Rh6CG327000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014245
Physical Location & Seq
Forward (+)
51362861 .. 51363484
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG327000.1

Sequence Viewer

Length: 624 bp
ATGCACACCTCACTCCACTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCCGGCTAAGGCCTCCAGGGGCGCGATGAGGTCGGCGCACGTCAGAGGCGCGATGAAGAAGAAGGCGGCCCAGGATGGCGGCGAAATGAAGAAGGAGAAGGAGGAGCCCGCGAAAGGCGGCGGCGGAGGTCGGAGGTCGAGGTCGTCCAAGGAGGGGAGTTTCCGTGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGCCGCAGCTCGGGGATTCCGCGGCGTAAGGGCCAAGACGAACTTCGAGAATCCGGCTCCGCCGAAGCAGCACGCGCTCTTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGCGCAAGAACGACCCTGTTCCGGCGCCGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAGGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Protein Analysis

207

Amino Acids

22.7

Weight (kDa)

10.34

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 70 - 114 8.8e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53170
fragaria_vesca FvH4_2g22290
malus_domestica MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica Prupe.8G230600_v2.0.a1
pyrus_communis pycom10g16490
rosa_chinensis RchiOBHm_Chr6g0289271
rosa_laevigata RLG00000012317
rosa_multiflora Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii Rroxscaffold_7G00179380
rosa_rugosa Rorug06G0202400
rosa_samantha Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana Rw6G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AccB1I GGYRCC 2 cut(s) 469, 610
AccII CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
AclWI GGATC 2 cut(s) 26, 254
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 517
AcyI GRCGYC 3 cut(s) 330, 470, 611
AfiI CCNNNNNNNGG 5 cut(s) 161, 201, 282, 339, 466
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 3 cut(s) 62, 117, 263
AjuI GAANNNNNNNTTGG 4 cut(s) 356, 388, 542, 574
AluBI AGCT 2 cut(s) 338, 511
AluI AGCT 2 cut(s) 338, 511
Alw21I GWGCWC 1 cut(s) 432
AlwI GGATC 2 cut(s) 26, 254
Ama87I CYCGRG 2 cut(s) 287, 339
AoxI GGCC 6 cut(s) 57, 114, 227, 235, 360, 523
ApaI GGGCCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 335, 397
ApoI RAATTY 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 8 cut(s) 71, 85, 98, 319, 406, 450, 472, 613
AspS9I GGNCC 8 cut(s) 115, 235, 267, 291, 360, 435, 523, 524
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 496, 544
AvaI CYCGRG 2 cut(s) 287, 339
AvaII GGWCC 3 cut(s) 267, 291, 435
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 2 cut(s) 469, 610
BanII GRGCYC 2 cut(s) 156, 527
Bbv12I GWGCWC 1 cut(s) 432
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 347, 409
BccI CCATC 1 cut(s) 116
BceAI ACGGC 3 cut(s) 214, 568, 598
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 3 cut(s) 64, 119, 265
BcnI CCSGG 1 cut(s) 527
BfoI RGCGCY 2 cut(s) 473, 614
Bme1390I CCNGG 4 cut(s) 64, 119, 265, 527
Bme18I GGWCC 3 cut(s) 267, 291, 435
BmeT110I CYCGRG 2 cut(s) 287, 339
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 8 cut(s) 115, 235, 267, 291, 360, 435, 523, 524
BmiI GGNNCC 9 cut(s) 153, 236, 292, 387, 437, 471, 480, 525, 612
BmrFI CCNGG 4 cut(s) 64, 119, 265, 527
BpmI CTGGAG 2 cut(s) 46, 533
Bpu10I CCTNAGC 2 cut(s) 54, 306
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 3 cut(s) 330, 470, 611
BsaJI CCNNGG 8 cut(s) 63, 117, 195, 211, 230, 246, 263, 349
BsaWI WCCGGW 2 cut(s) 442, 481
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 201, 282, 339, 466
Bse118I RCCGGY 2 cut(s) 49, 472
Bse1I ACTGG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 3 cut(s) 64, 119, 265
