Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014245

Physical Location & Seq

Genomic Coordinates Forward (+)

55187782 .. 55188519

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG320800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGCTCGACGCAATGCACACCTCACTCCCCTCCCTCGCCGCCGATCCTCCTCCGCCGCCGCCTGCTAAGGCCTCCAGGGGCGCGATGAGGTCGGCGCACGTCAGAGGCGCGATGAGGATGAAGAAGAAGGCGGCGCAGGATGGCGGCGAAATGAAGGAGGAGGCCGCGAAAGGCGGCGGCGGAGGTCGGAGGTCAATGTCGACCAAGGAGGGGCGTTTCCGCGGCGTGAGGAAGCGGCCGTGGGGCCGATACGCCGCGGAGATTCGCGATCCCTGGACCAAGTCCCGCAAGTGGCTCGGGACCTTTGACACTGCTGAGGAAGCGGCGCGTGCCTATGACGACGCCGCTCGGGGATTCCGCGGCATAAGGGCCAAGACGAACTTCGACAATCCGGCTCCGCCGCAGCAGCACGCGCTCGTGATCGGGGGCAAGGAAGTGCTCTGGACCCCTCCGGTGCGCAAGAACGACTCTGTTCCGGCGCCGGCGGCTCCGGTGAGGTCGGAGTATAAGGGTTACAAGCTGGAGAATTTGGGCCCGGTGGTGAGCGAGCAGGAGAAGAAGATGAAGTTGGCGGCGGAGAGCAAGAAGAAGCCGTTCCAGTTTGATCTGAATCTTCCGGCGCCGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009966 GO:0009968 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043565 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

211

Amino Acids

23.09

Weight (kDa)

