Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

32462430 .. 32463032

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0202400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTTGACGAGGATTGGCTGGCTGTTATGAAGGAGAAGAAGTGGCTTAAGACTCTTCAAGGTTATAATGCTCCCAAGGGATCTATTCTCTTGCAATCTGCAATAGAGGCAGAAACCTGTTTGAAAATTACAAACCTTCCCGTTGTTGATGAAGCATTCTATGGAGCGAATGTGACTTTGACCGCAAATCTGTCTTCCTTGACCAGTGATTGTGGTTTGTTGATTCTTAAATGCATCAAATGTTTGGGATCTGAAACTTCTGATTTGATTAAGAGGATTACATGTGAACCTTGGATAAAGACAGCTTTTGGTTTAAGATATCCTTATGAAACTATTCATCCTGATCCTCAATGGGGTTCTTTGCTGAATGTTCTTCAGATGCCTGCAATTGATGAAATGTATTACAAGAATGAAATTAGGCATTTCACTGAAGAATTGAAAGCAGTGGGTGTGGTTGATAATGCCACAGCAACTGAGATGATTGCTGCTCAGTTCAGTTCTCTACTGTCTTCTTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

173

Amino Acids

19.25

Weight (kDa)

4.93

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	3 cut(s)	88, 256, 338
AcuI	CTGAAG	2 cut(s)	359, 450
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	59, 124, 439
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AlwI	GGATC	3 cut(s)	88, 256, 338
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	333
BbsI	GAAGAC	2 cut(s)	186, 501
BbvI	GCAGC	1 cut(s)	472
BfaI	CTAG	1 cut(s)	520
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmsI	GCATC	2 cut(s)	243, 369
BpiI	GAAGAC	2 cut(s)	186, 501
BsaJI	CCNNGG	2 cut(s)	75, 290
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	75, 290
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	465, 503
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	80, 248, 343
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	466, 502
BspPI	GGATC	3 cut(s)	88, 256, 338
BspTI	CTTAAG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	75, 290
BssMI	GATC	3 cut(s)	80, 248, 343
BssT1I	CCWWGG	2 cut(s)	75, 290
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	21, 384
BstDEI	CTNAG	2 cut(s)	474, 489
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	83, 251, 346
BstMBI	GATC	3 cut(s)	80, 248, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	2 cut(s)	186, 501
BstX2I	RGATCY	2 cut(s)	80, 248
BstYI	RGATCY	2 cut(s)	80, 248
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	211, 426, 450
Cac8I	GCNNGC	2 cut(s)	21, 384
CaiI	CAGNNNCTG	1 cut(s)	473
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	4 cut(s)	19, 23, 46, 305
CviKI_1	RGCY	4 cut(s)	19, 23, 46, 305
DdeI	CTNAG	2 cut(s)	474, 489
DpnI	GATC	3 cut(s)	82, 250, 345
DpnII	GATC	3 cut(s)	80, 248, 343
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	75, 290
Eco32I	GATATC	1 cut(s)	320
Eco57I	CTGAAG	2 cut(s)	359, 450
EcoRV	GATATC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	75, 290
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	2 cut(s)	75, 290
FaeI	CATG	1 cut(s)	285
FaiI	YATR	5 cut(s)	29, 66, 162, 283, 327
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	520
GluI	GCNGC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	52, 223
Hpy166II	GTNNAC	2 cut(s)	7, 287
Hpy188I	TCNGA	3 cut(s)	253, 262, 378
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	7, 287
HpyAV	CCTTC	2 cut(s)	25, 146
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4V	TGCA	4 cut(s)	94, 101, 234, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	474, 489
Hsp92II	CATG	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	80, 248, 343
LmnI	GCTCC	2 cut(s)	76, 164
LpnPI	CCDG	5 cut(s)	5, 130, 217, 354, 396
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	243, 369
MaeI	CTAG	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	82, 250, 345
MboI	GATC	3 cut(s)	80, 248, 343
MboII	GAAGA	7 cut(s)	47, 49, 186, 365, 443, 501, 504
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	80, 248
MluCI	AATT	4 cut(s)	126, 387, 414, 434
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	4, 100, 267, 357
Mph1103I	ATGCAT	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	48, 228, 270, 314
MspCI	CTTAAG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	80, 248, 343
NlaIII	CATG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	236
NspI	RCATGY	1 cut(s)	285
PciI	ACATGT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	80, 248
SaqAI	TTAA	4 cut(s)	48, 228, 270, 314
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	80, 248, 343
SchI	GAGTC	1 cut(s)	46
SetI	ASST	5 cut(s)	64, 119, 138, 292, 307
SfaNI	GCATC	2 cut(s)	243, 369
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	4 cut(s)	126, 387, 414, 434
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	520
StyI	CCWWGG	2 cut(s)	75, 290
TaaI	ACNGT	1 cut(s)	507
TasI	AATT	4 cut(s)	126, 387, 414, 434
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	4 cut(s)	48, 228, 270, 314
Tru9I	TTAA	4 cut(s)	48, 228, 270, 314
TscAI	CASTG	3 cut(s)	211, 433, 450
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	6 cut(s)	44, 165, 326, 342, 408, 426
TspRI	CASTG	3 cut(s)	211, 433, 450
Vha464I	CTTAAG	1 cut(s)	47
XceI	RCATGY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.