Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

18311599 .. 18312754

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCACCCGACGACGCAATGTCCACCTCACTCGCCCCTCTCGCCGCCACCGATCCTCCGGCACCTCAGTCGGCGCTTGTTCGAGGCTCGACGAAGAGTGCTGCGGAGGCCGGCGGCGAAATGAAGAAGGCGGCGGGGAGCGGCCGATATCGGAAGACGTCGTCGTCGAATCAGCCGCATTTTCGCGGCGTGAGGAGGCGGCCGTGGGGCCGATACGCAGCGGAGATTCGCAATCCCTTCACCAAGTCGCGCAAGTGGCTCGGGACATTTGACACCGCCGAGGAGGCGGCGCGTGCGTACGACGAAGCGGCACGGGGGTTCCGCGGCTTCAAGGCCAAGACGAACTTCGATGATCCGCCGGCGCCGAAGCAGCTGAAGCCGGTGATCGGGGTAAAGGAAGTGTTTTGGACTCCTCTGGTGCGCAGGAGGGGCTATGTTCCGGCGCCGGTGAGGTCGGAGTACAGAGGATACGAGCTGGAGAAATTGCGCGAGATGATGAGGAAGGAGGAGGAGAAGATGAAGTTGGTGGCGGAGAGCGGTGAGAAGAAGAAGCCGTTACTCTTCGATCTGAATCTCCCGGCGGATCAGTTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

199

Amino Acids

22.16

Weight (kDa)

