Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Reverse (-)

17428771 .. 17429412

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGCTCGACGCAATGCACACCTCACTCCCCTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCAGGCTAAGGCCTCCAGGGGCGAGATGAGGTCGGCGCACGTCAGAGGCGCGATAAAGAAGAAGGCGGCGCAGGATGGCGGCGAAATGAAGAAGGAGAAGGAGGAGGCCGCGAAAGGCGGCGGCGGCGGAGGTCGGAGGTCAAGGTCGTCCAAGGAGGGGCGTTTCCGCGGAGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAGGCGGCGCGTGCCTATGACGACGCCGCCCGGGGATTCCGTGGCGTAAGGGCCAAGACGAACTTCGAGAATCCGGAGCTGCCGAAACAGCACGCGCTCGGGATCGGGGGCAAGGAAGTGCTCTTGACCCCTCCGGTGCTCAAGAACGACTCTGTTCCGGCGCCGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGGCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAAGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

214

Amino Acids

23.24

Weight (kDa)

10.05

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	75 - 120	7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	487, 628
AccII	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
AccIII	TCCGGA	1 cut(s)	400
AclWI	GGATC	3 cut(s)	41, 272, 437
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	535
AcyI	GRCGYC	3 cut(s)	351, 488, 629
AfiI	CCNNNNNNNGG	2 cut(s)	219, 300
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	77, 281
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 560, 592
AluBI	AGCT	2 cut(s)	406, 529
AluI	AGCT	2 cut(s)	406, 529
Alw21I	GWGCWC	2 cut(s)	450, 468
AlwI	GGATC	3 cut(s)	41, 272, 437
Ama87I	CYCGRG	3 cut(s)	305, 357, 425
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	6 cut(s)	72, 168, 245, 253, 378, 542
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	535
Asp700I	GAANNNNTTC	1 cut(s)	602
AspLEI	GCGC	8 cut(s)	7, 100, 113, 133, 337, 424, 490, 631
AspS9I	GGNCC	5 cut(s)	253, 285, 309, 378, 542
AsuC2I	CCSGG	2 cut(s)	358, 359
AsuHPI	GGTGA	2 cut(s)	514, 562
AvaI	CYCGRG	3 cut(s)	305, 357, 425
AvaII	GGWCC	2 cut(s)	285, 309
BanI	GGYRCC	2 cut(s)	487, 628
Bbv12I	GWGCWC	2 cut(s)	450, 468
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	232, 586, 616
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	2 cut(s)	79, 283
BcnI	CCSGG	2 cut(s)	358, 359
BfoI	RGCGCY	3 cut(s)	8, 491, 632
Bme1390I	CCNGG	4 cut(s)	79, 283, 358, 359
Bme18I	GGWCC	2 cut(s)	285, 309
BmeT110I	CYCGRG	3 cut(s)	305, 357, 425
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	5 cut(s)	253, 285, 309, 378, 542
BmiI	GGNNCC	6 cut(s)	254, 310, 489, 498, 543, 630
BmrFI	CCNGG	4 cut(s)	79, 283, 358, 359
BpmI	CTGGAG	2 cut(s)	61, 551
Bpu10I	CCTNAGC	2 cut(s)	69, 324
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	358, 359
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	3 cut(s)	351, 488, 629
BsaJI	CCNNGG	9 cut(s)	78, 213, 229, 248, 264, 281, 357, 358, 367
BsaWI	WCCGGW	3 cut(s)	400, 460, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 300
Bse118I	RCCGGY	2 cut(s)	490, 544
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	618
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	79, 283
BseDI	CCNNGG	9 cut(s)	78, 213, 229, 248, 264, 281, 357, 358, 367
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	219, 300
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	3 cut(s)	42, 179, 341
BseX3I	CGGCCG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	393
