Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

50760039 .. 50760487

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGAAGGAGAAGGAGGAGGCCGCGAAAGACGGCGGCGGAGGTCGGAGGTCGAGGTCGTCCAAGGAGGGGAGTTTCCGCGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGCAAGCGGCGCGTGCCTATGACGCCGCCGCTCGGGGATTCCGCGGCGTAAGGGCCAAGACGAACTTCGAGAATCCGGCGCCGCCGAAGCAGCACGCGCTCTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAGGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

134

Amino Acids

15.16

Weight (kDa)

10.28

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	26 - 71	1.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	253, 391
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	3 cut(s)	198, 254, 392
AfiI	CCNNNNNNNGG	3 cut(s)	69, 150, 207
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 323, 355
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	2 cut(s)	155, 207
AoxI	GGCC	5 cut(s)	21, 95, 103, 228, 304
ApaI	GGGCCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	4 cut(s)	187, 256, 274, 394
AspS9I	GGNCC	6 cut(s)	103, 135, 159, 228, 304, 305
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	325
AvaI	CYCGRG	2 cut(s)	155, 207
AvaII	GGWCC	2 cut(s)	135, 159
BaeGI	GKGCMC	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	253, 391
BanII	GRGCYC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	277
BceAI	ACGGC	4 cut(s)	49, 82, 349, 379
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	308
BfoI	RGCGCY	2 cut(s)	257, 395
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	133, 308
Bme18I	GGWCC	2 cut(s)	135, 159
BmeT110I	CYCGRG	2 cut(s)	155, 207
BmgT120I	GGNCC	6 cut(s)	103, 135, 159, 228, 304, 305
BmiI	GGNNCC	5 cut(s)	104, 160, 255, 306, 393
BmrFI	CCNGG	2 cut(s)	133, 308
BpmI	CTGGAG	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	3 cut(s)	198, 254, 392
BsaJI	CCNNGG	6 cut(s)	63, 79, 98, 114, 131, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 150, 207
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	6 cut(s)	63, 79, 98, 114, 131, 217
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	69, 150, 207
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	308
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	5 cut(s)	23, 97, 105, 230, 306
BshNI	GGYRCC	2 cut(s)	253, 391
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	2 cut(s)	155, 207
BsiSI	CCGG	3 cut(s)	251, 308, 389
BslFI	GGGAC	2 cut(s)	127, 172
BslI	CCNNNNNNNGG	3 cut(s)	69, 150, 207
BsmFI	GGGAC	2 cut(s)	127, 172
BsnI	GGCC	5 cut(s)	23, 97, 105, 230, 306
BsoBI	CYCGRG	2 cut(s)	155, 207
Bsp120I	GGGCCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	127, 376
Bsp1720I	GCTNAGC	1 cut(s)	174
Bsp68I	TCGCGA	1 cut(s)	126
BspANI	GGCC	5 cut(s)	23, 97, 105, 230, 306
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
BspLI	GGNNCC	5 cut(s)	104, 160, 255, 306, 393
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	2 cut(s)	253, 391
BsrBI	CCGCTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	6 cut(s)	63, 79, 98, 114, 131, 217
BssMI	GATC	2 cut(s)	127, 376
BssNI	GRCGYC	3 cut(s)	198, 254, 392
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	133
BstACI	GRCGYC	3 cut(s)	198, 254, 392
BstC8I	GCNNGC	4 cut(s)	180, 189, 270, 320
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	4 cut(s)	79, 98, 114, 217
BstFNI	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
BstH2I	RGCGCY	2 cut(s)	257, 395
BstHHI	GCGC	4 cut(s)	187, 256, 274, 394
BstKTI	GATC	2 cut(s)	130, 379
BstMBI	GATC	2 cut(s)	127, 376
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 184, 188, 197, 262, 265, 271
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	131, 306
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
BstV1I	GCAGC	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	95
BsuRI	GGCC	5 cut(s)	23, 97, 105, 230, 306
BtgI	CCRYGG	4 cut(s)	79, 98, 114, 217
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
