Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

20570022 .. 20570957

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTGTAGACGCGCTCCACCTTCGCAAGACCTCACTCTCCCTCGCTGTCGAACCGCCATCACCACCGCCACGTCAGCCTCCGGCTCAGCCCAAGCACTCGGCTCACGTTAGAGGCGGCGGAGCCAAGGAGGCTCATTTTAGAGGCGTGCGCAAAAGGCCGTGGGGCCGATTCGCCGCTGAGATTCGCGATCCGTGGAAGAAGACTCGGAAATGGCTCGGCACCTTCGATACCGCCGAGGAGGCGGCTCTTGCGTACGACGAAGCCGCGCGTAGCCTCCGTGGTCCGAAAGCCAAGACTAACTTCGGAGCTCCGGCTTCAGCTTTGCCTCACACGCTTGTTATCGGCGGTGGATCCGAGATTTTCTGGAGTCCGCCGCCGATGTACTTCATGGGCGGAGCTCCGTCGGGGGCTCCGGTGAGGTCGGAGTACAAGGGGTACAAGCTGGAGAATGTGGACCTAGTGGTGAGCGAGCAGGAGAAGAAGATGAGGAAAGAGAAGAAACCGTTCTTGTTCGATCTGAATCTGCCGGCGCCGCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

182

Amino Acids

19.95

Weight (kDa)