BseDI CCNNGG 8 cut(s) 63, 117, 195, 211, 230, 246, 263, 349
BseGI GGATG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 5 cut(s) 161, 201, 282, 339, 466
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 27, 164
BseSI GKGCMC 1 cut(s) 527
BseX3I CGGCCG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 347, 409
Bsh1236I CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
Bsh1285I CGRYCG 1 cut(s) 230
BshFI GGCC 6 cut(s) 59, 116, 229, 237, 362, 525
BshNI GGYRCC 2 cut(s) 469, 610
BsiEI CGRYCG 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 2 cut(s) 287, 339
BsiSI CCGG 8 cut(s) 50, 383, 443, 467, 473, 482, 527, 608
BslFI GGGAC 2 cut(s) 259, 304
BslI CCNNNNNNNGG 5 cut(s) 161, 201, 282, 339, 466
BsmFI GGGAC 2 cut(s) 259, 304
BsnI GGCC 6 cut(s) 59, 116, 229, 237, 362, 525
BsoBI CYCGRG 2 cut(s) 287, 339
Bsp120I GGGCCC 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 156, 432, 527
Bsp143I GATC 4 cut(s) 31, 259, 411, 595
Bsp68I TCGCGA 1 cut(s) 258
BspANI GGCC 6 cut(s) 59, 116, 229, 237, 362, 525
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
BspLI GGNNCC 9 cut(s) 153, 236, 292, 387, 437, 471, 480, 525, 612
BspPI GGATC 2 cut(s) 26, 254
BspT107I GGYRCC 2 cut(s) 469, 610
BsrFI RCCGGY 2 cut(s) 49, 472
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 2 cut(s) 49, 472
BssECI CCNNGG 8 cut(s) 63, 117, 195, 211, 230, 246, 263, 349
BssMI GATC 4 cut(s) 31, 259, 411, 595
BssNI GRCGYC 3 cut(s) 330, 470, 611
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 64, 119, 265
BstACI GRCGYC 3 cut(s) 330, 470, 611
BstC8I GCNNGC 6 cut(s) 51, 156, 321, 402, 474, 539
BstDEI CTNAG 2 cut(s) 54, 306
BstDSI CCRYGG 4 cut(s) 211, 230, 246, 349
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
BstH2I RGCGCY 2 cut(s) 473, 614
BstHHI GCGC 8 cut(s) 71, 85, 98, 319, 406, 450, 472, 613
BstKTI GATC 4 cut(s) 34, 262, 414, 598
BstMBI GATC 4 cut(s) 31, 259, 411, 595
BstMCI CGRYCG 1 cut(s) 230
BstMWI GCNNNNNNNGC 6 cut(s) 311, 320, 329, 397, 403, 476
BstNI CCWGG 3 cut(s) 64, 119, 265
BstSCI CCNGG 4 cut(s) 62, 117, 263, 525
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
BstV1I GCAGC 2 cut(s) 347, 409
BstZI CGGCCG 1 cut(s) 227
BsuRI GGCC 6 cut(s) 59, 116, 229, 237, 362, 525
BtgI CCRYGG 4 cut(s) 211, 230, 246, 349
BtgZI GCGATG 2 cut(s) 86, 113
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 258
Cac8I GCNNGC 6 cut(s) 51, 156, 321, 402, 474, 539
CfoI GCGC 8 cut(s) 71, 85, 98, 319, 406, 450, 472, 613
Cfr10I RCCGGY 2 cut(s) 49, 472
Cfr13I GGNCC 8 cut(s) 115, 235, 267, 291, 360, 435, 523, 524
Cfr42I CCGCGG 2 cut(s) 249, 352
CseI GACGC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 54, 306
DinI GGCGCC 2 cut(s) 471, 612
DpnI GATC 4 cut(s) 33, 261, 413, 597
DpnII GATC 4 cut(s) 31, 259, 411, 595
EaeI YGGCCR 1 cut(s) 227
EagI CGGCCG 1 cut(s) 227
EciI GGCGGA 4 cut(s) 30, 186, 378, 581
EclXI CGGCCG 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 156, 527
Eco47I GGWCC 3 cut(s) 267, 291, 435
Eco52I CGGCCG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 287, 339
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 62, 117, 263
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 156, 527
EgeI GGCGCC 2 cut(s) 471, 612
EheI GGCGCC 2 cut(s) 471, 612
ErhI CCWWGG 1 cut(s) 195
FaiI YATR 2 cut(s) 327, 498
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 2 cut(s) 259, 304
FauI CCCGC 2 cut(s) 163, 284
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 156, 527
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 8 cut(s) 70, 84, 97, 318, 405, 449, 471, 612
