FvH4_3g45580

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006325
Physical Location & Seq
Forward (+)
37771909 .. 37775033
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45580.t6

Sequence Viewer

Length: 603 bp
ATGGAGAAGGAAGGGAAGAGCAGTAGAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAGGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACACCAACATCATCACCAAATCCAGGAAAATCAGAGACTCTCCCTCTCCAATACCTCAGCGCATTAACAACAGGAGCTCGACGTCGCCATTGAACAGTAGGAAGTTATTTATCACATCTCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGGTTGGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCGGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGTAAGTTACCTCAAAGGCCCAAGAAAAGAGCAAAGTTGCTACAAAAAAGCTTACATTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCCGGGGTTTGAAGGCTATGGGCGGTTTAGATAGTGATTCGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

201

Amino Acids

23.08

Weight (kDa)

10.11

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 124 - 173 2.6e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 326, 579
AcoI YGGCCR 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 208, 546, 568
AjnI CCWGG 2 cut(s) 137, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
AluBI AGCT 3 cut(s) 111, 192, 468
AluI AGCT 3 cut(s) 111, 192, 468
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 558
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 2 cut(s) 353, 434
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 2 cut(s) 559, 560
AsuHPI GGTGA 2 cut(s) 100, 121
AvaI CYCGRG 1 cut(s) 558
AxyI CCTNAGG 1 cut(s) 274
BalI TGGCCA 1 cut(s) 355
BanII GRGCYC 2 cut(s) 194, 559
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 194
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 139, 486
BcnI CCSGG 2 cut(s) 559, 560
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 264, 378
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 4 cut(s) 139, 486, 559, 560
BmeT110I CYCGRG 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 4 cut(s) 139, 486, 559, 560
BpiI GAAGAC 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 559, 560
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 558, 559
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 3 cut(s) 59, 352, 414
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 2 cut(s) 139, 486
BseDI CCNNGG 2 cut(s) 558, 559
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 3 cut(s) 59, 352, 414
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 355, 436
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 2 cut(s) 236, 559
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 355, 436
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 194, 559
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 2 cut(s) 247, 310
BspACI CCGC 2 cut(s) 326, 579
BspANI GGCC 2 cut(s) 355, 436
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 11
BsrDI GCAATG 3 cut(s) 59, 352, 414
BssECI CCNNGG 2 cut(s) 558, 559
BssMI GATC 2 cut(s) 247, 310
BssNI GRCGYC 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 139, 486
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 3 cut(s) 11, 62, 387
BstACI GRCGYC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 74, 171, 274
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 250, 313
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 247, 310
BstNI CCWGG 2 cut(s) 139, 486
BstSCI CCNGG 4 cut(s) 137, 484, 557, 558
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 274
BsuRI GGCC 2 cut(s) 355, 436
BtsCI GGATG 1 cut(s) 289
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 435
Cfr9I CCCGGG 1 cut(s) 558
CviAII CATG 3 cut(s) 317, 323, 403
CviJI RGCY 8 cut(s) 73, 111, 192, 355, 436, 468, 557, 572
CviKI_1 RGCY 8 cut(s) 73, 111, 192, 355, 436, 468, 557, 572
DdeI CTNAG 3 cut(s) 74, 171, 274
DpnI GATC 2 cut(s) 249, 312
DpnII GATC 2 cut(s) 247, 310
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 3 cut(s) 11, 62, 387
EarI CTCTTC 3 cut(s) 11, 62, 387
Ecl136II GAGCTC 1 cut(s) 192
Eco24I GRGCYC 2 cut(s) 194, 559
Eco53kI GAGCTC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 137, 484
EcoT38I GRGCYC 2 cut(s) 194, 559
FaeI CATG 3 cut(s) 320, 326, 406
FaiI YATR 6 cut(s) 318, 324, 404, 493, 522, 575
FatI CATG 3 cut(s) 316, 322, 402
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 2 cut(s) 194, 559
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 264, 378
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 355, 436
HapII CCGG 2 cut(s) 236, 559
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 320, 326, 406
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 2 cut(s) 109, 466
HinfI GANTC 3 cut(s) 35, 152, 593
HpaII CCGG 2 cut(s) 236, 559
HphI GGTGA 2 cut(s) 100, 121
Hpy188I TCNGA 5 cut(s) 40, 84, 149, 502, 598
Hpy188III TCNNGA 2 cut(s) 97, 236
Hpy99I CGWCG 2 cut(s) 199, 202
HpyAV CCTTC 5 cut(s) 5, 79, 85, 235, 562
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 52
HpyF3I CTNAG 3 cut(s) 74, 171, 274
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 320, 326, 406
HspAI GCGC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 247, 310
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 49, 124, 151, 172, 249, 471, 498, 572
Lsp1109I GCAGC 1 cut(s) 36
MaeI CTAG 2 cut(s) 264, 378
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 423
MalI GATC 2 cut(s) 249, 312
MboI GATC 2 cut(s) 247, 310
MboII GAAGA 6 cut(s) 28, 79, 257, 404, 547, 550
MhlI GDGCHC 2 cut(s) 194, 559
MlsI TGGCCA 1 cut(s) 355
MluCI AATT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 355
MlyI GAGTC 2 cut(s) 44, 146
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 8 cut(s) 63, 169, 180, 325, 388, 438, 510, 522
Mox20I TGGCCA 1 cut(s) 355
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 355
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 2 cut(s) 321, 407
Msp20I TGGCCA 1 cut(s) 355
MspI CCGG 2 cut(s) 236, 559
MspR9I CCNGG 4 cut(s) 139, 486, 559, 560
MvaI CCWGG 2 cut(s) 139, 486
NciI CCSGG 2 cut(s) 559, 560
NdeII GATC 2 cut(s) 247, 310
NlaIII CATG 3 cut(s) 320, 326, 406
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 536
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 43, 146
PpsI GAGTC 2 cut(s) 43, 146
Psp124BI GAGCTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 137, 484
PspGI CCWGG 2 cut(s) 137, 484
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 321, 407
SacI GAGCTC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 247, 310
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 2 cut(s) 44, 146
ScrFI CCNGG 4 cut(s) 139, 486, 559, 560
SduI GDGCHC 2 cut(s) 194, 559
SmaI CCCGGG 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 321, 407
Sse9I AATT 1 cut(s) 359
SsiI CCGC 2 cut(s) 326, 579
SspMI CTAG 2 cut(s) 264, 378
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 4 cut(s) 137, 484, 557, 558
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 359
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 391, 425, 537
TspMI CCCGGG 1 cut(s) 558
XmaI CCCGGG 1 cut(s) 558
XspI CTAG 2 cut(s) 264, 378
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.