AT1G55340

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006325
Physical Location & Seq
Forward (+)
20651814 .. 20653764
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55340.1

Sequence Viewer

Length: 618 bp
ATGGAGGAGGTAAAGGGACAAAGAGGAAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGTGAGAGGAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCCAATGGCAAATCAACTGATTGTTTGACTAAACGTAAACTCATTTCTCGTGCTGTCTCTTCTGAGAGAGGCTCACCTTCTCGACATCTTAACCGTCCTAACAAGATCACTGATTCTCTAGTCAATGTGCGGAGATCGTTTATGGCGTCGCCCGAGAAGGAAGATAGGTATTATACAACAAGGGGTTCGATGGGAATAGATGAGAGTGGGAAAATTATTAAGGAACCTGTGAAAGAAACAAAGAAGCATGTGTGGCCAAAGTTGTATATAGCTTTGTCAAATAAAGAGAAGGAAGAAGATTTTTTGGCTATGAAAGGTTGCAAGCTTCCTCAAAGACCTAAGAAGCGAGCCAAATTGGTTCAGAAGACATTGCTTCTGGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAAAGAGAGATATGAAGTAAGAGAGAAGAAGACTTCAAAGAAGAGACCAAGAGGATTGAAGGCAATGGGGAGCATGGAAAGCGATTCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

205

Amino Acids

23.46

Weight (kDa)

10.01

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 130 - 179 3.4e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 561, 583
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 3 cut(s) 386, 439, 506
AluI AGCT 3 cut(s) 386, 439, 506
Alw26I GTCTC 2 cut(s) 175, 562
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 368
AsuHPI GGTGA 3 cut(s) 77, 180, 505
AvaI CYCGRG 1 cut(s) 266
BalI TGGCCA 1 cut(s) 370
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 485, 560
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 175, 562
BfaI CTAG 1 cut(s) 233
BglII AGATCT 1 cut(s) 517
Bme1390I CCNGG 1 cut(s) 501
BmeT110I CYCGRG 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 34, 339
BmrFI CCNGG 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 485, 560
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BsaHI GRCGYC 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 562
Bse3DI GCAATG 3 cut(s) 65, 482, 594
BseBI CCWGG 1 cut(s) 501
BseMI GCAATG 3 cut(s) 65, 482, 594
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 175, 562
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 4 cut(s) 103, 219, 248, 517
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 34, 339
BspTNI GGTCTC 1 cut(s) 562
BsrDI GCAATG 3 cut(s) 65, 482, 594
BssMI GATC 4 cut(s) 103, 219, 248, 517
BssNI GRCGYC 1 cut(s) 260
BssSI CACGAG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 178, 560
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 437, 462
BstDEI CTNAG 2 cut(s) 177, 453
BstKTI GATC 4 cut(s) 106, 222, 251, 520
BstMAI GTCTC 2 cut(s) 175, 562
BstMBI GATC 4 cut(s) 103, 219, 248, 517
BstMWI GCNNNNNNNGC 2 cut(s) 367, 603
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 499
BstV2I GAAGAC 2 cut(s) 485, 560
BstX2I RGATCY 1 cut(s) 517
BstXI CCANNNNNNTGG 1 cut(s) 507
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 437, 462
CseI GACGC 1 cut(s) 249
CviAII CATG 2 cut(s) 362, 598
CviJI RGCY 8 cut(s) 111, 186, 370, 386, 422, 439, 464, 506
CviKI_1 RGCY 8 cut(s) 111, 186, 370, 386, 422, 439, 464, 506
DdeI CTNAG 2 cut(s) 177, 453
DpnI GATC 4 cut(s) 105, 221, 250, 519
DpnII GATC 4 cut(s) 103, 219, 248, 517
EaeI YGGCCR 1 cut(s) 368
Eam1104I CTCTTC 2 cut(s) 178, 560
EarI CTCTTC 2 cut(s) 178, 560
Eco31I GGTCTC 1 cut(s) 562
Eco88I CYCGRG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 2 cut(s) 365, 601
FaiI YATR 9 cut(s) 89, 257, 288, 363, 381, 383, 425, 537, 599
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 361, 597
FspBI CTAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 370
HgaI GACGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 2 cut(s) 365, 601
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 227, 496, 608
HphI GGTGA 3 cut(s) 77, 180, 505
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 4 cut(s) 178, 477, 517, 613
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 201, 265, 397, 577
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 58, 435, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 603
HpyF3I CTNAG 2 cut(s) 177, 453
HpySE526I ACGT 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 2 cut(s) 365, 601
Kzo9I GATC 4 cut(s) 103, 219, 248, 517
LmnI GCTCC 2 cut(s) 503, 594
LpnPI CCDG 4 cut(s) 354, 476, 486, 513
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 148
MalI GATC 4 cut(s) 105, 221, 250, 519
MboI GATC 4 cut(s) 103, 219, 248, 517
MboII GAAGA 9 cut(s) 109, 165, 287, 419, 422, 490, 562, 565, 577
MflI RGATCY 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 370
MluCI AATT 2 cut(s) 327, 467
MluNI TGGCCA 1 cut(s) 370
MlyI GAGTC 1 cut(s) 505
MnlI CCTC 6 cut(s) 17, 34, 63, 176, 453, 569
Mox20I TGGCCA 1 cut(s) 370
MscI TGGCCA 1 cut(s) 370
MseI TTAA 2 cut(s) 204, 333
Msp20I TGGCCA 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 367, 603
NdeII GATC 4 cut(s) 103, 219, 248, 517
NlaIII CATG 2 cut(s) 365, 601
NlaIV GGNNCC 2 cut(s) 34, 339
NspI RCATGY 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PfeI GAWTC 2 cut(s) 227, 608
PfoI TCCNGGA 1 cut(s) 499
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 34, 339
PsuI RGATCY 1 cut(s) 517
SaqAI TTAA 2 cut(s) 204, 333
Sau3AI GATC 4 cut(s) 103, 219, 248, 517
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 501
Sse9I AATT 2 cut(s) 327, 467
SsiI CCGC 1 cut(s) 244
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 196, 302
TasI AATT 2 cut(s) 327, 467
TfiI GAWTC 2 cut(s) 227, 608
Tru1I TTAA 2 cut(s) 204, 333
Tru9I TTAA 2 cut(s) 204, 333
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 104, 440, 552
TspRI CASTG 1 cut(s) 229
XceI RCATGY 1 cut(s) 365
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.