Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

51388185 .. 51389071

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGCTCGACGCAATGCACACCTCACTCCCCTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCCGGCTAAGGCCTCCAGGGGCGCGATGAAGAAGAAGGCGGCGCAGGATGGCTGCGAAATGAAGAAGGAGAAGGAGGAGGCCGCGAAAGGCGGCGGCGGAGGTCGGAGGACAAGGTCGTCCAAGGAGGGGCGTTTCCGCGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAGGCGGCGCGTGCCTATGACGCCGCCGCGCGGGGATTCCGCGGCGTAAGGGCCAAGACGAACTTCGAGAATCCGGCGACGCCGAAGCAGCACGCGCTCGTGATCGGGCGCAAGGAAGTGCTCTGGACCCCCCCGGTGCGCAAGAACGACTCTGTTCCGGCGACGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAAGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAAGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

203

Amino Acids

22.36

Weight (kDa)

10.18

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	65 - 110	6.3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
Acc16I	TGCGCA	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	598
AclWI	GGATC	2 cut(s)	41, 242
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	3 cut(s)	318, 377, 599
AfiI	CCNNNNNNNGG	3 cut(s)	189, 270, 327
AjnI	CCWGG	2 cut(s)	77, 251
AjuI	GAANNNNNNNTTGG	4 cut(s)	344, 376, 530, 562
AluBI	AGCT	1 cut(s)	499
AluI	AGCT	1 cut(s)	499
Alw21I	GWGCWC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	41, 242
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	6 cut(s)	72, 141, 215, 223, 348, 511
ApaI	GGGCCC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	114, 385
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	9 cut(s)	7, 86, 106, 307, 328, 394, 408, 438, 601
AspS9I	GGNCC	7 cut(s)	223, 255, 279, 348, 423, 511, 512
AsuC2I	CCSGG	2 cut(s)	431, 515
AsuHPI	GGTGA	2 cut(s)	484, 532
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	3 cut(s)	255, 279, 423
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	515
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	101, 397
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	4 cut(s)	202, 477, 556, 586
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	79, 253
BcnI	CCSGG	2 cut(s)	431, 515
BfoI	RGCGCY	2 cut(s)	8, 602
Bme1390I	CCNGG	4 cut(s)	79, 253, 431, 515
Bme18I	GGWCC	3 cut(s)	255, 279, 423
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	7 cut(s)	223, 255, 279, 348, 423, 511, 512
BmiI	GGNNCC	6 cut(s)	224, 280, 425, 468, 513, 600
BmrFI	CCNGG	4 cut(s)	79, 253, 431, 515
BpmI	CTGGAG	2 cut(s)	61, 521
Bpu10I	CCTNAGC	2 cut(s)	69, 294
BpuMI	CCSGG	2 cut(s)	431, 515
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	3 cut(s)	318, 377, 599
BsaJI	CCNNGG	8 cut(s)	78, 183, 199, 218, 234, 251, 337, 429
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 270, 327
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	79, 253
BseDI	CCNNGG	8 cut(s)	78, 183, 199, 218, 234, 251, 337, 429
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	3 cut(s)	189, 270, 327
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	3 cut(s)	42, 152, 311
BseSI	GKGCMC	1 cut(s)	515
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	101, 397
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	6 cut(s)	74, 143, 217, 225, 350, 513
BshNI	GGYRCC	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	7 cut(s)	65, 371, 431, 455, 470, 515, 596
BslFI	GGGAC	2 cut(s)	247, 292
BslI	CCNNNNNNNGG	3 cut(s)	189, 270, 327
BsmFI	GGGAC	2 cut(s)	247, 292
BsnI	GGCC	6 cut(s)	74, 143, 217, 225, 350, 513
BsoBI	CYCGRG	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	420, 515
Bsp143I	GATC	4 cut(s)	46, 247, 399, 583
Bsp68I	TCGCGA	1 cut(s)	246
BspANI	GGCC	6 cut(s)	74, 143, 217, 225, 350, 513
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	6 cut(s)	224, 280, 425, 468, 513, 600
BspPI	GGATC	2 cut(s)	41, 242
BspT107I	GGYRCC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	8 cut(s)	78, 183, 199, 218, 234, 251, 337, 429
BssMI	GATC	4 cut(s)	46, 247, 399, 583
BssNI	GRCGYC	3 cut(s)	318, 377, 599
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	79, 253
BstACI	GRCGYC	3 cut(s)	318, 377, 599
BstC8I	GCNNGC	4 cut(s)	66, 309, 390, 527
BstDEI	CTNAG	2 cut(s)	69, 294
BstDSI	CCRYGG	4 cut(s)	199, 218, 234, 337
BstF5I	GGATG	1 cut(s)	115
BstH2I	RGCGCY	2 cut(s)	8, 602
BstHHI	GCGC	9 cut(s)	7, 86, 106, 307, 328, 394, 408, 438, 601
BstKTI	GATC	4 cut(s)	49, 250, 402, 586
BstMBI	GATC	4 cut(s)	46, 247, 399, 583
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 299, 308, 317, 385, 391, 464
BstNI	CCWGG	2 cut(s)	79, 253
BstSCI	CCNGG	4 cut(s)	77, 251, 429, 513
BstSLI	GKGCMC	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	101, 397
BstZI	CGGCCG	1 cut(s)	215
BsuRI	GGCC	6 cut(s)	74, 143, 217, 225, 350, 513
BtgI	CCRYGG	4 cut(s)	199, 218, 234, 337