GsuI CTGGAG 2 cut(s) 46, 533
HaeII RGCGCY 2 cut(s) 473, 614
HaeIII GGCC 6 cut(s) 59, 116, 229, 237, 362, 525
HapII CCGG 8 cut(s) 50, 383, 443, 467, 473, 482, 527, 608
HgaI GACGC 1 cut(s) 338
HhaI GCGC 8 cut(s) 71, 85, 98, 319, 406, 450, 472, 613
Hin1I GRCGYC 3 cut(s) 330, 470, 611
Hin6I GCGC 8 cut(s) 69, 83, 96, 317, 404, 448, 470, 611
HinP1I GCGC 8 cut(s) 69, 83, 96, 317, 404, 448, 470, 611
HinfI GANTC 4 cut(s) 253, 345, 379, 601
HpaII CCGG 8 cut(s) 50, 383, 443, 467, 473, 482, 527, 608
HphI GGTGA 2 cut(s) 496, 544
Hpy188I TCNGA 5 cut(s) 92, 180, 493, 600, 623
Hpy188III TCNNGA 5 cut(s) 257, 289, 376, 409, 433
HpyAV CCTTC 3 cut(s) 103, 133, 139
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 320, 329, 397, 403, 476
HpyF3I CTNAG 2 cut(s) 54, 306
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 3 cut(s) 330, 470, 611
HspAI GCGC 8 cut(s) 69, 83, 96, 317, 404, 448, 470, 611
KasI GGCGCC 2 cut(s) 469, 610
KroI GCCGGC 2 cut(s) 49, 472
KroNI GCCGGC 2 cut(s) 51, 474
KspI CCGCGG 2 cut(s) 249, 352
Kzo9I GATC 4 cut(s) 31, 259, 411, 595
LmnI GCTCC 3 cut(s) 151, 391, 484
Lsp1109I GCAGC 2 cut(s) 347, 409
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 503
MalI GATC 4 cut(s) 33, 261, 413, 597
MboI GATC 4 cut(s) 31, 259, 411, 595
MboII GAAGA 7 cut(s) 115, 118, 148, 559, 562, 589, 596
MhlI GDGCHC 3 cut(s) 156, 432, 527
MluCI AATT 1 cut(s) 517
Mly113I GGCGCC 2 cut(s) 470, 611
MmeI TCCRAC 2 cut(s) 158, 471
MreI CGCCGGCG 1 cut(s) 472
MroNI GCCGGC 2 cut(s) 49, 472
MroXI GAANNNNTTC 1 cut(s) 584
MspA1I CMGCKG 2 cut(s) 248, 351
MspI CCGG 8 cut(s) 50, 383, 443, 467, 473, 482, 527, 608
MspR9I CCNGG 4 cut(s) 64, 119, 265, 527
MvaI CCWGG 3 cut(s) 64, 119, 265
MvnI CGCG 8 cut(s) 71, 98, 158, 248, 258, 319, 351, 404
MwoI GCNNNNNNNGC 6 cut(s) 311, 320, 329, 397, 403, 476
NaeI GCCGGC 2 cut(s) 51, 474
NarI GGCGCC 2 cut(s) 470, 611
NciI CCSGG 1 cut(s) 527
NdeII GATC 4 cut(s) 31, 259, 411, 595
NgoMIV GCCGGC 2 cut(s) 49, 472
NlaIV GGNNCC 9 cut(s) 153, 236, 292, 387, 437, 471, 480, 525, 612
NruI TCGCGA 1 cut(s) 258
NsbI TGCGCA 1 cut(s) 449
PceI AGGCCT 1 cut(s) 59
PdiI GCCGGC 2 cut(s) 51, 474
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 253, 345, 379, 601
PflFI GACNNNGTC 1 cut(s) 271
PluTI GGCGCC 2 cut(s) 473, 614
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 62, 117, 263
PspGI CCWGG 3 cut(s) 62, 117, 263
PspN4I GGNNCC 9 cut(s) 153, 236, 292, 387, 437, 471, 480, 525, 612
PspOMI GGGCCC 1 cut(s) 523
PspPI GGNCC 8 cut(s) 115, 235, 267, 291, 360, 435, 523, 524
PspPPI RGGWCCY 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 271
RruI TCGCGA 1 cut(s) 258
SacII CCGCGG 2 cut(s) 249, 352
Sau3AI GATC 4 cut(s) 31, 259, 411, 595
Sau96I GGNCC 8 cut(s) 115, 235, 267, 291, 360, 435, 523, 524
ScrFI CCNGG 4 cut(s) 64, 119, 265, 527
SduI GDGCHC 3 cut(s) 156, 432, 527
SfoI GGCGCC 2 cut(s) 471, 612
Sfr303I CCGCGG 2 cut(s) 249, 352
SgrAI CRCCGGYG 1 cut(s) 472
SgrBI CCGCGG 2 cut(s) 249, 352
SinI GGWCC 3 cut(s) 267, 291, 435
Sse9I AATT 1 cut(s) 517
SseBI AGGCCT 1 cut(s) 59
SspDI GGCGCC 2 cut(s) 469, 610
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 4 cut(s) 62, 117, 263, 525
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 185, 375
TasI AATT 1 cut(s) 517
TfiI GAWTC 4 cut(s) 253, 345, 379, 601
TscAI CASTG 1 cut(s) 307
TseI GCWGC 2 cut(s) 335, 397
TspDTI ATGAA 3 cut(s) 116, 149, 569
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 267, 291, 435
XapI RAATTY 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.