Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003602.1

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Forward (+)

6038 .. 7391

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003602.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgggtcatcgtaattctttaaatgcagggtcatctgagaggaaatcctttgatttcacagttatctcctcagatcttgagggatggaaaagcaagggaatagcagtaaaagtagagagtcagagtttgtgctgcaatgggggaacaagaagaggcttagatgtcagaaggagctcagcgtctccaatgaatagtagaaagttatttatcacatcgccggagaaggaagatcggtattacacaactaggggttccttaggtttagatgataatggtaagatgttaggattagatcatcatggtcatgcagtggaggataaaggaagcaatgtttggccaaaattgttcctatcattgtctagtaaagaaaaggaagaggatttcatggcaatgaaagggtgtaagttacctcaaaggcccaagaaaagaggaaagttgcttcaaaaaagcttacatttggtaatgccaggtgtatggttatcagatttgtgccgagagaggtatgaagtgagggagaagaagacttcaaaaaagagagccaggggattgaaggctatgggaagtttggatagtgattcagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

194

Amino Acids

21.75

Weight (kDa)

9.72

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	443, 528, 550
AjnI	CCWGG	2 cut(s)	466, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
AluBI	AGCT	2 cut(s)	174, 450
AluI	AGCT	2 cut(s)	174, 450
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	335, 416
ApeKI	GCWGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	417
AxyI	CCTNAGG	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	468, 541
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	246, 360
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	133
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	468, 541
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	468, 541
BpiI	GAAGAC	1 cut(s)	527
Bpu1102I	GCTNAGC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	540
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	3 cut(s)	142, 334, 396
BseBI	CCWGG	2 cut(s)	468, 541
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	89
BseMI	GCAATG	3 cut(s)	142, 334, 396
BseMII	CTCAG	3 cut(s)	27, 84, 189
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	2 cut(s)	337, 418
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	337, 418
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	73, 229, 292
Bsp1720I	GCTNAGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	337, 418
BspCNI	CTCAG	3 cut(s)	28, 83, 188
BspLI	GGNNCC	1 cut(s)	253
BsrDI	GCAATG	3 cut(s)	142, 334, 396
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	3 cut(s)	73, 229, 292
Bst2UI	CCWGG	2 cut(s)	468, 541
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	145, 369
BstDEI	CTNAG	5 cut(s)	36, 70, 157, 175, 256
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	76, 232, 295
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	73, 229, 292
BstNI	CCWGG	2 cut(s)	468, 541
BstSCI	CCNGG	2 cut(s)	466, 539
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	337, 418
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	168
CviAII	CATG	3 cut(s)	299, 305, 385
CviJI	RGCY	7 cut(s)	156, 174, 337, 418, 450, 539, 554
CviKI_1	RGCY	7 cut(s)	156, 174, 337, 418, 450, 539, 554
DdeI	CTNAG	5 cut(s)	36, 70, 157, 175, 256
DpnI	GATC	3 cut(s)	75, 231, 294
DpnII	GATC	3 cut(s)	73, 229, 292
DraI	TTTAAA	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	145, 369
EarI	CTCTTC	2 cut(s)	145, 369
Ecl136II	GAGCTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	466, 539
EcoT38I	GRGCYC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	3 cut(s)	302, 308, 388
FaiI	YATR	6 cut(s)	300, 306, 386, 475, 504, 557
FatI	CATG	3 cut(s)	298, 304, 384
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	2 cut(s)	246, 360
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	337, 418
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	302, 308, 388
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	2 cut(s)	118, 575
HpaII	CCGG	1 cut(s)	218
Hpy188I	TCNGA	6 cut(s)	37, 73, 123, 167, 484, 580
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	162, 217, 544
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	26, 135, 308
HpyF3I	CTNAG	5 cut(s)	36, 70, 157, 175, 256
Hsp92II	CATG	3 cut(s)	302, 308, 388
Kzo9I	GATC	3 cut(s)	73, 229, 292
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	6 cut(s)	12, 231, 453, 480, 526, 553
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	246, 360
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	3 cut(s)	75, 231, 294
MboI	GATC	3 cut(s)	73, 229, 292
MboII	GAAGA	5 cut(s)	162, 239, 386, 529, 532
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	2 cut(s)	13, 341
MluNI	TGGCCA	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	2 cut(s)	303, 389
Msp20I	TGGCCA	1 cut(s)	337
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	468, 541
MvaI	CCWGG	2 cut(s)	468, 541
NdeII	GATC	3 cut(s)	73, 229, 292
NlaIII	CATG	3 cut(s)	302, 308, 388
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	466, 539
PspGI	CCWGG	2 cut(s)	466, 539
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	303, 389
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	3 cut(s)	73, 229, 292
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	468, 541
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	176, 262, 412, 452, 472, 503
SmiMI	CAYNNNNRTG	2 cut(s)	303, 389
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	13, 341
SspMI	CTAG	2 cut(s)	246, 360
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	466, 539
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	2 cut(s)	13, 341
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	4 cut(s)	203, 373, 407, 519
TspRI	CASTG	1 cut(s)	315
XspI	CTAG	2 cut(s)	246, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.