Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Reverse (-)

18979078 .. 18979710

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGCTCGACGCAATGCACACCTCACTCCCCTCCCTCGCCGCCGATCCTCCTCCGCCGGCGGCGGCGGCGGCTAAGGCCTCCAGGGGCGCGATGAAGAAGAAGAAGAAGGCGGCGCAGGATGGCGGCGAAATGAAGAAGAAGGAGAAGGAGGAGGCCGCGAAAGGCAAAGGCGGCGGCGGAGGTCGGAGGTCAAGGTCGTCCAAGGAGGGGCGTTTCCGTGGTGTGAGGAAGAGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGACGCCGCTCGGGGATTCCGCGGCATAAGGGCCAAGACGAACTTCGAGAATCCGGCGCCGCCGAAGCAGCACGCGCTCGTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGAGCAAGAACGACTCTGTTCCGGCGACGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAAGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

210

Amino Acids

22.84

Weight (kDa)

10.15

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	72 - 118	5.5e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	394, 619
AccBSI	CCGCTC	1 cut(s)	347
AccII	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
AclWI	GGATC	2 cut(s)	41, 263
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	3 cut(s)	342, 395, 620
AfiI	CCNNNNNNNGG	2 cut(s)	210, 291
AjnI	CCWGG	2 cut(s)	83, 272
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 551, 583
AluBI	AGCT	1 cut(s)	520
AluI	AGCT	1 cut(s)	520
Alw21I	GWGCWC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	41, 263
Ama87I	CYCGRG	2 cut(s)	296, 348
AoxI	GGCC	6 cut(s)	78, 156, 236, 244, 369, 532
ApaI	GGGCCC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	7 cut(s)	7, 92, 118, 328, 397, 415, 622
AspS9I	GGNCC	7 cut(s)	244, 276, 300, 369, 444, 532, 533
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	3 cut(s)	466, 505, 553
AvaI	CYCGRG	2 cut(s)	296, 348
AvaII	GGWCC	3 cut(s)	276, 300, 444
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	394, 619
BanII	GRGCYC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	4 cut(s)	223, 498, 577, 607
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	2 cut(s)	85, 274
BcnI	CCSGG	1 cut(s)	536
BfoI	RGCGCY	3 cut(s)	8, 398, 623
Bme1390I	CCNGG	3 cut(s)	85, 274, 536
Bme18I	GGWCC	3 cut(s)	276, 300, 444
BmeT110I	CYCGRG	2 cut(s)	296, 348
BmgT120I	GGNCC	7 cut(s)	244, 276, 300, 369, 444, 532, 533
BmiI	GGNNCC	7 cut(s)	245, 301, 396, 446, 489, 534, 621
BmrFI	CCNGG	3 cut(s)	85, 274, 536
BpmI	CTGGAG	2 cut(s)	67, 542
Bpu10I	CCTNAGC	2 cut(s)	75, 315
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	3 cut(s)	342, 395, 620
BsaJI	CCNNGG	7 cut(s)	84, 204, 220, 239, 255, 272, 358
BsaWI	WCCGGW	2 cut(s)	451, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 291
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	85, 274
BseDI	CCNNGG	7 cut(s)	84, 204, 220, 239, 255, 272, 358
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	210, 291
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	42, 167
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	418
Bsh1236I	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
BshFI	GGCC	6 cut(s)	80, 158, 238, 246, 371, 534
BshNI	GGYRCC	2 cut(s)	394, 619
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	2 cut(s)	296, 348
BsiSI	CCGG	7 cut(s)	59, 392, 452, 476, 491, 536, 617
BslFI	GGGAC	2 cut(s)	268, 313
BslI	CCNNNNNNNGG	2 cut(s)	210, 291
BsmFI	GGGAC	2 cut(s)	268, 313
BsnI	GGCC	6 cut(s)	80, 158, 238, 246, 371, 534
BsoBI	CYCGRG	2 cut(s)	296, 348
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	441, 536
Bsp143I	GATC	4 cut(s)	46, 268, 420, 604
Bsp68I	TCGCGA	1 cut(s)	267
BspANI	GGCC	6 cut(s)	80, 158, 238, 246, 371, 534
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
BspLI	GGNNCC	7 cut(s)	245, 301, 396, 446, 489, 534, 621
BspPI	GGATC	2 cut(s)	41, 263
BspT107I	GGYRCC	2 cut(s)	394, 619
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	598
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	7 cut(s)	84, 204, 220, 239, 255, 272, 358
BssMI	GATC	4 cut(s)	46, 268, 420, 604
BssNI	GRCGYC	3 cut(s)	342, 395, 620
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	85, 274
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	3 cut(s)	342, 395, 620
BstC8I	GCNNGC	4 cut(s)	60, 330, 411, 548
BstDEI	CTNAG	2 cut(s)	75, 315
BstDSI	CCRYGG	4 cut(s)	220, 239, 255, 358
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
BstH2I	RGCGCY	3 cut(s)	8, 398, 623
BstHHI	GCGC	7 cut(s)	7, 92, 118, 328, 397, 415, 622
BstKTI	GATC	4 cut(s)	49, 271, 423, 607
BstMBI	GATC	4 cut(s)	46, 268, 420, 604
BstNI	CCWGG	2 cut(s)	85, 274
BstSCI	CCNGG	3 cut(s)	83, 272, 534
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