9.99

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 105	3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	422
AccB1I	GGYRCC	4 cut(s)	4, 61, 361, 442
AccBSI	CCGCTC	2 cut(s)	141, 537
AccII	CGCG	5 cut(s)	186, 250, 292, 324, 489
AclWI	GGATC	3 cut(s)	47, 347, 591
AcoI	YGGCCR	2 cut(s)	142, 200
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	3 cut(s)	158, 362, 443
AfaI	GTAC	2 cut(s)	299, 461
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	331
AhdI	GACNNNNNGTC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 506, 538
AluBI	AGCT	2 cut(s)	373, 475
AluI	AGCT	2 cut(s)	373, 475
AlwI	GGATC	3 cut(s)	47, 347, 591
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	5 cut(s)	108, 142, 200, 208, 333
ApeKI	GCWGC	3 cut(s)	101, 218, 370
AspLEI	GCGC	7 cut(s)	76, 252, 292, 364, 423, 445, 489
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	4 cut(s)	232, 394, 460, 551
AvaI	CYCGRG	1 cut(s)	260
BanI	GGYRCC	4 cut(s)	4, 61, 361, 442
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	88, 230, 382
BceAI	ACGGC	2 cut(s)	187, 538
BcgI	CGANNNNNNTGC	4 cut(s)	51, 85, 241, 275
BciVI	GTATCC	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	578
BfoI	RGCGCY	3 cut(s)	77, 365, 446
BfuI	GTATCC	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	6 cut(s)	6, 63, 209, 320, 363, 444
BmrFI	CCNGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	3 cut(s)	158, 362, 443
BsaJI	CCNNGG	3 cut(s)	203, 279, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	4 cut(s)	110, 358, 379, 445
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	203, 279, 322
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	5 cut(s)	208, 296, 402, 521, 524
BseX3I	CGGCCG	2 cut(s)	142, 200
BseXI	GCAGC	3 cut(s)	88, 230, 382
Bsh1236I	CGCG	5 cut(s)	186, 250, 292, 324, 489
Bsh1285I	CGRYCG	2 cut(s)	145, 203
BshFI	GGCC	5 cut(s)	110, 144, 202, 210, 335
BshNI	GGYRCC	4 cut(s)	4, 61, 361, 442
BsiEI	CGRYCG	2 cut(s)	145, 203
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	7 cut(s)	59, 111, 359, 380, 440, 446, 578
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	5 cut(s)	110, 144, 202, 210, 335
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	5 cut(s)	52, 352, 384, 565, 583
BspANI	GGCC	5 cut(s)	110, 144, 202, 210, 335
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	5 cut(s)	186, 250, 292, 324, 489
BspLI	GGNNCC	6 cut(s)	6, 63, 209, 320, 363, 444
BspPI	GGATC	3 cut(s)	47, 347, 591
BspT107I	GGYRCC	4 cut(s)	4, 61, 361, 442
BsrBI	CCGCTC	2 cut(s)	141, 537
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	4 cut(s)	110, 358, 379, 445
BssAI	RCCGGY	4 cut(s)	110, 358, 379, 445
BssECI	CCNNGG	3 cut(s)	203, 279, 322
BssMI	GATC	5 cut(s)	52, 352, 384, 565, 583
BssNI	GRCGYC	3 cut(s)	158, 362, 443
Bst6I	CTCTTC	2 cut(s)	89, 566
BstACI	GRCGYC	3 cut(s)	158, 362, 443
BstC8I	GCNNGC	3 cut(s)	112, 294, 360
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	2 cut(s)	203, 322
BstFNI	CGCG	5 cut(s)	186, 250, 292, 324, 489
BstH2I	RGCGCY	3 cut(s)	77, 365, 446
BstHHI	GCGC	7 cut(s)	76, 252, 292, 364, 423, 445, 489
BstKTI	GATC	5 cut(s)	55, 355, 387, 568, 586
BstMBI	GATC	5 cut(s)	52, 352, 384, 565, 583
BstMCI	CGRYCG	2 cut(s)	145, 203
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 107, 256, 284, 293, 370, 376, 429
BstSCI	CCNGG	1 cut(s)	576
BstUI	CGCG	5 cut(s)	186, 250, 292, 324, 489
BstV1I	GCAGC	3 cut(s)	88, 230, 382
BstV2I	GAAGAC	1 cut(s)	161
BstZI	CGGCCG	2 cut(s)	142, 200
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	5 cut(s)	110, 144, 202, 210, 335
BtgI	CCRYGG	2 cut(s)	203, 322
Cac8I	GCNNGC	3 cut(s)	112, 294, 360
CfoI	GCGC	7 cut(s)	76, 252, 292, 364, 423, 445, 489
Cfr10I	RCCGGY	4 cut(s)	110, 358, 379, 445
Cfr13I	GGNCC	1 cut(s)	208
Cfr42I	CCGCGG	1 cut(s)	325
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	298, 460
CviQI	GTAC	2 cut(s)	298, 460
DdeI	CTNAG	1 cut(s)	66
DinI	GGCGCC	2 cut(s)	363, 444
DpnI	GATC	5 cut(s)	54, 354, 386, 567, 585