10.23

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	73 - 119	5.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53170
fragaria_vesca	FvH4_2g22290
malus_domestica	MD05G1204300.v1.1 MD10G1191300.v1.1
prunus_persica	Prupe.8G230600_v2.0.a1
pyrus_communis	pycom10g16490
rosa_chinensis	RchiOBHm_Chr6g0289271
rosa_laevigata	RLG00000012317
rosa_multiflora	Rmu_sc0001527.1_g000016 Rmu_sc0034080.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179380
rosa_rugosa	Rorug06G0202400
rosa_samantha	Rh6AG313200 Rh6BG320800 Rh6CG327000 Rh6DG312700
rosa_wichuraiana	Rw6G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	481, 622
AccBSI	CCGCTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
AclWI	GGATC	2 cut(s)	41, 266
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	3 cut(s)	345, 482, 623
AfiI	CCNNNNNNNGG	2 cut(s)	213, 294
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	77, 275
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 400, 554, 586
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	41, 266
Ama87I	CYCGRG	2 cut(s)	299, 351
AoxI	GGCC	6 cut(s)	72, 165, 239, 247, 372, 535
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	2 cut(s)	406, 409
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	7 cut(s)	247, 279, 303, 372, 447, 535, 536
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	508, 556
AvaI	CYCGRG	2 cut(s)	299, 351
AvaII	GGWCC	3 cut(s)	279, 303, 447
BaeGI	GKGCMC	1 cut(s)	539
BanI	GGYRCC	2 cut(s)	481, 622
BanII	GRGCYC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	418, 421
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	3 cut(s)	226, 580, 610
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	2 cut(s)	79, 277
BcnI	CCSGG	1 cut(s)	539
BfoI	RGCGCY	3 cut(s)	8, 485, 626
Bme1390I	CCNGG	3 cut(s)	79, 277, 539
Bme18I	GGWCC	3 cut(s)	279, 303, 447
BmeT110I	CYCGRG	2 cut(s)	299, 351
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	7 cut(s)	247, 279, 303, 372, 447, 535, 536
BmiI	GGNNCC	8 cut(s)	248, 304, 399, 449, 483, 492, 537, 624
BmrFI	CCNGG	3 cut(s)	79, 277, 539
BpmI	CTGGAG	2 cut(s)	61, 545
Bpu10I	CCTNAGC	2 cut(s)	69, 318
BpuMI	CCSGG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	3 cut(s)	345, 482, 623
BsaJI	CCNNGG	7 cut(s)	78, 207, 223, 242, 258, 275, 361
BsaWI	WCCGGW	2 cut(s)	454, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 294
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	2 cut(s)	79, 277
BseDI	CCNNGG	7 cut(s)	78, 207, 223, 242, 258, 275, 361
BseGI	GGATG	2 cut(s)	126, 148
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	213, 294
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	42, 176
BseSI	GKGCMC	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	418, 421
Bsh1236I	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	6 cut(s)	74, 167, 241, 249, 374, 537
BshNI	GGYRCC	2 cut(s)	481, 622
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	2 cut(s)	299, 351
BsiSI	CCGG	7 cut(s)	395, 455, 479, 485, 494, 539, 620
BslFI	GGGAC	2 cut(s)	271, 316
BslI	CCNNNNNNNGG	2 cut(s)	213, 294
BsmFI	GGGAC	2 cut(s)	271, 316
BsnI	GGCC	6 cut(s)	74, 167, 241, 249, 374, 537
BsoBI	CYCGRG	2 cut(s)	299, 351
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	2 cut(s)	444, 539
Bsp143I	GATC	4 cut(s)	46, 271, 423, 607
Bsp68I	TCGCGA	1 cut(s)	270
BspANI	GGCC	6 cut(s)	74, 167, 241, 249, 374, 537
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
BspLI	GGNNCC	8 cut(s)	248, 304, 399, 449, 483, 492, 537, 624
BspPI	GGATC	2 cut(s)	41, 266
BspT107I	GGYRCC	2 cut(s)	481, 622
BsrBI	CCGCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	7 cut(s)	78, 207, 223, 242, 258, 275, 361
BssMI	GATC	4 cut(s)	46, 271, 423, 607
BssNI	GRCGYC	3 cut(s)	345, 482, 623
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	79, 277
BstACI	GRCGYC	3 cut(s)	345, 482, 623
BstC8I	GCNNGC	5 cut(s)	66, 333, 414, 486, 551
BstDEI	CTNAG	2 cut(s)	69, 318
BstDSI	CCRYGG	4 cut(s)	223, 242, 258, 361
BstF5I	GGATG	2 cut(s)	126, 148
BstFNI	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
BstH2I	RGCGCY	3 cut(s)	8, 485, 626
BstKTI	GATC	4 cut(s)	49, 274, 426, 610
BstMBI	GATC	4 cut(s)	46, 271, 423, 607
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 323, 332, 409, 415, 488
BstNI	CCWGG	2 cut(s)	79, 277
BstSCI	CCNGG	3 cut(s)	77, 275, 537
BstSLI	GKGCMC	1 cut(s)	539
BstUI	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
BstV1I	GCAGC	2 cut(s)	418, 421
BstZI	CGGCCG	1 cut(s)	239
BsuRI	GGCC	6 cut(s)	74, 167, 241, 249, 374, 537
BtgI	CCRYGG	4 cut(s)	223, 242, 258, 361
BtgZI	GCGATG	2 cut(s)	101, 128
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	126, 148
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
