Rh5DG572700

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006325
Physical Location & Seq
Forward (+)
87978694 .. 87984516
5823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG572700.1

Sequence Viewer

Length: 600 bp
ATGGGGATGGAAAAGCAAGGGAATAGCAGTAAAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAAGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACAGCAACCCCAAACCCAGGAAAATCAAAGACTCTCCCTCTCCACTACCACAGCGCATCAACAAGAGCTCAGCGTCGCCAATGAATAGTAGAAAGTTATTTATCACATCGCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTATGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGCAGGTTACCTCAAAGGCCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCTTACATTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCAGGGGATTGAAGGCTATGGGAAGTTTGGATAGTGATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

199

Amino Acids

22.82

Weight (kDa)

10.03

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 124 - 173 1.7e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 458, 543, 565
AjnI CCWGG 3 cut(s) 137, 481, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 3 cut(s) 117, 189, 465
AluI AGCT 3 cut(s) 117, 189, 465
Alw21I GWGCWC 1 cut(s) 191
AoxI GGCC 2 cut(s) 350, 431
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 271
BalI TGGCCA 1 cut(s) 352
BanII GRGCYC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 3 cut(s) 139, 483, 556
BfaI CTAG 2 cut(s) 261, 375
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 3 cut(s) 139, 483, 556
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 3 cut(s) 139, 483, 556
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 542
Bpu1102I GCTNAGC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 137, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 271
Bse3DI GCAATG 3 cut(s) 65, 349, 411
BseBI CCWGG 3 cut(s) 139, 483, 556
BseDI CCNNGG 2 cut(s) 137, 555
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 3 cut(s) 65, 349, 411
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 2 cut(s) 352, 433
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 2 cut(s) 352, 433
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 244, 307
Bsp1720I GCTNAGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 352, 433
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 408
BsrDI GCAATG 3 cut(s) 65, 349, 411
BssECI CCNNGG 2 cut(s) 137, 555
BssMI GATC 2 cut(s) 244, 307
Bst2UI CCWGG 3 cut(s) 139, 483, 556
Bst6I CTCTTC 2 cut(s) 68, 384
BstDEI CTNAG 3 cut(s) 80, 190, 271
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 247, 310
BstMBI GATC 2 cut(s) 244, 307
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 3 cut(s) 139, 483, 556
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 3 cut(s) 137, 481, 554
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 542
BstXI CCANNNNNNTGG 1 cut(s) 489
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 352, 433
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 12
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 432
CseI GACGC 1 cut(s) 183
CviAII CATG 3 cut(s) 314, 320, 400
CviJI RGCY 8 cut(s) 79, 117, 189, 352, 433, 465, 554, 569
CviKI_1 RGCY 8 cut(s) 79, 117, 189, 352, 433, 465, 554, 569
DdeI CTNAG 3 cut(s) 80, 190, 271
DpnI GATC 2 cut(s) 246, 309
DpnII GATC 2 cut(s) 244, 307
EaeI YGGCCR 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 68, 384
EarI CTCTTC 2 cut(s) 68, 384
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 137, 481, 554
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 3 cut(s) 317, 323, 403
FaiI YATR 7 cut(s) 293, 315, 321, 401, 490, 519, 572
FatI CATG 3 cut(s) 313, 319, 399
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 2 cut(s) 261, 375
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 2 cut(s) 352, 433
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 177
Hin1II CATG 3 cut(s) 317, 323, 403
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 2 cut(s) 115, 463
HinfI GANTC 3 cut(s) 41, 152, 590
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 46, 90, 499, 595
Hpy188III TCNNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 4 cut(s) 85, 91, 232, 559
HpyCH4V TGCA 3 cut(s) 58, 323, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 3 cut(s) 80, 190, 271
Hsp92II CATG 3 cut(s) 317, 323, 403
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 244, 307
LpnPI CCDG 8 cut(s) 124, 151, 246, 403, 468, 495, 541, 568
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 261, 375
MaeIII GTNAC 1 cut(s) 420
MalI GATC 2 cut(s) 246, 309
MboI GATC 2 cut(s) 244, 307
MboII GAAGA 5 cut(s) 85, 254, 401, 544, 547
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 352
MluCI AATT 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 352
MlyI GAGTC 2 cut(s) 50, 146
MnlI CCTC 8 cut(s) 69, 169, 322, 385, 435, 437, 507, 519
Mox20I TGGCCA 1 cut(s) 352
MscI TGGCCA 1 cut(s) 352
MslI CAYNNNNRTG 2 cut(s) 318, 404
Msp20I TGGCCA 1 cut(s) 352
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 139, 483, 556
MvaI CCWGG 3 cut(s) 139, 483, 556
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 2 cut(s) 244, 307
NlaIII CATG 3 cut(s) 317, 323, 403
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 533
PfeI GAWTC 1 cut(s) 590
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 2 cut(s) 49, 146
PpsI GAGTC 2 cut(s) 49, 146
Psp124BI GAGCTC 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 137, 481, 554
PspEI GGTNACC 1 cut(s) 420
PspGI CCWGG 3 cut(s) 137, 481, 554
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 432
RseI CAYNNNNRTG 2 cut(s) 318, 404
SacI GAGCTC 1 cut(s) 191
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 244, 307
Sau96I GGNCC 1 cut(s) 432
SchI GAGTC 2 cut(s) 50, 146
ScrFI CCNGG 3 cut(s) 139, 483, 556
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 318, 404
Sse9I AATT 1 cut(s) 356
SspMI CTAG 2 cut(s) 261, 375
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 137, 481, 554
TasI AATT 1 cut(s) 356
TfiI GAWTC 1 cut(s) 590
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 218, 388, 422, 534
TspRI CASTG 1 cut(s) 330
XspI CTAG 2 cut(s) 261, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.