Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

51246733 .. 51247284

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG313200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGGTCGGCGCACGTCAGAGGCGCGATGAAGAAGAAGGCGGCCCAGGATGGCGGCGAAATGAAGAAGGAGAAGGAGGAGGGCGCGAAAGGCGGCGGCGGAGGTCGGAGGTCGAGGTCGTCCAAGGAGGGGAGTTTCCGCGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCTGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGCCGCCGCTCGGGGATTCCGCGGCGTAAGGGCCAAGACCAACTTCGAGAATCCGGCGCCGCCGAAGCAGCACGCGCTCCTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGCGCAAGAACGACTCTGTTCCGGCTCCAGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAGGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

183

Amino Acids

20.26

Weight (kDa)

10.32

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 91	5.9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	313, 538
AccBSI	CCGCTC	1 cut(s)	266
AccII	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	445
AcyI	GRCGYC	3 cut(s)	258, 314, 539
AfiI	CCNNNNNNNGG	4 cut(s)	129, 210, 267, 343
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	45, 191
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 316, 470, 502
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	2 cut(s)	215, 267
AoxI	GGCC	5 cut(s)	42, 155, 163, 288, 451
ApaI	GGGCCC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	8 cut(s)	13, 26, 86, 247, 316, 334, 378, 541
AspS9I	GGNCC	8 cut(s)	43, 163, 195, 219, 288, 363, 451, 452
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	424, 472
AvaI	CYCGRG	2 cut(s)	215, 267
AvaII	GGWCC	3 cut(s)	195, 219, 363
BaeGI	GKGCMC	1 cut(s)	455
BanI	GGYRCC	2 cut(s)	313, 538
BanII	GRGCYC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	3 cut(s)	142, 496, 526
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	47, 193
BcnI	CCSGG	1 cut(s)	455
BfoI	RGCGCY	2 cut(s)	317, 542
Bme1390I	CCNGG	3 cut(s)	47, 193, 455
Bme18I	GGWCC	3 cut(s)	195, 219, 363
BmeT110I	CYCGRG	2 cut(s)	215, 267
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	8 cut(s)	43, 163, 195, 219, 288, 363, 451, 452
BmiI	GGNNCC	8 cut(s)	164, 220, 315, 365, 399, 408, 453, 540
BmrFI	CCNGG	3 cut(s)	47, 193, 455
BpmI	CTGGAG	2 cut(s)	384, 461
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	3 cut(s)	258, 314, 539
BsaJI	CCNNGG	6 cut(s)	45, 123, 139, 158, 191, 277
BsaWI	WCCGGW	2 cut(s)	370, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 210, 267, 343
Bse1I	ACTGG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	47, 193
BseDI	CCNNGG	6 cut(s)	45, 123, 139, 158, 191, 277
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	4 cut(s)	129, 210, 267, 343
BseMII	CTCAG	2 cut(s)	168, 225
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	5 cut(s)	44, 157, 165, 290, 453
BshNI	GGYRCC	2 cut(s)	313, 538
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	2 cut(s)	215, 267
BsiSI	CCGG	6 cut(s)	311, 371, 395, 410, 455, 536
BslFI	GGGAC	2 cut(s)	187, 232
BslI	CCNNNNNNNGG	4 cut(s)	129, 210, 267, 343
BsmFI	GGGAC	2 cut(s)	187, 232
BsnI	GGCC	5 cut(s)	44, 157, 165, 290, 453
BsoBI	CYCGRG	2 cut(s)	215, 267
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	360, 455
Bsp143I	GATC	3 cut(s)	187, 339, 523
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	5 cut(s)	44, 157, 165, 290, 453
BspCNI	CTCAG	2 cut(s)	169, 226
BspFNI	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
BspLI	GGNNCC	8 cut(s)	164, 220, 315, 365, 399, 408, 453, 540
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	2 cut(s)	313, 538
BsrBI	CCGCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	45, 123, 139, 158, 191, 277
BssMI	GATC	3 cut(s)	187, 339, 523
BssNI	GRCGYC	3 cut(s)	258, 314, 539
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	47, 193
BstACI	GRCGYC	3 cut(s)	258, 314, 539
BstC8I	GCNNGC	3 cut(s)	249, 330, 467
BstDEI	CTNAG	2 cut(s)	177, 234
BstDSI	CCRYGG	3 cut(s)	139, 158, 277
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
BstH2I	RGCGCY	2 cut(s)	317, 542
BstHHI	GCGC	8 cut(s)	13, 26, 86, 247, 316, 334, 378, 541
BstKTI	GATC	3 cut(s)	190, 342, 526
BstMBI	GATC	3 cut(s)	187, 339, 523
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 239, 248, 257, 322, 325, 331, 404
BstNI	CCWGG	2 cut(s)	47, 193
BstSCI	CCNGG	3 cut(s)	45, 191, 453
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
BstV1I	GCAGC	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	155
BsuRI	GGCC	5 cut(s)	44, 157, 165, 290, 453