9.99

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	152
AccB1I	GGYRCC	2 cut(s)	221, 532
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	4 cut(s)	14, 189, 269, 271
AclWI	GGATC	3 cut(s)	185, 348, 361
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	533
AfaI	GTAC	4 cut(s)	257, 386, 431, 440
AjiI	CACGTC	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	4 cut(s)	311, 323, 401, 445
AluI	AGCT	4 cut(s)	311, 323, 401, 445
Alw21I	GWGCWC	2 cut(s)	313, 403
AlwI	GGATC	3 cut(s)	185, 348, 361
AoxI	GGCC	2 cut(s)	158, 166
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	4 cut(s)	16, 153, 271, 535
AspS9I	GGNCC	3 cut(s)	166, 284, 457
AsuHPI	GGTGA	3 cut(s)	54, 430, 478
AvaII	GGWCC	2 cut(s)	284, 457
BamHI	GGATCC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	221, 532
BanII	GRGCYC	3 cut(s)	313, 403, 415
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	313, 403
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	536
BglI	GCCNNNNNGGC	2 cut(s)	131, 242
BisI	GCNGC	6 cut(s)	118, 177, 246, 267, 377, 536
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	6 cut(s)	119, 178, 247, 268, 378, 537
Bme18I	GGWCC	2 cut(s)	284, 457
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	166, 284, 457
BmiI	GGNNCC	6 cut(s)	124, 167, 223, 355, 414, 534
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	2 cut(s)	388, 467
Bpu1102I	GCTNAGC	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	5 cut(s)	126, 161, 194, 237, 280
BsaWI	WCCGGW	1 cut(s)	415
Bse118I	RCCGGY	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	5 cut(s)	126, 161, 194, 237, 280
BseJI	GATNNNNATC	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	101, 171
BseRI	GAGGAG	1 cut(s)	254
Bsh1236I	CGCG	4 cut(s)	14, 189, 269, 271
BshFI	GGCC	2 cut(s)	160, 168
BshNI	GGYRCC	2 cut(s)	221, 532
BsiHKAI	GWGCWC	2 cut(s)	313, 403
BsiSI	CCGG	4 cut(s)	83, 314, 416, 530
BsiWI	CGTACG	1 cut(s)	255
BsnI	GGCC	2 cut(s)	160, 168
Bsp1286I	GDGCHC	3 cut(s)	313, 403, 415
Bsp143I	GATC	3 cut(s)	190, 353, 517
Bsp1720I	GCTNAGC	1 cut(s)	87
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	2 cut(s)	160, 168
BspCNI	CTCAG	2 cut(s)	100, 172
BspFNI	CGCG	4 cut(s)	14, 189, 269, 271
BspLI	GGNNCC	6 cut(s)	124, 167, 223, 355, 414, 534
BspPI	GGATC	3 cut(s)	185, 348, 361
BspT107I	GGYRCC	2 cut(s)	221, 532
BsrFI	RCCGGY	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	5 cut(s)	126, 161, 194, 237, 280
BssMI	GATC	3 cut(s)	190, 353, 517
BssNI	GRCGYC	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	149, 473, 531
BstDEI	CTNAG	2 cut(s)	87, 180
BstDSI	CCRYGG	3 cut(s)	161, 194, 280
BstFNI	CGCG	4 cut(s)	14, 189, 269, 271
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	4 cut(s)	16, 153, 271, 535
BstKTI	GATC	3 cut(s)	193, 356, 520
BstMBI	GATC	3 cut(s)	190, 353, 517
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 76, 131, 157, 242, 251, 334, 535
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	4 cut(s)	14, 189, 269, 271
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	160, 168
BtgI	CCRYGG	3 cut(s)	161, 194, 280
BtrI	CACGTC	1 cut(s)	74
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	149, 473, 531
CfoI	GCGC	4 cut(s)	16, 153, 271, 535
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	166, 284, 457
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	256, 385, 430, 439
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	4 cut(s)	256, 385, 430, 439
DdeI	CTNAG	2 cut(s)	87, 180
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	3 cut(s)	192, 355, 519
DpnII	GATC	3 cut(s)	190, 353, 517
EciI	GGCGGA	3 cut(s)	135, 363, 411
Ecl136II	GAGCTC	2 cut(s)	311, 401
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	3 cut(s)	313, 403, 415
Eco47I	GGWCC	2 cut(s)	284, 457
Eco53kI	GAGCTC	2 cut(s)	311, 401
Eco57I	CTGAAG	1 cut(s)	303
EcoICRI	GAGCTC	2 cut(s)	311, 401
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	3 cut(s)	313, 403, 415
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	394
FaiI	YATR	1 cut(s)	392
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	118, 177, 246, 267, 377, 536
FriOI	GRGCYC	3 cut(s)	313, 403, 415
Fsp4HI	GCNGC	6 cut(s)	118, 177, 246, 267, 377, 536
FspBI	CTAG	1 cut(s)	461
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	4 cut(s)	15, 152, 270, 534
GluI	GCNGC	6 cut(s)	118, 177, 246, 267, 377, 536
GsuI	CTGGAG	2 cut(s)	388, 467
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	160, 168
HapII	CCGG	4 cut(s)	83, 314, 416, 530
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	4 cut(s)	16, 153, 271, 535
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	4 cut(s)	14, 151, 269, 533
HinP1I	GCGC	4 cut(s)	14, 151, 269, 533
HinfI	GANTC	5 cut(s)	171, 184, 205, 370, 523
HpaII	CCGG	4 cut(s)	83, 314, 416, 530
HphI	GGTGA	3 cut(s)	54, 430, 478
Hpy166II	GTNNAC	2 cut(s)	10, 457
Hpy188I	TCNGA	7 cut(s)	210, 288, 308, 358, 427, 522, 545
Hpy188III	TCNNGA	2 cut(s)	188, 367
Hpy8I	GTNNAC	2 cut(s)	10, 457
Hpy99I	CGWCG	2 cut(s)	263, 409
HpyAV	CCTTC	2 cut(s)	32, 235
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	2 cut(s)	73, 108
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 76, 131, 157, 242, 251, 334, 535
HpyF3I	CTNAG	2 cut(s)	87, 180
HpySE526I	ACGT	2 cut(s)	73, 108
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	4 cut(s)	14, 151, 269, 533
KasI	GGCGCC	1 cut(s)	532
KroI	GCCGGC	1 cut(s)	529
KroNI	GCCGGC	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	190, 353, 517
LmnI	GCTCC	7 cut(s)	21, 122, 308, 316, 398, 406, 418
LpnPI	CCDG	6 cut(s)	96, 327, 352, 429, 431, 461
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	73, 108
MalI	GATC	3 cut(s)	192, 355, 519
MboI	GATC	3 cut(s)	190, 353, 517
MboII	GAAGA	5 cut(s)	211, 214, 493, 496, 511
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	3 cut(s)	313, 403, 415
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	199, 379
MmeI	TCCRAC	1 cut(s)	405
MroNI	GCCGGC	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	506
MspA1I	CMGCKG	2 cut(s)	179, 538
MspI	CCGG	4 cut(s)	83, 314, 416, 530
MvnI	CGCG	4 cut(s)	14, 189, 269, 271
MwoI	GCNNNNNNNGC	8 cut(s)	11, 76, 131, 157, 242, 251, 334, 535
NaeI	GCCGGC	1 cut(s)	531
NarI	GGCGCC	1 cut(s)	533
NdeII	GATC	3 cut(s)	190, 353, 517
NgoMIV	GCCGGC	1 cut(s)	529
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	6 cut(s)	124, 167, 223, 355, 414, 534
NmeAIII	GCCGAG	3 cut(s)	80, 198, 262
NruI	TCGCGA	1 cut(s)	189
NsbI	TGCGCA	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 234
PdiI	GCCGGC	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	171, 184, 523
Pfl23II	CGTACG	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	119, 178, 247, 268, 378, 537
PleI	GAGTC	2 cut(s)	199, 378
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	2 cut(s)	199, 378
Psp124BI	GAGCTC	2 cut(s)	313, 403
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	6 cut(s)	124, 167, 223, 355, 414, 534
PspPI	GGNCC	3 cut(s)	166, 284, 457
PsuI	RGATCY	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	4 cut(s)	257, 386, 431, 440
RsaNI	GTAC	4 cut(s)	256, 385, 430, 439
SacI	GAGCTC	2 cut(s)	313, 403
SatI	GCNGC	6 cut(s)	118, 177, 246, 267, 377, 536
Sau3AI	GATC	3 cut(s)	190, 353, 517
Sau96I	GGNCC	3 cut(s)	166, 284, 457
SchI	GAGTC	2 cut(s)	199, 379
SduI	GDGCHC	3 cut(s)	313, 403, 415
SfcI	CTRYAG	1 cut(s)	6
SfoI	GGCGCC	1 cut(s)	534
SinI	GGWCC	2 cut(s)	284, 457
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	2 cut(s)	313, 403
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	2 cut(s)	76, 111
TaqI	TCGA	3 cut(s)	51, 228, 516
TatI	WGTACW	2 cut(s)	384, 429
TauI	GCSGC	6 cut(s)	120, 179, 248, 269, 379, 538
TfiI	GAWTC	3 cut(s)	171, 184, 523
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	3 cut(s)	183, 269, 393
VpaK11BI	GGWCC	2 cut(s)	284, 457
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.