Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

33398720 .. 33399268

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1204300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTACTGTAGACGCGCTCCACCTCCGCGACACCACACTCTCCCTCGCCGTCGAACCGCCTTCGCCTCCGCCCCGCAAGCTTCGAGCTCAGCCCAAGCACGCTTCGCCCGGTAAAGGCGGCGGGGGAAAGGATCCGCATTTTAGAGGCGTGCGGAAGCGGCCGTGGGGACGGTTCGCCGCCGAGATTCGCGATCCGTGGAAGAAGACTCGGAAGTGGCTCGGCACCTACGACACCGCCGAGGAGGCGGCGCGTGCGTATGACGAGGCCGCGCTTAGCCTCCGCGGTTCCAAGGCCAAGACCAACTTTGGTAATCTCGCTCTTGCCCCGCCTCACTCGCTTCTCGTCGGCGGCGGCTATGAGATGTTCTGGCCTCCACCGCGGATGTACTTTATGACCAGTGCTCCGGCGGTGGCGCCGGTTAGGTCGGAGTATACAGGGTACAAGCTTGAGAATGTGGACGTGGTGGTGGGCGAGGAGGAGAAGAAGATGCGGAAGGAGAAGAAGCCGTTGTTATTCGATCTGAATCTGCCGGCGCCGCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

183

Amino Acids

20.25

Weight (kDa)