Bsh1236I	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	6 cut(s)	74, 170, 247, 255, 380, 544
BshNI	GGYRCC	2 cut(s)	487, 628
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	450, 468
BsiHKCI	CYCGRG	3 cut(s)	305, 357, 425
BsiSI	CCGG	8 cut(s)	358, 401, 461, 485, 491, 500, 545, 626
BslFI	GGGAC	2 cut(s)	277, 322
BslI	CCNNNNNNNGG	2 cut(s)	219, 300
BsmFI	GGGAC	2 cut(s)	277, 322
BsnI	GGCC	6 cut(s)	74, 170, 247, 255, 380, 544
BsoBI	CYCGRG	3 cut(s)	305, 357, 425
Bsp1286I	GDGCHC	2 cut(s)	450, 468
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	46, 277, 429, 613
Bsp68I	TCGCGA	1 cut(s)	276
BspANI	GGCC	6 cut(s)	74, 170, 247, 255, 380, 544
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
BspLI	GGNNCC	6 cut(s)	254, 310, 489, 498, 543, 630
BspPI	GGATC	3 cut(s)	41, 272, 437
BspT107I	GGYRCC	2 cut(s)	487, 628
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	490, 544
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	2 cut(s)	490, 544
BssECI	CCNNGG	9 cut(s)	78, 213, 229, 248, 264, 281, 357, 358, 367
BssMI	GATC	4 cut(s)	46, 277, 429, 613
BssNI	GRCGYC	3 cut(s)	351, 488, 629
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	79, 283
BstACI	GRCGYC	3 cut(s)	351, 488, 629
BstC8I	GCNNGC	5 cut(s)	66, 339, 420, 492, 557
BstDEI	CTNAG	2 cut(s)	69, 324
BstDSI	CCRYGG	4 cut(s)	229, 248, 264, 367
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
BstH2I	RGCGCY	3 cut(s)	8, 491, 632
BstHHI	GCGC	8 cut(s)	7, 100, 113, 133, 337, 424, 490, 631
BstKTI	GATC	4 cut(s)	49, 280, 432, 616
BstMBI	GATC	4 cut(s)	46, 277, 429, 613
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 186, 329, 338, 415, 494
BstNI	CCWGG	2 cut(s)	79, 283
BstSCI	CCNGG	4 cut(s)	77, 281, 356, 357
BstUI	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
BstV1I	GCAGC	1 cut(s)	393
BstZI	CGGCCG	1 cut(s)	245
BsuRI	GGCC	6 cut(s)	74, 170, 247, 255, 380, 544
BtgI	CCRYGG	4 cut(s)	229, 248, 264, 367
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	1 cut(s)	276
Cac8I	GCNNGC	5 cut(s)	66, 339, 420, 492, 557
CfoI	GCGC	8 cut(s)	7, 100, 113, 133, 337, 424, 490, 631
Cfr10I	RCCGGY	2 cut(s)	490, 544
Cfr13I	GGNCC	5 cut(s)	253, 285, 309, 378, 542
Cfr42I	CCGCGG	2 cut(s)	232, 267
Cfr9I	CCCGGG	1 cut(s)	357
CseI	GACGC	2 cut(s)	20, 359
DdeI	CTNAG	2 cut(s)	69, 324
DinI	GGCGCC	2 cut(s)	489, 630
DpnI	GATC	4 cut(s)	48, 279, 431, 615
DpnII	GATC	4 cut(s)	46, 277, 429, 613
EaeI	YGGCCR	1 cut(s)	245
EagI	CGGCCG	1 cut(s)	245
EciI	GGCGGA	3 cut(s)	45, 204, 599
EclXI	CGGCCG	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	285, 309
Eco52I	CGGCCG	1 cut(s)	245
Eco88I	CYCGRG	3 cut(s)	305, 357, 425
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	77, 281
EcoT14I	CCWWGG	1 cut(s)	213
EgeI	GGCGCC	2 cut(s)	489, 630
EheI	GGCGCC	2 cut(s)	489, 630
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	2 cut(s)	345, 516
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	2 cut(s)	277, 322
FauI	CCCGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	149
GlaI	GCGC	8 cut(s)	6, 99, 112, 132, 336, 423, 489, 630
GsuI	CTGGAG	2 cut(s)	61, 551
HaeII	RGCGCY	3 cut(s)	8, 491, 632
HaeIII	GGCC	6 cut(s)	74, 170, 247, 255, 380, 544
HapII	CCGG	8 cut(s)	358, 401, 461, 485, 491, 500, 545, 626
HgaI	GACGC	2 cut(s)	20, 359
HhaI	GCGC	8 cut(s)	7, 100, 113, 133, 337, 424, 490, 631
Hin1I	GRCGYC	3 cut(s)	351, 488, 629