BtuMI	TCGCGA	1 cut(s)	126
Cac8I	GCNNGC	4 cut(s)	180, 189, 270, 320
CfoI	GCGC	4 cut(s)	187, 256, 274, 394
Cfr13I	GGNCC	6 cut(s)	103, 135, 159, 228, 304, 305
Cfr42I	CCGCGG	3 cut(s)	82, 117, 220
CseI	GACGC	1 cut(s)	206
CviJI	RGCY	8 cut(s)	23, 97, 105, 154, 230, 292, 306, 364
CviKI_1	RGCY	8 cut(s)	23, 97, 105, 154, 230, 292, 306, 364
DdeI	CTNAG	1 cut(s)	174
DinI	GGCGCC	2 cut(s)	255, 393
DpnI	GATC	2 cut(s)	129, 378
DpnII	GATC	2 cut(s)	127, 376
EaeI	YGGCCR	1 cut(s)	95
EagI	CGGCCG	1 cut(s)	95
EciI	GGCGGA	2 cut(s)	54, 362
EclXI	CGGCCG	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	135, 159
Eco52I	CGGCCG	1 cut(s)	95
Eco88I	CYCGRG	2 cut(s)	155, 207
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	308
EgeI	GGCGCC	2 cut(s)	255, 393
EheI	GGCGCC	2 cut(s)	255, 393
ErhI	CCWWGG	1 cut(s)	63
FaiI	YATR	2 cut(s)	195, 279
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	2 cut(s)	127, 172
FauI	CCCGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	308
GlaI	GCGC	4 cut(s)	186, 255, 273, 393
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	2 cut(s)	257, 395
HaeIII	GGCC	5 cut(s)	23, 97, 105, 230, 306
HapII	CCGG	3 cut(s)	251, 308, 389
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	4 cut(s)	187, 256, 274, 394
Hin1I	GRCGYC	3 cut(s)	198, 254, 392
Hin6I	GCGC	4 cut(s)	185, 254, 272, 392
HinP1I	GCGC	4 cut(s)	185, 254, 272, 392
HinfI	GANTC	4 cut(s)	121, 213, 247, 382
HpaII	CCGG	3 cut(s)	251, 308, 389
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	48, 381, 404
Hpy188III	TCNNGA	3 cut(s)	125, 157, 244
HpyAV	CCTTC	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 184, 188, 197, 262, 265, 271
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	3 cut(s)	198, 254, 392
HspAI	GCGC	4 cut(s)	185, 254, 272, 392
KasI	GGCGCC	2 cut(s)	253, 391
KspI	CCGCGG	3 cut(s)	82, 117, 220
Kzo9I	GATC	2 cut(s)	127, 376
LpnPI	CCDG	8 cut(s)	118, 145, 264, 278, 308, 321, 340, 383
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	129, 378
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	2 cut(s)	127, 376
MboII	GAAGA	5 cut(s)	16, 340, 343, 370, 377
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	1 cut(s)	298
Mly113I	GGCGCC	2 cut(s)	254, 392
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	7 cut(s)	10, 13, 35, 42, 48, 61, 81
MroXI	GAANNNNTTC	1 cut(s)	365
MspA1I	CMGCKG	3 cut(s)	81, 116, 219
MspI	CCGG	3 cut(s)	251, 308, 389
MspR9I	CCNGG	2 cut(s)	133, 308
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	7 cut(s)	26, 81, 116, 126, 187, 219, 272
MwoI	GCNNNNNNNGC	7 cut(s)	179, 184, 188, 197, 262, 265, 271
NarI	GGCGCC	2 cut(s)	254, 392
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	127, 376
NlaIV	GGNNCC	5 cut(s)	104, 160, 255, 306, 393
NruI	TCGCGA	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	4 cut(s)	121, 213, 247, 382
PflFI	GACNNNGTC	1 cut(s)	139
PluTI	GGCGCC	2 cut(s)	257, 395
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	5 cut(s)	104, 160, 255, 306, 393
PspOMI	GGGCCC	1 cut(s)	304
PspPI	GGNCC	6 cut(s)	103, 135, 159, 228, 304, 305
PspPPI	RGGWCCY	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	126
SacII	CCGCGG	3 cut(s)	82, 117, 220
Sau3AI	GATC	2 cut(s)	127, 376
Sau96I	GGNCC	6 cut(s)	103, 135, 159, 228, 304, 305
ScrFI	CCNGG	2 cut(s)	133, 308
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	5 cut(s)	46, 53, 59, 164, 294
SfoI	GGCGCC	2 cut(s)	255, 393
Sfr303I	CCGCGG	3 cut(s)	82, 117, 220
SgrBI	CCGCGG	3 cut(s)	82, 117, 220
SinI	GGWCC	2 cut(s)	135, 159
Sse9I	AATT	1 cut(s)	298
SspDI	GGCGCC	2 cut(s)	253, 391
StyD4I	CCNGG	2 cut(s)	131, 306
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	53, 243
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	4 cut(s)	121, 213, 247, 382
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	17, 350
TspRI	CASTG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	135, 159
XapI	RAATTY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.