 cut(s)	400, 484, 625
BsiEI	CGRYCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	302, 354
BsiSI	CCGG	8 cut(s)	65, 398, 458, 482, 488, 497, 542, 623
BslFI	GGGAC	2 cut(s)	274, 319
BslI	CCNNNNNNNGG	3 cut(s)	216, 297, 354
BsmFI	GGGAC	2 cut(s)	274, 319
BsnI	GGCC	7 cut(s)	74, 132, 170, 244, 252, 377, 540
BsoBI	CYCGRG	2 cut(s)	302, 354
Bsp120I	GGGCCC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	447, 542
Bsp143I	GATC	4 cut(s)	46, 274, 426, 610
Bsp68I	TCGCGA	1 cut(s)	273
BspANI	GGCC	7 cut(s)	74, 132, 170, 244, 252, 377, 540
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
BspLI	GGNNCC	8 cut(s)	251, 307, 402, 452, 486, 495, 540, 627
BspPI	GGATC	2 cut(s)	41, 269
BspT107I	GGYRCC	3 cut(s)	400, 484, 625
BsrBI	CCGCTC	2 cut(s)	353, 588
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	64, 487
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	2 cut(s)	64, 487
BssECI	CCNNGG	7 cut(s)	78, 210, 226, 245, 261, 278, 364
BssMI	GATC	4 cut(s)	46, 274, 426, 610
BssNI	GRCGYC	4 cut(s)	345, 401, 485, 626
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	3 cut(s)	79, 134, 280
BstACI	GRCGYC	4 cut(s)	345, 401, 485, 626
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	6 cut(s)	66, 130, 336, 417, 489, 554
BstDEI	CTNAG	2 cut(s)	69, 321
BstDSI	CCRYGG	4 cut(s)	226, 245, 261, 364
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
BstH2I	RGCGCY	4 cut(s)	8, 404, 488, 629
BstKTI	GATC	4 cut(s)	49, 277, 429, 613
BstMBI	GATC	4 cut(s)	46, 274, 426, 610
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 138, 326, 335, 344, 412, 491
BstNI	CCWGG	3 cut(s)	79, 134, 280
BstSCI	CCNGG	4 cut(s)	77, 132, 278, 540
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
BstV1I	GCAGC	1 cut(s)	341
BstZI	CGGCCG	1 cut(s)	242
BsuRI	GGCC	7 cut(s)	74, 132, 170, 244, 252, 377, 540
BtgI	CCRYGG	4 cut(s)	226, 245, 261, 364
BtgZI	GCGATG	2 cut(s)	101, 128
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
BtuMI	TCGCGA	1 cut(s)	273
Cac8I	GCNNGC	6 cut(s)	66, 130, 336, 417, 489, 554
Cfr10I	RCCGGY	2 cut(s)	64, 487
Cfr13I	GGNCC	8 cut(s)	130, 250, 282, 306, 375, 450, 538, 539
Cfr42I	CCGCGG	3 cut(s)	229, 264, 367
CseI	GACGC	2 cut(s)	20, 353
DdeI	CTNAG	2 cut(s)	69, 321
DinI	GGCGCC	3 cut(s)	402, 486, 627
DpnI	GATC	4 cut(s)	48, 276, 428, 612
DpnII	GATC	4 cut(s)	46, 274, 426, 610
EaeI	YGGCCR	1 cut(s)	242
EagI	CGGCCG	1 cut(s)	242
EciI	GGCGGA	3 cut(s)	45, 201, 596
EclXI	CGGCCG	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	3 cut(s)	282, 306, 450
Eco52I	CGGCCG	1 cut(s)	242
Eco88I	CYCGRG	2 cut(s)	302, 354
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	77, 132, 278
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	542
EgeI	GGCGCC	3 cut(s)	402, 486, 627
EheI	GGCGCC	3 cut(s)	402, 486, 627
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	2 cut(s)	342, 513
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	274, 319
FauI	CCCGC	3 cut(s)	121, 299, 581
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	542
FspI	TGCGCA	1 cut(s)	464
GsuI	CTGGAG	2 cut(s)	61, 548
HaeII	RGCGCY	4 cut(s)	8, 404, 488, 629
HaeIII	GGCC	7 cut(s)	74, 132, 170, 244, 252, 377, 540
HapII	CCGG	8 cut(s)	65, 398, 458, 482, 488, 497, 542, 623
HgaI	GACGC	2 cut(s)	20, 353
Hin1I	GRCGYC	4 cut(s)	345, 401, 485, 626
HinfI	GANTC	5 cut(s)	268, 360, 394, 473, 616