BtgI	CCRYGG	3 cut(s)	139, 158, 277
BtgZI	GCGATG	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	249, 330, 467
CfoI	GCGC	8 cut(s)	13, 26, 86, 247, 316, 334, 378, 541
Cfr13I	GGNCC	8 cut(s)	43, 163, 195, 219, 288, 363, 451, 452
Cfr42I	CCGCGG	2 cut(s)	142, 280
CseI	GACGC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	177, 234
DinI	GGCGCC	2 cut(s)	315, 540
DpnI	GATC	3 cut(s)	189, 341, 525
DpnII	GATC	3 cut(s)	187, 339, 523
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
EciI	GGCGGA	2 cut(s)	114, 509
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	3 cut(s)	195, 219, 363
Eco52I	CGGCCG	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	215, 267
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	45, 191
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	455
EgeI	GGCGCC	2 cut(s)	315, 540
EheI	GGCGCC	2 cut(s)	315, 540
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	2 cut(s)	255, 426
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	187, 232
FauI	CCCGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	455
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	8 cut(s)	12, 25, 85, 246, 315, 333, 377, 540
GsuI	CTGGAG	2 cut(s)	384, 461
HaeII	RGCGCY	2 cut(s)	317, 542
HaeIII	GGCC	5 cut(s)	44, 157, 165, 290, 453
HapII	CCGG	6 cut(s)	311, 371, 395, 410, 455, 536
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	8 cut(s)	13, 26, 86, 247, 316, 334, 378, 541
Hin1I	GRCGYC	3 cut(s)	258, 314, 539
Hin6I	GCGC	8 cut(s)	11, 24, 84, 245, 314, 332, 376, 539
HinP1I	GCGC	8 cut(s)	11, 24, 84, 245, 314, 332, 376, 539
HinfI	GANTC	5 cut(s)	181, 273, 307, 386, 529
HpaII	CCGG	6 cut(s)	311, 371, 395, 410, 455, 536
HphI	GGTGA	2 cut(s)	424, 472
Hpy188I	TCNGA	5 cut(s)	20, 108, 421, 528, 551
Hpy188III	TCNNGA	5 cut(s)	185, 217, 304, 337, 361
HpyAV	CCTTC	3 cut(s)	31, 61, 67
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 239, 248, 257, 322, 325, 331, 404
HpyF3I	CTNAG	2 cut(s)	177, 234
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	3 cut(s)	258, 314, 539
HspAI	GCGC	8 cut(s)	11, 24, 84, 245, 314, 332, 376, 539
KasI	GGCGCC	2 cut(s)	313, 538
KspI	CCGCGG	2 cut(s)	142, 280
Kzo9I	GATC	3 cut(s)	187, 339, 523
LmnI	GCTCC	3 cut(s)	339, 403, 412
Lsp1109I	GCAGC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	189, 341, 525
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	3 cut(s)	187, 339, 523
MboII	GAAGA	7 cut(s)	43, 46, 76, 487, 490, 517, 524
MhlI	GDGCHC	2 cut(s)	360, 455
MluCI	AATT	1 cut(s)	445
Mly113I	GGCGCC	2 cut(s)	314, 539
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	86, 399
MroXI	GAANNNNTTC	1 cut(s)	512
MspA1I	CMGCKG	4 cut(s)	141, 176, 279, 404
MspI	CCGG	6 cut(s)	311, 371, 395, 410, 455, 536
MspR9I	CCNGG	3 cut(s)	47, 193, 455
MvaI	CCWGG	2 cut(s)	47, 193
MvnI	CGCG	7 cut(s)	26, 86, 141, 186, 247, 279, 332
MwoI	GCNNNNNNNGC	8 cut(s)	90, 239, 248, 257, 322, 325, 331, 404
NarI	GGCGCC	2 cut(s)	314, 539
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	3 cut(s)	187, 339, 523
NlaIV	GGNNCC	8 cut(s)	164, 220, 315, 365, 399, 408, 453, 540
NruI	TCGCGA	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	181, 273, 307, 529
PflFI	GACNNNGTC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	380
PluTI	GGCGCC	2 cut(s)	317, 542
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	45, 191
PspGI	CCWGG	2 cut(s)	45, 191
PspN4I	GGNNCC	8 cut(s)	164, 220, 315, 365, 399, 408, 453, 540
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	8 cut(s)	43, 163, 195, 219, 288, 363, 451, 452
PspPPI	RGGWCCY	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	186
SacII	CCGCGG	2 cut(s)	142, 280
Sau3AI	GATC	3 cut(s)	187, 339, 523
Sau96I	GGNCC	8 cut(s)	43, 163, 195, 219, 288, 363, 451, 452
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	47, 193, 455
SduI	GDGCHC	2 cut(s)	360, 455
SetI	ASST	8 cut(s)	8, 18, 106, 113, 119, 224, 419, 441
SfoI	GGCGCC	2 cut(s)	315, 540
Sfr303I	CCGCGG	2 cut(s)	142, 280
SgrBI	CCGCGG	2 cut(s)	142, 280
SinI	GGWCC	3 cut(s)	195, 219, 363
Sse9I	AATT	1 cut(s)	445
SspDI	GGCGCC	2 cut(s)	313, 538
StyD4I	CCNGG	3 cut(s)	45, 191, 453
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	113, 303
TasI	AATT	1 cut(s)	445
TfiI	GAWTC	4 cut(s)	181, 273, 307, 529
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	44, 77, 497
TspRI	CASTG	1 cut(s)	235
Tth111I	GACNNNGTC	1 cut(s)	199
VpaK11BI	GGWCC	3 cut(s)	195, 219, 363
XapI	RAATTY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.