RchiOBHm_Chr5g0083771

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006325
Physical Location & Seq
Forward (+)
89474766 .. 89477083
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35788

Sequence Viewer

Length: 597 bp
ATGGAAAAGCAAGGGAATAGCAGTAAAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAAGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACAGCAACCCCAAATCCAGGAAAATCAAAGACTCTCCCTCTCCGCTACCACAGCGCATCAACAACAGGAGCTCAGCGTCTCCAATGAATAGTAGAAAGTTATTTATCACATCGCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGTAAGTTACCTCAAAGGCCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCCTACATTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCAGGGGATTGAAGGCTATGGGAAGTTTGGATAGTGATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

198

Amino Acids

22.74

Weight (kDa)

10.06

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 123 - 172 1.3e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 132, 469
AgsI TTSAA 3 cut(s) 455, 540, 562
AjnI CCWGG 3 cut(s) 131, 478, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 2 cut(s) 111, 186
AluI AGCT 2 cut(s) 111, 186
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 2 cut(s) 347, 428
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 268
BalI TGGCCA 1 cut(s) 349
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 133, 480, 553
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 258, 372
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 133, 480, 553
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 133, 480, 553
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 539
Bpu1102I GCTNAGC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 552
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 469
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 3 cut(s) 59, 346, 408
BseBI CCWGG 3 cut(s) 133, 480, 553
BseDI CCNNGG 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 132, 469
BseMI GCAATG 3 cut(s) 59, 346, 408
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 349, 430
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 132, 469
BsmAI GTCTC 1 cut(s) 198
BsmBI CGTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 349, 430
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 241, 304
Bsp1720I GCTNAGC 1 cut(s) 187
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 349, 430
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 265
BsrDI GCAATG 3 cut(s) 59, 346, 408
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 2 cut(s) 241, 304
Bst2UI CCWGG 3 cut(s) 133, 480, 553
Bst6I CTCTTC 2 cut(s) 62, 381
BstDEI CTNAG 3 cut(s) 74, 187, 268
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 244, 307
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 241, 304
BstMWI GCNNNNNNNGC 2 cut(s) 117, 166
BstNI CCWGG 3 cut(s) 133, 480, 553
BstSCI CCNGG 3 cut(s) 131, 478, 551
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 539
BstXI CCANNNNNNTGG 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 2 cut(s) 349, 430
BtgZI GCGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 1 cut(s) 180
CviAII CATG 3 cut(s) 311, 317, 397
CviJI RGCY 8 cut(s) 73, 111, 186, 349, 430, 462, 551, 566
CviKI_1 RGCY 8 cut(s) 73, 111, 186, 349, 430, 462, 551, 566
DdeI CTNAG 3 cut(s) 74, 187, 268
DpnI GATC 2 cut(s) 243, 306
DpnII GATC 2 cut(s) 241, 304
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 62, 381
EarI CTCTTC 2 cut(s) 62, 381
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 131, 478, 551
EcoT38I GRGCYC 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 3 cut(s) 314, 320, 400
FaiI YATR 6 cut(s) 312, 318, 398, 487, 516, 569
FatI CATG 3 cut(s) 310, 316, 396
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 258, 372
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 349, 430
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 314, 320, 400
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 3 cut(s) 35, 146, 587
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 40, 84, 496, 592
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 4 cut(s) 79, 85, 229, 556
HpyCH4V TGCA 2 cut(s) 52, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 166
HpyF3I CTNAG 3 cut(s) 74, 187, 268
Hsp92II CATG 3 cut(s) 314, 320, 400
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 241, 304
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 8 cut(s) 118, 145, 166, 243, 465, 492, 538, 565
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 258, 372
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 243, 306
MboI GATC 2 cut(s) 241, 304
MboII GAAGA 5 cut(s) 79, 251, 398, 541, 544
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 2 cut(s) 44, 140
MnlI CCTC 8 cut(s) 63, 163, 319, 382, 432, 434, 504, 516
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 315, 401
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 133, 480, 553
MvaI CCWGG 3 cut(s) 133, 480, 553
MwoI GCNNNNNNNGC 2 cut(s) 117, 166
NdeII GATC 2 cut(s) 241, 304
NlaIII CATG 3 cut(s) 314, 320, 400
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 530
PfeI GAWTC 1 cut(s) 587
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 43, 140
PpsI GAGTC 2 cut(s) 43, 140
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 3 cut(s) 131, 478, 551
PspGI CCWGG 3 cut(s) 131, 478, 551
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 315, 401
SacI GAGCTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 241, 304
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 2 cut(s) 44, 140
ScrFI CCNGG 3 cut(s) 133, 480, 553
SduI GDGCHC 1 cut(s) 188
SetI ASST 8 cut(s) 90, 96, 113, 188, 274, 424, 484, 515
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 315, 401
Sse9I AATT 1 cut(s) 353
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 258, 372
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 131, 478, 551
TasI AATT 1 cut(s) 353
TfiI GAWTC 1 cut(s) 587
TscAI CASTG 1 cut(s) 327
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 215, 385, 419, 531
TspRI CASTG 1 cut(s) 327
XspI CTAG 2 cut(s) 258, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.