BstV1I	GCAGC	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	80, 158, 238, 246, 371, 534
BtgI	CCRYGG	4 cut(s)	220, 239, 255, 358
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	60, 330, 411, 548
CfoI	GCGC	7 cut(s)	7, 92, 118, 328, 397, 415, 622
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	7 cut(s)	244, 276, 300, 369, 444, 532, 533
Cfr42I	CCGCGG	2 cut(s)	258, 361
CseI	GACGC	2 cut(s)	20, 350
DdeI	CTNAG	2 cut(s)	75, 315
DinI	GGCGCC	2 cut(s)	396, 621
DpnI	GATC	4 cut(s)	48, 270, 422, 606
DpnII	GATC	4 cut(s)	46, 268, 420, 604
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	3 cut(s)	45, 195, 590
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	3 cut(s)	276, 300, 444
Eco88I	CYCGRG	2 cut(s)	296, 348
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	83, 272
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	536
EgeI	GGCGCC	2 cut(s)	396, 621
EheI	GGCGCC	2 cut(s)	396, 621
ErhI	CCWWGG	1 cut(s)	204
FaiI	YATR	3 cut(s)	336, 365, 507
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	268, 313
FauI	CCCGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	536
GlaI	GCGC	7 cut(s)	6, 91, 117, 327, 396, 414, 621
GsuI	CTGGAG	2 cut(s)	67, 542
HaeII	RGCGCY	3 cut(s)	8, 398, 623
HaeIII	GGCC	6 cut(s)	80, 158, 238, 246, 371, 534
HapII	CCGG	7 cut(s)	59, 392, 452, 476, 491, 536, 617
HgaI	GACGC	2 cut(s)	20, 350
HhaI	GCGC	7 cut(s)	7, 92, 118, 328, 397, 415, 622
Hin1I	GRCGYC	3 cut(s)	342, 395, 620
Hin6I	GCGC	7 cut(s)	5, 90, 116, 326, 395, 413, 620
HinP1I	GCGC	7 cut(s)	5, 90, 116, 326, 395, 413, 620
HinfI	GANTC	5 cut(s)	262, 354, 388, 467, 610
HpaII	CCGG	7 cut(s)	59, 392, 452, 476, 491, 536, 617
HphI	GGTGA	3 cut(s)	466, 505, 553
Hpy188I	TCNGA	4 cut(s)	189, 502, 609, 632
Hpy188III	TCNNGA	5 cut(s)	266, 298, 385, 418, 442
Hpy99I	CGWCG	3 cut(s)	14, 344, 484
HpyAV	CCTTC	3 cut(s)	103, 136, 142
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	75, 315
Hsp92I	GRCGYC	3 cut(s)	342, 395, 620
HspAI	GCGC	7 cut(s)	5, 90, 116, 326, 395, 413, 620
KasI	GGCGCC	2 cut(s)	394, 619
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
KspI	CCGCGG	2 cut(s)	258, 361
Kzo9I	GATC	4 cut(s)	46, 268, 420, 604
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	48, 270, 422, 606
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	4 cut(s)	46, 268, 420, 604
MhlI	GDGCHC	2 cut(s)	441, 536
MluCI	AATT	1 cut(s)	526
Mly113I	GGCGCC	2 cut(s)	395, 620
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	167, 480
MreI	CGCCGGCG	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	593
MspA1I	CMGCKG	2 cut(s)	257, 360
MspI	CCGG	7 cut(s)	59, 392, 452, 476, 491, 536, 617
MspR9I	CCNGG	3 cut(s)	85, 274, 536
MvaI	CCWGG	2 cut(s)	85, 274
MvnI	CGCG	7 cut(s)	92, 161, 257, 267, 328, 360, 413
NaeI	GCCGGC	1 cut(s)	60
NarI	GGCGCC	2 cut(s)	395, 620
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	4 cut(s)	46, 268, 420, 604
NgoMIV	GCCGGC	1 cut(s)	58
NlaIV	GGNNCC	7 cut(s)	245, 301, 396, 446, 489, 534, 621
NruI	TCGCGA	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	4 cut(s)	262, 354, 388, 610
PflFI	GACNNNGTC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	461
PluTI	GGCGCC	2 cut(s)	398, 623
PpsI	GAGTC	1 cut(s)	461
PpuMI	RGGWCCY	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	83, 272
PspGI	CCWGG	2 cut(s)	83, 272
PspN4I	GGNNCC	7 cut(s)	245, 301, 396, 446, 489, 534, 621
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	7 cut(s)	244, 276, 300, 369, 444, 532, 533
PspPPI	RGGWCCY	1 cut(s)	300
PsyI	GACNNNGTC	1 cut(s)	280
RruI	TCGCGA	1 cut(s)	267
SacII	CCGCGG	2 cut(s)	258, 361
Sau3AI	GATC	4 cut(s)	46, 268, 420, 604
Sau96I	GGNCC	7 cut(s)	244, 276, 300, 369, 444, 532, 533
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	85, 274, 536
SduI	GDGCHC	2 cut(s)	441, 536
SetI	ASST	7 cut(s)	26, 187, 194, 200, 305, 500, 522
SfoI	GGCGCC	2 cut(s)	396, 621
Sfr303I	CCGCGG	2 cut(s)	258, 361
SgrAI	CRCCGGYG	1 cut(s)	58
SgrBI	CCGCGG	2 cut(s)	258, 361
SinI	GGWCC	3 cut(s)	276, 300, 444
Sse9I	AATT	1 cut(s)	526
SseBI	AGGCCT	1 cut(s)	80
SspDI	GGCGCC	2 cut(s)	394, 619
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	83, 272, 534
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	2 cut(s)	9, 384
TasI	AATT	1 cut(s)	526
TfiI	GAWTC	4 cut(s)	262, 354, 388, 610
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	3 cut(s)	110, 149, 578
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	280
VpaK11BI	GGWCC	3 cut(s)	276, 300, 444
XapI	RAATTY	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.