Hin6I	GCGC	8 cut(s)	5, 98, 111, 131, 335, 422, 488, 629
HinP1I	GCGC	8 cut(s)	5, 98, 111, 131, 335, 422, 488, 629
HinfI	GANTC	5 cut(s)	271, 363, 397, 476, 619
HpaII	CCGG	8 cut(s)	358, 401, 461, 485, 491, 500, 545, 626
HphI	GGTGA	2 cut(s)	514, 562
Hpy188I	TCNGA	5 cut(s)	107, 198, 511, 618, 641
Hpy188III	TCNNGA	7 cut(s)	275, 307, 394, 401, 427, 451, 469
Hpy99I	CGWCG	2 cut(s)	14, 353
HpyAV	CCTTC	3 cut(s)	118, 148, 154
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 186, 329, 338, 415, 494
HpyF3I	CTNAG	2 cut(s)	69, 324
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	3 cut(s)	351, 488, 629
HspAI	GCGC	8 cut(s)	5, 98, 111, 131, 335, 422, 488, 629
KasI	GGCGCC	2 cut(s)	487, 628
Kpn2I	TCCGGA	1 cut(s)	400
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
KspI	CCGCGG	2 cut(s)	232, 267
Kzo9I	GATC	4 cut(s)	46, 277, 429, 613
LmnI	GCTCC	2 cut(s)	403, 502
Lsp1109I	GCAGC	1 cut(s)	393
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	4 cut(s)	48, 279, 431, 615
MboI	GATC	4 cut(s)	46, 277, 429, 613
MboII	GAAGA	6 cut(s)	133, 163, 577, 580, 607, 614
MhlI	GDGCHC	2 cut(s)	450, 468
MluCI	AATT	1 cut(s)	535
Mly113I	GGCGCC	2 cut(s)	488, 629
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	176, 489
MreI	CGCCGGCG	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	400
MroNI	GCCGGC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	231, 266
MspI	CCGG	8 cut(s)	358, 401, 461, 485, 491, 500, 545, 626
MspR9I	CCNGG	4 cut(s)	79, 283, 358, 359
MvaI	CCWGG	2 cut(s)	79, 283
MvnI	CGCG	7 cut(s)	113, 173, 231, 266, 276, 337, 422
MwoI	GCNNNNNNNGC	6 cut(s)	11, 186, 329, 338, 415, 494
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	2 cut(s)	488, 629
NciI	CCSGG	2 cut(s)	358, 359
NdeII	GATC	4 cut(s)	46, 277, 429, 613
NgoMIV	GCCGGC	1 cut(s)	490
NlaIV	GGNNCC	6 cut(s)	254, 310, 489, 498, 543, 630
NruI	TCGCGA	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	4 cut(s)	271, 363, 397, 619
PflFI	GACNNNGTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	470
PluTI	GGCGCC	2 cut(s)	491, 632
PpsI	GAGTC	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	77, 281
PspGI	CCWGG	2 cut(s)	77, 281
PspN4I	GGNNCC	6 cut(s)	254, 310, 489, 498, 543, 630
PspPI	GGNCC	5 cut(s)	253, 285, 309, 378, 542
PspPPI	RGGWCCY	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	289
RruI	TCGCGA	1 cut(s)	276
SacII	CCGCGG	2 cut(s)	232, 267
Sau3AI	GATC	4 cut(s)	46, 277, 429, 613
Sau96I	GGNCC	5 cut(s)	253, 285, 309, 378, 542
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	4 cut(s)	79, 283, 358, 359
SduI	GDGCHC	2 cut(s)	450, 468
SfoI	GGCGCC	2 cut(s)	489, 630
Sfr303I	CCGCGG	2 cut(s)	232, 267
SgrAI	CRCCGGYG	1 cut(s)	490
SgrBI	CCGCGG	2 cut(s)	232, 267
SinI	GGWCC	2 cut(s)	285, 309
SmaI	CCCGGG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	1 cut(s)	535
SseBI	AGGCCT	1 cut(s)	74
SspDI	GGCGCC	2 cut(s)	487, 628
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	77, 281, 356, 357
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	9, 393
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	4 cut(s)	271, 363, 397, 619
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	164, 587
TspGWI	ACGGA	1 cut(s)	356
TspMI	CCCGGG	1 cut(s)	357
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	285, 309
XapI	RAATTY	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.