Rorug05G0486000

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006325
Physical Location & Seq
Reverse (-)
66964678 .. 66967285
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0486000.1

Sequence Viewer

Length: 396 bp
ATGATGTTGGCTGTTGTTGAAGCTGTGCAGAGTCACAGGCATTTGGTGAGTGACGTGTCCGTTTCGGATGAGTCCACGTTTGATTCTTGTGGGTCGGATTGTTGTTCTTTGGAGGGTGTGGATTTGGAGAGTGGGGTTTTGGAGCTGAAGAATAAGGTGGTGGTGCATTTGAGTAAGGTTGAGAGAATTTGCAGAATTTGCCACTTGGGTTTTGAGGGTGGTGGGTTGGACTCTTCTGGGCTTCCAATTGACTTGGGATGTTCTTGCAAGGGTGATTTGGGTGCTGCTCATAAGCAATGTGCTGAGACTTGGTTCAAGATCAAGGGTGATACATCAACGAGGCAAATGGAGCCATCGCCCCAACATCCCCTTCAACACCAGCAGCAGCATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

131

Amino Acids

14.19

Weight (kDa)

5.51

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 64 - 111 5.4e-09 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 186, 195
AcuI CTGAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 20, 316, 374
AjiI CACGTC 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 2 cut(s) 23, 145
AluI AGCT 2 cut(s) 23, 145
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 284, 382, 385
ApoI RAATTY 2 cut(s) 186, 195
AsuHPI GGTGA 3 cut(s) 58, 284, 338
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 299
BisI GCNGC 3 cut(s) 285, 383, 386
BlsI GCNGC 3 cut(s) 286, 384, 387
BmgBI CACGTC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 302
BseGI GGATG 3 cut(s) 73, 263, 364
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 302
BssMI GATC 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 3 cut(s) 73, 263, 364
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 198, 349
BstV1I GCAGC 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 3 cut(s) 73, 263, 364
CaiI CAGNNNCTG 1 cut(s) 391
CviJI RGCY 5 cut(s) 11, 23, 145, 241, 352
CviKI_1 RGCY 5 cut(s) 11, 23, 145, 241, 352
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 167
FaiI YATR 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 285, 383, 386
FokI GGATG 3 cut(s) 80, 270, 351
Fsp4HI GCNGC 3 cut(s) 285, 383, 386
GluI GCNGC 3 cut(s) 285, 383, 386
HinfI GANTC 4 cut(s) 31, 71, 83, 230
HphI GGTGA 3 cut(s) 58, 284, 338
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 2 cut(s) 67, 97
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 54, 77
HpyCH4V TGCA 4 cut(s) 28, 166, 192, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 349
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 2 cut(s) 54, 77
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 142, 349
LpnPI CCDG 3 cut(s) 22, 222, 392
Lsp1109I GCAGC 1 cut(s) 271
MaeII ACGT 2 cut(s) 54, 77
MaeIII GTNAC 2 cut(s) 32, 50
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 2 cut(s) 160, 225
MfeI CAATTG 1 cut(s) 246
MluCI AATT 3 cut(s) 186, 195, 246
MlyI GAGTC 3 cut(s) 40, 80, 224
MmeI TCCRAC 2 cut(s) 75, 207
MnlI CCTC 3 cut(s) 106, 208, 333
MunI CAATTG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 198, 349
NdeII GATC 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 32, 50
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 286, 384, 387
PleI GAGTC 3 cut(s) 39, 79, 224
PpsI GAGTC 3 cut(s) 39, 79, 224
PspN4I GGNNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 391
SatI GCNGC 3 cut(s) 285, 383, 386
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 3 cut(s) 40, 80, 224
SetI ASST 6 cut(s) 25, 57, 80, 147, 159, 180
Sse9I AATT 3 cut(s) 186, 195, 246
TaiI ACGT 2 cut(s) 57, 80
TasI AATT 3 cut(s) 186, 195, 246
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 2 cut(s) 32, 50
TseI GCWGC 3 cut(s) 284, 382, 385
Tsp45I GTSAC 2 cut(s) 32, 50
TspGWI ACGGA 1 cut(s) 49
XapI RAATTY 2 cut(s) 186, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.