9.83

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 96	5.9e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	224, 415, 535
AccI	GTMKAC	3 cut(s)	5, 12, 434
AccII	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
AclWI	GGATC	3 cut(s)	128, 141, 188
AcoI	YGGCCR	1 cut(s)	161
AcyI	GRCGYC	2 cut(s)	416, 536
AfaI	GTAC	2 cut(s)	389, 443
AfiI	CCNNNNNNNGG	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	463
AluBI	AGCT	3 cut(s)	82, 89, 448
AluI	AGCT	3 cut(s)	82, 89, 448
Alw21I	GWGCWC	2 cut(s)	91, 406
AlwI	GGATC	3 cut(s)	128, 141, 188
AoxI	GGCC	4 cut(s)	161, 267, 294, 371
AspLEI	GCGC	5 cut(s)	19, 253, 274, 418, 538
AsuC2I	CCSGG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	3 cut(s)	224, 415, 535
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	91, 406
BceAI	ACGGC	3 cut(s)	35, 148, 493
BcnI	CCSGG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	419, 539
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	8 cut(s)	121, 161, 180, 249, 270, 352, 355, 539
BlpI	GCTNAGC	2 cut(s)	90, 275
BlsI	GCNGC	8 cut(s)	122, 162, 181, 250, 271, 353, 356, 540
Bme1390I	CCNGG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	5 cut(s)	135, 226, 289, 417, 537
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	212
Bpu1102I	GCTNAGC	2 cut(s)	90, 275
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	2 cut(s)	416, 536
BsaJI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	2 cut(s)	418, 532
Bse1I	ACTGG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 380
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	3 cut(s)	257, 491, 494
BseX3I	CGGCCG	1 cut(s)	161
Bsh1236I	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	4 cut(s)	163, 269, 296, 373
BshNI	GGYRCC	3 cut(s)	224, 415, 535
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	91, 406
BsiSI	CCGG	4 cut(s)	111, 407, 419, 533
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	163, 269, 296, 373
Bsp1286I	GDGCHC	2 cut(s)	91, 406
Bsp143I	GATC	3 cut(s)	133, 193, 520
Bsp1720I	GCTNAGC	2 cut(s)	90, 275
Bsp68I	TCGCGA	1 cut(s)	192
BspANI	GGCC	4 cut(s)	163, 269, 296, 373
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
BspLI	GGNNCC	5 cut(s)	135, 226, 289, 417, 537
BspPI	GGATC	3 cut(s)	128, 141, 188
BspT107I	GGYRCC	3 cut(s)	224, 415, 535
BsrFI	RCCGGY	2 cut(s)	418, 532
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	2 cut(s)	418, 532
BssECI	CCNNGG	6 cut(s)	164, 197, 240, 283, 291, 380
BssMI	GATC	3 cut(s)	133, 193, 520
BssNAI	GTATAC	1 cut(s)	435
BssNI	GRCGYC	2 cut(s)	416, 536
BssT1I	CCWWGG	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	10, 174
BstACI	GRCGYC	2 cut(s)	416, 536
BstC8I	GCNNGC	5 cut(s)	80, 102, 152, 255, 534
BstDEI	CTNAG	2 cut(s)	90, 275
BstDSI	CCRYGG	4 cut(s)	164, 197, 283, 380
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
BstH2I	RGCGCY	2 cut(s)	419, 539
BstHHI	GCGC	5 cut(s)	19, 253, 274, 418, 538
BstKTI	GATC	3 cut(s)	136, 196, 523
BstMBI	GATC	3 cut(s)	133, 193, 520
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 106, 160, 245, 254, 337, 379, 538
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	435
BstZI	CGGCCG	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	163, 269, 296, 373
BtgI	CCRYGG	4 cut(s)	164, 197, 283, 380
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	406
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	5 cut(s)	80, 102, 152, 255, 534
CfoI	GCGC	5 cut(s)	19, 253, 274, 418, 538
Cfr10I	RCCGGY	2 cut(s)	418, 532
Cfr42I	CCGCGG	2 cut(s)	286, 383
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	388, 442
CviQI	GTAC	2 cut(s)	388, 442
DdeI	CTNAG	2 cut(s)	90, 275
DinI	GGCGCC	2 cut(s)	417, 537
DpnI	GATC	3 cut(s)	135, 195, 522
DpnII	GATC	3 cut(s)	133, 193, 520
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	91
EgeI	GGCGCC	2 cut(s)	417, 537
EheI	GGCGCC	2 cut(s)	417, 537
ErhI	CCWWGG	1 cut(s)	291
FaiI	YATR	4 cut(s)	261, 360, 395, 435
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	3 cut(s)	83, 116, 336
FblI	GTMKAC	3 cut(s)	5, 12, 434
Fnu4HI	GCNGC	8 cut(s)	121, 161, 180, 249, 270, 352, 355, 539
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	8 cut(s)	121, 161, 180, 249, 270, 352, 355, 539
GlaI	GCGC	5 cut(s)	18, 252, 273, 417, 537
GluI	GCNGC	8 cut(s)	121, 161, 180, 249, 270, 352, 355, 539
HaeII	RGCGCY	2 cut(s)	419, 539
HaeIII	GGCC	4 cut(s)	163, 269, 296, 373
HapII	CCGG	4 cut(s)	111, 407, 419, 533
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	5 cut(s)	19, 253, 274, 418, 538
Hin1I	GRCGYC	2 cut(s)	416, 536
Hin6I	GCGC	5 cut(s)	17, 251, 272, 416, 536
HinP1I	GCGC	5 cut(s)	17, 251, 272, 416, 536
HindIII	AAGCTT	2 cut(s)	80, 446
HinfI	GANTC	3 cut(s)	187, 208, 526
HpaII	CCGG	4 cut(s)	111, 407, 419, 533
Hpy166II	GTNNAC	4 cut(s)	6, 13, 435, 460
Hpy188I	TCNGA	4 cut(s)	213, 430, 525, 548
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	4 cut(s)	6, 13, 435, 460
Hpy99I	CGWCG	2 cut(s)	56, 350
HpyAV	CCTTC	2 cut(s)	72, 490
HpyCH4III	ACNGT	2 cut(s)	10, 174
HpyCH4IV	ACGT	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 106, 160, 245, 254, 337, 379, 538
HpyF3I	CTNAG	2 cut(s)	90, 275
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	416, 536
HspAI	GCGC	5 cut(s)	17, 251, 272, 416, 536
KasI	GGCGCC	2 cut(s)	415, 535
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
KspI	CCGCGG	2 cut(s)	286, 383
Kzo9I	GATC	3 cut(s)	133, 193, 520
LmnI	GCTCC	2 cut(s)	24, 409
LpnPI	CCDG	6 cut(s)	124, 355, 412, 420, 423, 432
LweI	GCATC	1 cut(s)	480
MaeII	ACGT	1 cut(s)	462
MalI	GATC	3 cut(s)	135, 195, 522
MboI	GATC	3 cut(s)	133, 193, 520
MboII	GAAGA	5 cut(s)	214, 217, 496, 499, 514
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	91, 406
Mly113I	GGCGCC	2 cut(s)	416, 536
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	408
MroNI	GCCGGC	1 cut(s)	532
MspA1I	CMGCKG	3 cut(s)	285, 382, 541
MspI	CCGG	4 cut(s)	111, 407, 419, 533
MspR9I	CCNGG	1 cut(s)	111
MvnI	CGCG	7 cut(s)	17, 30, 192, 253, 272, 285, 382
MwoI	GCNNNNNNNGC	8 cut(s)	79, 106, 160, 245, 254, 337, 379, 538
NaeI	GCCGGC	1 cut(s)	534
NarI	GGCGCC	2 cut(s)	416, 536
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	133, 193, 520
NgoMIV	GCCGGC	1 cut(s)	532
NlaIV	GGNNCC	5 cut(s)	135, 226, 289, 417, 537
NmeAIII	GCCGAG	3 cut(s)	201, 208, 265
NruI	TCGCGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 237
PdiI	GCCGGC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	187, 526
PkrI	GCNGC	8 cut(s)	122, 162, 181, 250, 271, 353, 356, 540
PleI	GAGTC	1 cut(s)	202
PluTI	GGCGCC	2 cut(s)	419, 539
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	91
PspN4I	GGNNCC	5 cut(s)	135, 226, 289, 417, 537
PsuI	RGATCY	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	2 cut(s)	389, 443
RsaNI	GTAC	2 cut(s)	388, 442
SacI	GAGCTC	1 cut(s)	91
SacII	CCGCGG	2 cut(s)	286, 383
SatI	GCNGC	8 cut(s)	121, 161, 180, 249, 270, 352, 355, 539
Sau3AI	GATC	3 cut(s)	133, 193, 520
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	91, 406
SetI	ASST	7 cut(s)	27, 84, 91, 230, 428, 450, 465
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	2 cut(s)	417, 537
Sfr303I	CCGCGG	2 cut(s)	286, 383
SgrBI	CCGCGG	2 cut(s)	286, 383
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SspDI	GGCGCC	2 cut(s)	415, 535
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	10, 174
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	54, 85, 519
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	8 cut(s)	123, 163, 182, 251, 272, 354, 357, 541
TfiI	GAWTC	2 cut(s)	187, 526
TscAI	CASTG	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	406
XmiI	GTMKAC	3 cut(s)	5, 12, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.