Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034080.1

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 460

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 460 bp

cggcggcggaggtcggaggtcgaggtcgtccaaggaggggagtttccgcggcgtgaggaagcggccgtggggccgatacgccgcggagattcgcgatccctggaccaagtcccgcaagtggctcgggacctttgacactgctgaggaagcagcgcgtgcctatgacgccgccgctcggggattccgcggcgtaagggccaagacgaacttcgagaatccggcgccgccgaagaagcacgcgctcgtgatcgggggcaaggaagtgctctggacccctccggtgcgcaagaacgactctgttccggcgccggcggctccggtgaggtcggagtataagggttacaagctggagaatttgggcccggtggtgagcgagcaggagaagaagatgaagttggcggcggagagcgggaagaagccgttccagtttgatctgaatcttccggcgccgtctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

10.34

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
AccB1I	GGYRCC	3 cut(s)	221, 305, 446
AccBSI	CCGCTC	2 cut(s)	174, 409
AccII	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	4 cut(s)	166, 222, 306, 447
AfiI	CCNNNNNNNGG	3 cut(s)	37, 118, 175
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	4 cut(s)	192, 224, 378, 410
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	2 cut(s)	123, 175
AoxI	GGCC	4 cut(s)	63, 71, 196, 359
ApaI	GGGCCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	6 cut(s)	155, 224, 242, 286, 308, 449
AspS9I	GGNCC	7 cut(s)	71, 103, 127, 196, 271, 359, 360
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	332, 380
AvaI	CYCGRG	2 cut(s)	123, 175
AvaII	GGWCC	3 cut(s)	103, 127, 271
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	3 cut(s)	221, 305, 446
BanII	GRGCYC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	162
BceAI	ACGGC	3 cut(s)	50, 404, 434
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	363
BfoI	RGCGCY	3 cut(s)	225, 309, 450
Bme1390I	CCNGG	2 cut(s)	101, 363
Bme18I	GGWCC	3 cut(s)	103, 127, 271
BmeT110I	CYCGRG	2 cut(s)	123, 175
BmgT120I	GGNCC	7 cut(s)	71, 103, 127, 196, 271, 359, 360
BmiI	GGNNCC	8 cut(s)	72, 128, 223, 273, 307, 316, 361, 448
BmrFI	CCNGG	2 cut(s)	101, 363
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	436
BsaHI	GRCGYC	4 cut(s)	166, 222, 306, 447
BsaJI	CCNNGG	6 cut(s)	31, 47, 66, 82, 99, 185
BsaWI	WCCGGW	2 cut(s)	278, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 118, 175
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	6 cut(s)	31, 47, 66, 82, 99, 185
BseJI	GATNNNNATC	1 cut(s)	436
BseLI	CCNNNNNNNGG	3 cut(s)	37, 118, 175
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	363
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	4 cut(s)	65, 73, 198, 361
BshNI	GGYRCC	3 cut(s)	221, 305, 446
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	2 cut(s)	123, 175
BsiSI	CCGG	7 cut(s)	219, 279, 303, 309, 318, 363, 444
BslFI	GGGAC	2 cut(s)	95, 140
BslI	CCNNNNNNNGG	3 cut(s)	37, 118, 175
BsmFI	GGGAC	2 cut(s)	95, 140
BsnI	GGCC	4 cut(s)	65, 73, 198, 361
BsoBI	CYCGRG	2 cut(s)	123, 175
Bsp120I	GGGCCC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	268, 363
Bsp143I	GATC	3 cut(s)	95, 247, 431
Bsp68I	TCGCGA	1 cut(s)	94
BspANI	GGCC	4 cut(s)	65, 73, 198, 361
BspCNI	CTCAG	1 cut(s)	134
BspFNI	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
BspLI	GGNNCC	8 cut(s)	72, 128, 223, 273, 307, 316, 361, 448
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	3 cut(s)	221, 305, 446
BsrBI	CCGCTC	2 cut(s)	174, 409
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	6 cut(s)	31, 47, 66, 82, 99, 185
BssMI	GATC	3 cut(s)	95, 247, 431
BssNI	GRCGYC	4 cut(s)	166, 222, 306, 447
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	101
BstACI	GRCGYC	4 cut(s)	166, 222, 306, 447
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	157, 238, 310, 375
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	4 cut(s)	47, 66, 82, 185
BstFNI	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
BstH2I	RGCGCY	3 cut(s)	225, 309, 450
BstHHI	GCGC	6 cut(s)	155, 224, 242, 286, 308, 449
BstKTI	GATC	3 cut(s)	98, 250, 434
BstMBI	GATC	3 cut(s)	95, 247, 431
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 156, 165, 233, 312
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	99, 361
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
BstV1I	GCAGC	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	65, 73, 198, 361
BtgI	CCRYGG	4 cut(s)	47, 66, 82, 185
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
BtuMI	TCGCGA	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	157, 238, 310, 375