BtuMI	TCGCGA	1 cut(s)	270
Cac8I	GCNNGC	5 cut(s)	66, 333, 414, 486, 551
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	7 cut(s)	247, 279, 303, 372, 447, 535, 536
Cfr42I	CCGCGG	3 cut(s)	226, 261, 364
CseI	GACGC	2 cut(s)	20, 353
DdeI	CTNAG	2 cut(s)	69, 318
DinI	GGCGCC	2 cut(s)	483, 624
DpnI	GATC	4 cut(s)	48, 273, 425, 609
DpnII	GATC	4 cut(s)	46, 271, 423, 607
EaeI	YGGCCR	1 cut(s)	239
EagI	CGGCCG	1 cut(s)	239
EciI	GGCGGA	4 cut(s)	45, 198, 390, 593
EclXI	CGGCCG	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	3 cut(s)	279, 303, 447
Eco52I	CGGCCG	1 cut(s)	239
Eco88I	CYCGRG	2 cut(s)	299, 351
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	77, 275
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	539
EgeI	GGCGCC	2 cut(s)	483, 624
EheI	GGCGCC	2 cut(s)	483, 624
ErhI	CCWWGG	1 cut(s)	207
FaiI	YATR	3 cut(s)	339, 368, 510
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	271, 316
FauI	CCCGC	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	203
FokI	GGATG	2 cut(s)	133, 155
FriOI	GRGCYC	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	461
GsuI	CTGGAG	2 cut(s)	61, 545
HaeII	RGCGCY	3 cut(s)	8, 485, 626
HaeIII	GGCC	6 cut(s)	74, 167, 241, 249, 374, 537
HapII	CCGG	7 cut(s)	395, 455, 479, 485, 494, 539, 620
HgaI	GACGC	2 cut(s)	20, 353
Hin1I	GRCGYC	3 cut(s)	345, 482, 623
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	4 cut(s)	265, 357, 470, 613
HpaII	CCGG	7 cut(s)	395, 455, 479, 485, 494, 539, 620
HphI	GGTGA	2 cut(s)	508, 556
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	107, 192, 505, 612
Hpy188III	TCNNGA	4 cut(s)	269, 301, 421, 445
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	14, 347
HpyAV	CCTTC	2 cut(s)	124, 151
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 323, 332, 409, 415, 488
HpyF3I	CTNAG	2 cut(s)	69, 318
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	3 cut(s)	345, 482, 623
KasI	GGCGCC	2 cut(s)	481, 622
KroI	GCCGGC	1 cut(s)	484
KroNI	GCCGGC	1 cut(s)	486
KspI	CCGCGG	3 cut(s)	226, 261, 364
Kzo9I	GATC	4 cut(s)	46, 271, 423, 607
LmnI	GCTCC	2 cut(s)	403, 496
Lsp1109I	GCAGC	2 cut(s)	418, 421
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	4 cut(s)	48, 273, 425, 609
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	4 cut(s)	46, 271, 423, 607
MboII	GAAGA	6 cut(s)	136, 139, 571, 574, 601, 608
MhlI	GDGCHC	2 cut(s)	444, 539
MluCI	AATT	1 cut(s)	529
Mly113I	GGCGCC	2 cut(s)	482, 623
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	170, 483
MreI	CGCCGGCG	1 cut(s)	484
MroNI	GCCGGC	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	596
MspA1I	CMGCKG	3 cut(s)	225, 260, 363
MspI	CCGG	7 cut(s)	395, 455, 479, 485, 494, 539, 620
MspR9I	CCNGG	3 cut(s)	79, 277, 539
MvaI	CCWGG	2 cut(s)	79, 277
MvnI	CGCG	9 cut(s)	86, 113, 170, 225, 260, 270, 331, 363, 416
MwoI	GCNNNNNNNGC	6 cut(s)	11, 323, 332, 409, 415, 488
NaeI	GCCGGC	1 cut(s)	486
NarI	GGCGCC	2 cut(s)	482, 623
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	4 cut(s)	46, 271, 423, 607
NgoMIV	GCCGGC	1 cut(s)	484
NlaIV	GGNNCC	8 cut(s)	248, 304, 399, 449, 483, 492, 537, 624
NruI	TCGCGA	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	265, 357, 613
PflFI	GACNNNGTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	464
PluTI	GGCGCC	2 cut(s)	485, 626
PpsI	GAGTC	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	77, 275
PspGI	CCWGG	2 cut(s)	77, 275
PspN4I	GGNNCC	8 cut(s)	248, 304, 399, 449, 483, 492, 537, 624
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	7 cut(s)	247, 279, 303, 372, 447, 535, 536
PspPPI	RGGWCCY	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	283
RruI	TCGCGA	1 cut(s)	270
SacII	CCGCGG	3 cut(s)	226, 261, 364
SalI	GTCGAC	1 cut(s)	202
Sau3AI	GATC	4 cut(s)	46, 271, 423, 607
Sau96I	GGNCC	7 cut(s)	247, 279, 303, 372, 447, 535, 536
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	3 cut(s)	79, 277, 539
SduI	GDGCHC	2 cut(s)	444, 539
SetI	ASST	8 cut(s)	26, 95, 105, 190, 197, 308, 503, 525
SfoI	GGCGCC	2 cut(s)	483, 624
Sfr303I	CCGCGG	3 cut(s)	226, 261, 364
SgrAI	CRCCGGYG	1 cut(s)	484
SgrBI	CCGCGG	3 cut(s)	226, 261, 364
SinI	GGWCC	3 cut(s)	279, 303, 447
Sse9I	AATT	1 cut(s)	529
SseBI	AGGCCT	1 cut(s)	74
SspDI	GGCGCC	2 cut(s)	481, 622
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	77, 275, 537
StyI	CCWWGG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	9, 203, 387
TasI	AATT	1 cut(s)	529
TfiI	GAWTC	3 cut(s)	265, 357, 613
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	406, 409
TspDTI	ATGAA	3 cut(s)	137, 170, 581
TspRI	CASTG	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	283
VpaK11BI	GGWCC	3 cut(s)	279, 303, 447
XapI	RAATTY	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.