DpnII	GATC	5 cut(s)	52, 352, 384, 565, 583
DrdI	GACNNNNNNGTC	1 cut(s)	163
DriI	GACNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	142, 200
EagI	CGGCCG	2 cut(s)	142, 200
Eam1104I	CTCTTC	2 cut(s)	89, 566
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	2 cut(s)	89, 566
EciI	GGCGGA	3 cut(s)	345, 545, 596
EclXI	CGGCCG	2 cut(s)	142, 200
Eco32I	GATATC	1 cut(s)	149
Eco52I	CGGCCG	2 cut(s)	142, 200
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	149
EgeI	GGCGCC	2 cut(s)	363, 444
EheI	GGCGCC	2 cut(s)	363, 444
FaiI	YATR	1 cut(s)	435
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	277
FauI	CCCGC	1 cut(s)	127
FspI	TGCGCA	1 cut(s)	422
GlaI	GCGC	7 cut(s)	75, 251, 291, 363, 422, 444, 488
GsuI	CTGGAG	1 cut(s)	497
HaeII	RGCGCY	3 cut(s)	77, 365, 446
HaeIII	GGCC	5 cut(s)	110, 144, 202, 210, 335
HapII	CCGG	7 cut(s)	59, 111, 359, 380, 440, 446, 578
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	7 cut(s)	76, 252, 292, 364, 423, 445, 489
Hin1I	GRCGYC	3 cut(s)	158, 362, 443
Hin6I	GCGC	7 cut(s)	74, 250, 290, 362, 421, 443, 487
HinP1I	GCGC	7 cut(s)	74, 250, 290, 362, 421, 443, 487
HinfI	GANTC	4 cut(s)	169, 226, 409, 571
HpaII	CCGG	7 cut(s)	59, 111, 359, 380, 440, 446, 578
HphI	GGTGA	4 cut(s)	232, 394, 460, 551
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	153, 457, 570
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	7 cut(s)	14, 17, 94, 163, 166, 169, 305
HpyAV	CCTTC	3 cut(s)	121, 247, 496
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 107, 256, 284, 293, 370, 376, 429
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	3 cut(s)	158, 362, 443
HspAI	GCGC	7 cut(s)	74, 250, 290, 362, 421, 443, 487
KasI	GGCGCC	2 cut(s)	361, 442
KroI	GCCGGC	2 cut(s)	110, 358
KroNI	GCCGGC	2 cut(s)	112, 360
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	52, 352, 384, 565, 583
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	88, 230, 382
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	5 cut(s)	54, 354, 386, 567, 585
MbiI	CCGCTC	2 cut(s)	141, 537
MboI	GATC	5 cut(s)	52, 352, 384, 565, 583
MboII	GAAGA	7 cut(s)	106, 136, 166, 526, 553, 556, 559
MluCI	AATT	1 cut(s)	482
Mly113I	GGCGCC	2 cut(s)	362, 443
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	435
MreI	CGCCGGCG	1 cut(s)	358
MroNI	GCCGGC	2 cut(s)	110, 358
MspA1I	CMGCKG	3 cut(s)	221, 324, 373
MspI	CCGG	7 cut(s)	59, 111, 359, 380, 440, 446, 578
MspR9I	CCNGG	1 cut(s)	578
MvnI	CGCG	5 cut(s)	186, 250, 292, 324, 489
MwoI	GCNNNNNNNGC	8 cut(s)	41, 107, 256, 284, 293, 370, 376, 429
NaeI	GCCGGC	2 cut(s)	112, 360
NarI	GGCGCC	2 cut(s)	362, 443
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	5 cut(s)	52, 352, 384, 565, 583
NgoMIV	GCCGGC	2 cut(s)	110, 358
NlaIV	GGNNCC	6 cut(s)	6, 63, 209, 320, 363, 444
NmeAIII	GCCGAG	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 164
PdiI	GCCGGC	2 cut(s)	112, 360
PfeI	GAWTC	3 cut(s)	169, 226, 571
Pfl23II	CGTACG	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	403
PluTI	GGCGCC	2 cut(s)	365, 446
PpsI	GAGTC	1 cut(s)	403
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	6 cut(s)	6, 63, 209, 320, 363, 444
PspPI	GGNCC	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	299, 461
RsaNI	GTAC	2 cut(s)	298, 460
SacII	CCGCGG	1 cut(s)	325
Sau3AI	GATC	5 cut(s)	52, 352, 384, 565, 583
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	578
SetI	ASST	6 cut(s)	29, 67, 161, 375, 455, 477
SfoI	GGCGCC	2 cut(s)	363, 444
Sfr303I	CCGCGG	1 cut(s)	325
SgrAI	CRCCGGYG	2 cut(s)	358, 445
SgrBI	CCGCGG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	482
SspDI	GGCGCC	2 cut(s)	361, 442
StyD4I	CCNGG	1 cut(s)	576
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	5 cut(s)	82, 89, 167, 348, 564
TasI	AATT	1 cut(s)	482
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	169, 226, 571
TseI	GCWGC	3 cut(s)	101, 218, 370
TspDTI	ATGAA	2 cut(s)	137, 533
Tth111I	GACNNNGTC	1 cut(s)	160
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.