Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Forward (+)

59542 .. 63549

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggccggatttcggttaccggttcccagtcaccggtcgtcggaatccggtcaccggtcgccggagaccgcgccagccactgggtcatctgagaggaaatcctttgatttcacagttatctcctcagatcttgagggatggaaaagcaagggaatagcagtaaaagtagagagtcagagtttgtgctgcaatgggggaacaagaagaggcttagatcgcatcaacaagagctcagcgtctccaatgaatagtagaaagttatttatcacatcgccggagaaggaagatcggtattacacaactaggggttccttaggtttagatgataatggtaagatgttaggattagatcatcatggtcatgcagtggaggataaaggaagcaatgtttggccaaaattgttcctatcattgtctagtaaagaaaaggaagaggatttcatggcaatgaaagggtgtaagttacctcaaagacccaagaaaagaggaaagttgcttcaaaaaagcttacatttggtaatgcctggtgtatggttatcagatttgtgccgagagaggtatgaagtgagggagaagaagacttcaaaaaagagagccaggggattgaaggctatgggaagtttggatagtgattcagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

213

Amino Acids

23.71

Weight (kDa)

9.69

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	71
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	3, 392
AfiI	CCNNNNNNNGG	6 cut(s)	12, 33, 40, 54, 61, 80
AgeI	ACCGGT	3 cut(s)	19, 33, 54
AgsI	TTSAA	3 cut(s)	500, 585, 607
AjnI	CCWGG	2 cut(s)	523, 596
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	2 cut(s)	231, 507
AluI	AGCT	2 cut(s)	231, 507
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	59, 243
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	3, 392
ApeKI	GCWGC	1 cut(s)	186
AsiGI	ACCGGT	3 cut(s)	19, 33, 54
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	23, 44
AxyI	CCTNAGG	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	2 cut(s)	525, 598
BcoDI	GTCTC	2 cut(s)	59, 243
BfaI	CTAG	2 cut(s)	303, 417
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	187
BlpI	GCTNAGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	525, 598
BmiI	GGNNCC	2 cut(s)	24, 310
BmrFI	CCNGG	2 cut(s)	525, 598
BmrI	ACTGGG	2 cut(s)	21, 90
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	2 cut(s)	21, 90
BpiI	GAAGAC	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	4 cut(s)	19, 33, 47, 54
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 33, 40, 54, 61, 80
Bse118I	RCCGGY	3 cut(s)	19, 33, 54
Bse1I	ACTGG	2 cut(s)	27, 85
Bse21I	CCTNAGG	1 cut(s)	313
Bse3DI	GCAATG	3 cut(s)	196, 391, 453
BseBI	CCWGG	2 cut(s)	525, 598
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	6 cut(s)	12, 33, 40, 54, 61, 80
BseMI	GCAATG	3 cut(s)	196, 391, 453
BseMII	CTCAG	3 cut(s)	81, 138, 246
BseNI	ACTGG	2 cut(s)	27, 85
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	38, 59
BshFI	GGCC	2 cut(s)	5, 394
BshTI	ACCGGT	3 cut(s)	19, 33, 54
BsiEI	CGRYCG	2 cut(s)	38, 59
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	7 cut(s)	6, 20, 34, 48, 55, 62, 275
BslI	CCNNNNNNNGG	6 cut(s)	12, 33, 40, 54, 61, 80
BsmAI	GTCTC	2 cut(s)	59, 243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	5, 394
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	127, 214, 286, 349
Bsp1720I	GCTNAGC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	5, 394
BspCNI	CTCAG	3 cut(s)	82, 137, 245
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	24, 310
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	3 cut(s)	196, 391, 453
BsrFI	RCCGGY	3 cut(s)	19, 33, 54
BsrI	ACTGG	2 cut(s)	27, 85
BssAI	RCCGGY	3 cut(s)	19, 33, 54
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	4 cut(s)	127, 214, 286, 349
Bst2UI	CCWGG	2 cut(s)	525, 598
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	199, 426
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	90, 124, 211, 232, 313
BstEII	GGTNACC	2 cut(s)	15, 50
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	130, 217, 289, 352
BstMAI	GTCTC	2 cut(s)	59, 243
BstMBI	GATC	4 cut(s)	127, 214, 286, 349
