Rh5BG564200

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006325
Physical Location & Seq
Forward (+)
89406195 .. 89408389
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG564200.1

Sequence Viewer

Length: 483 bp
ATGGAAAAGCAAGGGAATAGCAGTAAAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAAGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACAGCAACCCCAAATCCAGGAAAATCAAAGACTCTCCCTCTCCACTACCACAGCGCATCAACAACAGGAGCTCAGCGTCTCCAATGAATAGTAGAAAGTTATTTATCACATCGCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGTAAGTTACCTCAAAGACCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCTTACATGTAAGTTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

160

Amino Acids

18.33

Weight (kDa)

10.07

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 123 - 157 7.1e-15 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 347
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 1 cut(s) 131
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 3 cut(s) 111, 186, 462
AluI AGCT 3 cut(s) 111, 186, 462
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 268
BalI TGGCCA 1 cut(s) 349
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 258, 372
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 3 cut(s) 59, 346, 408
BseBI CCWGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 3 cut(s) 59, 346, 408
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 476
Bsp143I GATC 2 cut(s) 241, 304
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 265
BsrDI GCAATG 3 cut(s) 59, 346, 408
BsrGI TGTACA 1 cut(s) 476
BssMI GATC 2 cut(s) 241, 304
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 62, 381
BstAUI TGTACA 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 74, 187, 268
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 244, 307
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 241, 304
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 349
BtgZI GCGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 171
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 477
CviAII CATG 5 cut(s) 311, 317, 397, 467, 480
CviJI RGCY 5 cut(s) 73, 111, 186, 349, 462
CviKI_1 RGCY 5 cut(s) 73, 111, 186, 349, 462
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 3 cut(s) 74, 187, 268
DpnI GATC 2 cut(s) 243, 306
DpnII GATC 2 cut(s) 241, 304
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 62, 381
EarI CTCTTC 2 cut(s) 62, 381
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 5 cut(s) 314, 320, 400, 470, 483
FaiI YATR 5 cut(s) 312, 318, 398, 468, 481
FatI CATG 5 cut(s) 310, 316, 396, 466, 479
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 258, 372
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 314, 320, 400, 470, 483
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 109, 460
HinfI GANTC 2 cut(s) 35, 146
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 40, 84
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 79, 85, 229
HpyCH4V TGCA 2 cut(s) 52, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 74, 187, 268
Hsp92II CATG 5 cut(s) 314, 320, 400, 470, 483
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 241, 304
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 118, 145, 166, 243
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 258, 372
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 243, 306
MboI GATC 2 cut(s) 241, 304
MboII GAAGA 3 cut(s) 79, 251, 398
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 2 cut(s) 44, 140
MnlI CCTC 6 cut(s) 63, 163, 319, 382, 432, 434
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 315, 401
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 2 cut(s) 241, 304
NlaIII CATG 5 cut(s) 314, 320, 400, 470, 483
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 1 cut(s) 470
PciI ACATGT 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 43, 140
PpsI GAGTC 2 cut(s) 43, 140
PscI ACATGT 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 265
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 2 cut(s) 315, 401
SacI GAGCTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 241, 304
SchI GAGTC 2 cut(s) 44, 140
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 188
SetI ASST 7 cut(s) 90, 96, 113, 188, 274, 424, 464
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 315, 401
Sse9I AATT 1 cut(s) 353
SspMI CTAG 2 cut(s) 258, 372
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 131
TasI AATT 1 cut(s) 353
TatI WGTACW 1 cut(s) 476
TscAI CASTG 1 cut(s) 327
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 215, 385, 419
TspRI CASTG 1 cut(s) 327
XceI RCATGY 1 cut(s) 470
XspI CTAG 2 cut(s) 258, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.