HpaII	CCGG	8 cut(s)	65, 398, 458, 482, 488, 497, 542, 623
HphI	GGTGA	2 cut(s)	511, 559
Hpy188I	TCNGA	5 cut(s)	107, 195, 508, 615, 638
Hpy188III	TCNNGA	5 cut(s)	272, 304, 391, 424, 448
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	118, 148, 154
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 138, 326, 335, 344, 412, 491
HpyF3I	CTNAG	2 cut(s)	69, 321
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	4 cut(s)	345, 401, 485, 626
KasI	GGCGCC	3 cut(s)	400, 484, 625
KroI	GCCGGC	2 cut(s)	64, 487
KroNI	GCCGGC	2 cut(s)	66, 489
KspI	CCGCGG	3 cut(s)	229, 264, 367
Kzo9I	GATC	4 cut(s)	46, 274, 426, 610
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	1 cut(s)	341
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	4 cut(s)	48, 276, 428, 612
MbiI	CCGCTC	2 cut(s)	353, 588
MboI	GATC	4 cut(s)	46, 274, 426, 610
MboII	GAAGA	8 cut(s)	130, 133, 163, 421, 574, 577, 604, 611
MhlI	GDGCHC	2 cut(s)	447, 542
MluCI	AATT	1 cut(s)	532
Mly113I	GGCGCC	3 cut(s)	401, 485, 626
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	173, 486
MreI	CGCCGGCG	1 cut(s)	487
MroNI	GCCGGC	2 cut(s)	64, 487
MroXI	GAANNNNTTC	1 cut(s)	599
MspA1I	CMGCKG	3 cut(s)	228, 263, 366
MspI	CCGG	8 cut(s)	65, 398, 458, 482, 488, 497, 542, 623
MspR9I	CCNGG	4 cut(s)	79, 134, 280, 542
MvaI	CCWGG	3 cut(s)	79, 134, 280
MvnI	CGCG	9 cut(s)	86, 113, 173, 228, 263, 273, 334, 366, 419
MwoI	GCNNNNNNNGC	7 cut(s)	11, 138, 326, 335, 344, 412, 491
NaeI	GCCGGC	2 cut(s)	66, 489
NarI	GGCGCC	3 cut(s)	401, 485, 626
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	4 cut(s)	46, 274, 426, 610
NgoMIV	GCCGGC	2 cut(s)	64, 487
NlaIV	GGNNCC	8 cut(s)	251, 307, 402, 452, 486, 495, 540, 627
NruI	TCGCGA	1 cut(s)	273
NsbI	TGCGCA	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	2 cut(s)	66, 489
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	4 cut(s)	268, 360, 394, 616
PflFI	GACNNNGTC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	467
PluTI	GGCGCC	3 cut(s)	404, 488, 629
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	77, 132, 278
PspGI	CCWGG	3 cut(s)	77, 132, 278
PspN4I	GGNNCC	8 cut(s)	251, 307, 402, 452, 486, 495, 540, 627
PspOMI	GGGCCC	1 cut(s)	538
PspPI	GGNCC	8 cut(s)	130, 250, 282, 306, 375, 450, 538, 539
PspPPI	RGGWCCY	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	273
SacII	CCGCGG	3 cut(s)	229, 264, 367
Sau3AI	GATC	4 cut(s)	46, 274, 426, 610
Sau96I	GGNCC	8 cut(s)	130, 250, 282, 306, 375, 450, 538, 539
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	4 cut(s)	79, 134, 280, 542
SduI	GDGCHC	2 cut(s)	447, 542
SetI	ASST	9 cut(s)	26, 95, 105, 193, 200, 206, 311, 506, 528
SfoI	GGCGCC	3 cut(s)	402, 486, 627
Sfr303I	CCGCGG	3 cut(s)	229, 264, 367
SgrAI	CRCCGGYG	1 cut(s)	487
SgrBI	CCGCGG	3 cut(s)	229, 264, 367
SinI	GGWCC	3 cut(s)	282, 306, 450
Sse9I	AATT	1 cut(s)	532
SseBI	AGGCCT	1 cut(s)	74
SspDI	GGCGCC	3 cut(s)	400, 484, 625
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	77, 132, 278, 540
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	9, 200, 390
TasI	AATT	1 cut(s)	532
TfiI	GAWTC	4 cut(s)	268, 360, 394, 616
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	131, 164, 584
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	282, 306, 450
XapI	RAATTY	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.