CfoI	GCGC	6 cut(s)	155, 224, 242, 286, 308, 449
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	7 cut(s)	71, 103, 127, 196, 271, 359, 360
Cfr42I	CCGCGG	3 cut(s)	50, 85, 188
CseI	GACGC	1 cut(s)	174
CviJI	RGCY	8 cut(s)	65, 73, 122, 198, 315, 347, 361, 419
CviKI_1	RGCY	8 cut(s)	65, 73, 122, 198, 315, 347, 361, 419
DdeI	CTNAG	1 cut(s)	142
DinI	GGCGCC	3 cut(s)	223, 307, 448
DpnI	GATC	3 cut(s)	97, 249, 433
DpnII	GATC	3 cut(s)	95, 247, 431
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EciI	GGCGGA	2 cut(s)	22, 417
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	3 cut(s)	103, 127, 271
Eco52I	CGGCCG	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	123, 175
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	363
EgeI	GGCGCC	3 cut(s)	223, 307, 448
EheI	GGCGCC	3 cut(s)	223, 307, 448
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	2 cut(s)	163, 334
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	95, 140
FauI	CCCGC	2 cut(s)	120, 402
FriOI	GRGCYC	1 cut(s)	363
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	6 cut(s)	154, 223, 241, 285, 307, 448
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	3 cut(s)	225, 309, 450
HaeIII	GGCC	4 cut(s)	65, 73, 198, 361
HapII	CCGG	7 cut(s)	219, 279, 303, 309, 318, 363, 444
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	6 cut(s)	155, 224, 242, 286, 308, 449
Hin1I	GRCGYC	4 cut(s)	166, 222, 306, 447
Hin6I	GCGC	6 cut(s)	153, 222, 240, 284, 306, 447
HinP1I	GCGC	6 cut(s)	153, 222, 240, 284, 306, 447
HinfI	GANTC	5 cut(s)	89, 181, 215, 294, 437
HpaII	CCGG	7 cut(s)	219, 279, 303, 309, 318, 363, 444
HphI	GGTGA	2 cut(s)	332, 380
Hpy188I	TCNGA	4 cut(s)	16, 329, 436, 459
Hpy188III	TCNNGA	5 cut(s)	93, 125, 212, 245, 269
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 156, 165, 233, 312
HpyF3I	CTNAG	1 cut(s)	142
Hsp92I	GRCGYC	4 cut(s)	166, 222, 306, 447
HspAI	GCGC	6 cut(s)	153, 222, 240, 284, 306, 447
KasI	GGCGCC	3 cut(s)	221, 305, 446
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
KspI	CCGCGG	3 cut(s)	50, 85, 188
Kzo9I	GATC	3 cut(s)	95, 247, 431
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	97, 249, 433
MbiI	CCGCTC	2 cut(s)	174, 409
MboI	GATC	3 cut(s)	95, 247, 431
MboII	GAAGA	5 cut(s)	242, 395, 398, 425, 432
MhlI	GDGCHC	2 cut(s)	268, 363
MluCI	AATT	1 cut(s)	353
Mly113I	GGCGCC	3 cut(s)	222, 306, 447
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	3, 10, 16, 29, 49, 137, 286, 316
MreI	CGCCGGCG	1 cut(s)	308
MroNI	GCCGGC	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	420
MspA1I	CMGCKG	3 cut(s)	49, 84, 187
MspI	CCGG	7 cut(s)	219, 279, 303, 309, 318, 363, 444
MspR9I	CCNGG	2 cut(s)	101, 363
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	6 cut(s)	49, 84, 94, 155, 187, 240
MwoI	GCNNNNNNNGC	5 cut(s)	147, 156, 165, 233, 312
NaeI	GCCGGC	1 cut(s)	310
NarI	GGCGCC	3 cut(s)	222, 306, 447
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	95, 247, 431
NgoMIV	GCCGGC	1 cut(s)	308
NlaIV	GGNNCC	8 cut(s)	72, 128, 223, 273, 307, 316, 361, 448
NruI	TCGCGA	1 cut(s)	94
NsbI	TGCGCA	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	89, 181, 215, 437
PflFI	GACNNNGTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	288
PluTI	GGCGCC	3 cut(s)	225, 309, 450
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	8 cut(s)	72, 128, 223, 273, 307, 316, 361, 448
PspOMI	GGGCCC	1 cut(s)	359
PspPI	GGNCC	7 cut(s)	71, 103, 127, 196, 271, 359, 360
PspPPI	RGGWCCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	94
SacII	CCGCGG	3 cut(s)	50, 85, 188
Sau3AI	GATC	3 cut(s)	95, 247, 431
Sau96I	GGNCC	7 cut(s)	71, 103, 127, 196, 271, 359, 360
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	101, 363
SduI	GDGCHC	2 cut(s)	268, 363
SetI	ASST	6 cut(s)	14, 21, 27, 132, 327, 349
SfoI	GGCGCC	3 cut(s)	223, 307, 448
Sfr303I	CCGCGG	3 cut(s)	50, 85, 188
SgrAI	CRCCGGYG	1 cut(s)	308
SgrBI	CCGCGG	3 cut(s)	50, 85, 188
SinI	GGWCC	3 cut(s)	103, 127, 271
Sse9I	AATT	1 cut(s)	353
SspDI	GGCGCC	3 cut(s)	221, 305, 446
StyD4I	CCNGG	2 cut(s)	99, 361
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	2 cut(s)	21, 211
TasI	AATT	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	89, 181, 215, 437
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	103, 127, 271
XapI	RAATTY	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.