BstMCI	CGRYCG	2 cut(s)	38, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	525, 598
BstPI	GGTNACC	2 cut(s)	15, 50
BstSCI	CCNGG	2 cut(s)	523, 596
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	5, 394
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	78, 372
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	3 cut(s)	19, 33, 54
CseI	GACGC	1 cut(s)	225
CspAI	ACCGGT	3 cut(s)	19, 33, 54
CviAII	CATG	3 cut(s)	356, 362, 442
CviJI	RGCY	8 cut(s)	5, 77, 210, 231, 394, 507, 596, 611
CviKI_1	RGCY	8 cut(s)	5, 77, 210, 231, 394, 507, 596, 611
DdeI	CTNAG	5 cut(s)	90, 124, 211, 232, 313
DpnI	GATC	4 cut(s)	129, 216, 288, 351
DpnII	GATC	4 cut(s)	127, 214, 286, 349
EaeI	YGGCCR	2 cut(s)	3, 392
Eam1104I	CTCTTC	2 cut(s)	199, 426
EarI	CTCTTC	2 cut(s)	199, 426
Ecl136II	GAGCTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	313
Eco91I	GGTNACC	2 cut(s)	15, 50
EcoICRI	GAGCTC	1 cut(s)	231
EcoO65I	GGTNACC	2 cut(s)	15, 50
EcoRII	CCWGG	2 cut(s)	523, 596
EcoT38I	GRGCYC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	359, 365, 445
FaiI	YATR	6 cut(s)	357, 363, 443, 532, 561, 614
FatI	CATG	3 cut(s)	355, 361, 441
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	303, 417
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	5, 394
HapII	CCGG	7 cut(s)	6, 20, 34, 48, 55, 62, 275
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	359, 365, 445
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	3 cut(s)	44, 172, 632
HpaII	CCGG	7 cut(s)	6, 20, 34, 48, 55, 62, 275
HphI	GGTGA	2 cut(s)	23, 44
Hpy188I	TCNGA	6 cut(s)	43, 91, 127, 177, 541, 637
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	274, 601
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	189, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	5 cut(s)	90, 124, 211, 232, 313
Hsp92II	CATG	3 cut(s)	359, 365, 445
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	127, 214, 286, 349
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	303, 417
MaeIII	GTNAC	4 cut(s)	15, 29, 50, 462
MalI	GATC	4 cut(s)	129, 216, 288, 351
MboI	GATC	4 cut(s)	127, 214, 286, 349
MboII	GAAGA	5 cut(s)	216, 296, 443, 586, 589
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	21
Mox20I	TGGCCA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	394
MslI	CAYNNNNRTG	2 cut(s)	360, 446
Msp20I	TGGCCA	1 cut(s)	394
MspI	CCGG	7 cut(s)	6, 20, 34, 48, 55, 62, 275
MspR9I	CCNGG	2 cut(s)	525, 598
MvaI	CCWGG	2 cut(s)	525, 598
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	4 cut(s)	127, 214, 286, 349
NlaIII	CATG	3 cut(s)	359, 365, 445
NlaIV	GGNNCC	2 cut(s)	24, 310
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	2 cut(s)	29, 50
PfeI	GAWTC	2 cut(s)	44, 632
PflMI	CCANNNNNTGG	1 cut(s)	80
PinAI	ACCGGT	3 cut(s)	19, 33, 54
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	523, 596
PspEI	GGTNACC	2 cut(s)	15, 50
PspGI	CCWGG	2 cut(s)	523, 596
PspN4I	GGNNCC	2 cut(s)	24, 310
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	360, 446
SacI	GAGCTC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	4 cut(s)	127, 214, 286, 349
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	525, 598
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	233, 319, 469, 509, 560
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	360, 446
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	303, 417
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	523, 596
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	44, 632
TscAI	CASTG	2 cut(s)	85, 372
TseFI	GTSAC	2 cut(s)	29, 50
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	2 cut(s)	29, 50
TspDTI	ATGAA	4 cut(s)	260, 430, 464, 576
TspRI	CASTG	2 cut(s)	85, 372
Van91I	CCANNNNNTGG	1 cut(s)	80
XspI	CTAG	2 cut(s)	303, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.