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	4 cut(s)	66, 309, 390, 527
CfoI	GCGC	9 cut(s)	7, 86, 106, 307, 328, 394, 408, 438, 601
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	7 cut(s)	223, 255, 279, 348, 423, 511, 512
Cfr42I	CCGCGG	3 cut(s)	202, 237, 340
CseI	GACGC	3 cut(s)	20, 326, 385
DdeI	CTNAG	2 cut(s)	69, 294
DinI	GGCGCC	1 cut(s)	600
DpnI	GATC	4 cut(s)	48, 249, 401, 585
DpnII	GATC	4 cut(s)	46, 247, 399, 583
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	215
EagI	CGGCCG	1 cut(s)	215
EciI	GGCGGA	3 cut(s)	45, 174, 569
EclXI	CGGCCG	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	515
Eco47I	GGWCC	3 cut(s)	255, 279, 423
Eco52I	CGGCCG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	77, 251
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	515
EgeI	GGCGCC	1 cut(s)	600
EheI	GGCGCC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	183
FaiI	YATR	2 cut(s)	315, 486
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	247, 292
FauI	CCCGC	2 cut(s)	272, 321
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	515
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	9 cut(s)	6, 85, 105, 306, 327, 393, 407, 437, 600
GsuI	CTGGAG	2 cut(s)	61, 521
HaeII	RGCGCY	2 cut(s)	8, 602
HaeIII	GGCC	6 cut(s)	74, 143, 217, 225, 350, 513
HapII	CCGG	7 cut(s)	65, 371, 431, 455, 470, 515, 596
HgaI	GACGC	3 cut(s)	20, 326, 385
HhaI	GCGC	9 cut(s)	7, 86, 106, 307, 328, 394, 408, 438, 601
Hin1I	GRCGYC	3 cut(s)	318, 377, 599
Hin6I	GCGC	9 cut(s)	5, 84, 104, 305, 326, 392, 406, 436, 599
HinP1I	GCGC	9 cut(s)	5, 84, 104, 305, 326, 392, 406, 436, 599
HinfI	GANTC	5 cut(s)	241, 333, 367, 446, 589
HpaII	CCGG	7 cut(s)	65, 371, 431, 455, 470, 515, 596
HphI	GGTGA	2 cut(s)	484, 532
Hpy188I	TCNGA	3 cut(s)	168, 481, 588
Hpy188III	TCNNGA	5 cut(s)	245, 277, 364, 397, 421
Hpy99I	CGWCG	3 cut(s)	14, 379, 463
HpyAV	CCTTC	3 cut(s)	91, 121, 127
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 299, 308, 317, 385, 391, 464
HpyF3I	CTNAG	2 cut(s)	69, 294
Hsp92I	GRCGYC	3 cut(s)	318, 377, 599
HspAI	GCGC	9 cut(s)	5, 84, 104, 305, 326, 392, 406, 436, 599
KasI	GGCGCC	1 cut(s)	598
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
KspI	CCGCGG	3 cut(s)	202, 237, 340
Kzo9I	GATC	4 cut(s)	46, 247, 399, 583
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	2 cut(s)	101, 397
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	48, 249, 401, 585
MboI	GATC	4 cut(s)	46, 247, 399, 583
MboII	GAAGA	7 cut(s)	103, 106, 136, 547, 550, 577, 584
MhlI	GDGCHC	2 cut(s)	420, 515
MluCI	AATT	1 cut(s)	505
Mly113I	GGCGCC	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	146, 459
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	572
MspA1I	CMGCKG	3 cut(s)	201, 236, 339
MspI	CCGG	7 cut(s)	65, 371, 431, 455, 470, 515, 596
MspR9I	CCNGG	4 cut(s)	79, 253, 431, 515
MvaI	CCWGG	2 cut(s)	79, 253
MwoI	GCNNNNNNNGC	7 cut(s)	11, 299, 308, 317, 385, 391, 464
NaeI	GCCGGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	599
NciI	CCSGG	2 cut(s)	431, 515
NdeII	GATC	4 cut(s)	46, 247, 399, 583
NgoMIV	GCCGGC	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	224, 280, 425, 468, 513, 600
NruI	TCGCGA	1 cut(s)	246
NsbI	TGCGCA	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	4 cut(s)	241, 333, 367, 589
PflFI	GACNNNGTC	2 cut(s)	175, 259
PleI	GAGTC	1 cut(s)	440
PluTI	GGCGCC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	77, 251
PspGI	CCWGG	2 cut(s)	77, 251
PspN4I	GGNNCC	6 cut(s)	224, 280, 425, 468, 513, 600
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	7 cut(s)	223, 255, 279, 348, 423, 511, 512
PspPPI	RGGWCCY	1 cut(s)	279
PsyI	GACNNNGTC	2 cut(s)	175, 259
RruI	TCGCGA	1 cut(s)	246
SacII	CCGCGG	3 cut(s)	202, 237, 340
Sau3AI	GATC	4 cut(s)	46, 247, 399, 583
Sau96I	GGNCC	7 cut(s)	223, 255, 279, 348, 423, 511, 512
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	4 cut(s)	79, 253, 431, 515
SduI	GDGCHC	2 cut(s)	420, 515
SetI	ASST	6 cut(s)	26, 166, 179, 284, 479, 501
SfoI	GGCGCC	1 cut(s)	600
Sfr303I	CCGCGG	3 cut(s)	202, 237, 340
SgrBI	CCGCGG	3 cut(s)	202, 237, 340
SinI	GGWCC	3 cut(s)	255, 279, 423
Sse9I	AATT	1 cut(s)	505
SseBI	AGGCCT	1 cut(s)	74
SspDI	GGCGCC	1 cut(s)	598
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	77, 251, 429, 513
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	2 cut(s)	9, 363
TasI	AATT	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	241, 333, 367, 589
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	114, 385
TspDTI	ATGAA	3 cut(s)	104, 137, 557
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	2 cut(s)	175, 259
VpaK11BI	GGWCC	3 cut(s)	255, 279, 423
XapI	RAATTY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.