Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039876.1

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Reverse (-)

1482 .. 1859

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039876.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgatggaaaagaaagggaagagcagtaaaagtagagagtcagagtttgtgcttcaatgggggaacaagaagacgctgagatatcagaaggtgagggtcaagaaagaacgaagctttgacaacaacaccaaatccaggaaaatcagagactctccctctccactaccacagcgcatcaacaagagctcaccgtcgccaatgaatagtagaattaaagttatttatcacatcgtcggagaaggaagatcggtattttccttgggtttagatgataatggtaagatgttaggattagatcatcatggtcatgcagtggaggataaaggaagcaatgtttggccaaaattgttcccatcattgtctagtaaagaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

10.22

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	2 cut(s)	114, 186
AluI	AGCT	2 cut(s)	114, 186
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	103, 180
BalI	TGGCCA	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	245, 295
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	245, 295
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	248, 298
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	245, 295
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	174
CseI	GACGC	1 cut(s)	82
CviAII	CATG	2 cut(s)	302, 308
CviJI	RGCY	3 cut(s)	114, 186, 340
CviKI_1	RGCY	3 cut(s)	114, 186, 340
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	247, 297
DpnII	GATC	2 cut(s)	245, 295
EaeI	YGGCCR	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	305, 311
FaiI	YATR	3 cut(s)	303, 309, 376
FatI	CATG	2 cut(s)	301, 307
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	340
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	305, 311
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	38, 149
HphI	GGTGA	2 cut(s)	103, 180
Hpy188I	TCNGA	4 cut(s)	43, 87, 146, 236
Hpy188III	TCNNGA	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	196, 236
HpyAV	CCTTC	2 cut(s)	82, 233
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	305, 311
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	245, 295
LguI	GCTCTTC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	121, 148
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	363
MalI	GATC	2 cut(s)	247, 297
MboI	GATC	2 cut(s)	245, 295
MboII	GAAGA	3 cut(s)	31, 82, 255
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	340
MluCI	AATT	2 cut(s)	210, 344
MluNI	TGGCCA	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	47, 143
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	87, 166, 310
Mox20I	TGGCCA	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	340
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	245, 295
NlaIII	CATG	2 cut(s)	305, 311
PciSI	GCTCTTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	134
PleI	GAGTC	2 cut(s)	46, 143
PpsI	GAGTC	2 cut(s)	46, 143
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	245, 295
SchI	GAGTC	2 cut(s)	47, 143
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	93, 116, 188
SfaNI	GCATC	1 cut(s)	183
SgeI	CNNG	8 cut(s)	79, 112, 147, 148, 193, 271, 314, 320
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	210, 344
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	192
TasI	AATT	2 cut(s)	210, 344
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	318
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	318
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.