Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Reverse (-)

269681 .. 270900

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATAAGAGTTCAGCTTCGCCAATGAATAGTAGGAAGCAATTTGTTACTTCACCTGAGAAGGAAGATCGGTACTACACAACAAGGGGTTCATTAGGGTTGGACGAGAACGGGAAGATGTTAGGATTAGATAATCCTGGTCCTGCAAGGGATGACAAAGGAAGCCGTGCTTGGCCAAGGTTATTTCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCTATGAAAGGGTGTAAGCTACCTCAAAGGCCCAAGAAAAGAGCAAAATTGCTCCAGAAAAGCCTACTTTTGGTGATGCCCGGTGTATGGTTATCAGATTTGTGCCAGGAGCGGTATGAAGTCAGGGAGAAGAAGACTTCAAAGAAGAGGCCCAGAGGATTGAAGGCCATGGGAGGTATCGATAGCGAATCAGACAGAGAGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

144

Amino Acids

16.27

Weight (kDa)

9.72

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	337
AciI	CCGC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	173
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	295, 312
AgsI	TTSAA	2 cut(s)	366, 388
AjiI	CACGTC	1 cut(s)	429
AjnI	CCWGG	2 cut(s)	136, 330
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	2 cut(s)	17, 244
AluI	AGCT	2 cut(s)	17, 244
Alw26I	GTCTC	1 cut(s)	419
AoxI	GGCC	4 cut(s)	173, 254, 374, 390
AspS9I	GGNCC	3 cut(s)	140, 255, 375
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	45, 310
AvaII	GGWCC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	138, 332
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	138, 306, 332
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	429
BmgT120I	GGNCC	3 cut(s)	140, 255, 375
BmrFI	CCNGG	3 cut(s)	138, 306, 332
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	176, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 312
BseBI	CCWGG	2 cut(s)	138, 332
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	176, 393
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	295, 312
BseMII	CTCAG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	175, 256, 376, 392
BshVI	ATCGAT	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	295, 312
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsnI	GGCC	4 cut(s)	175, 256, 376, 392
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	4 cut(s)	175, 256, 376, 392
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	176, 393
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	176, 393
Bst2UI	CCWGG	2 cut(s)	138, 332
Bst6I	CTCTTC	2 cut(s)	207, 365
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	138, 332
BstSCI	CCNGG	3 cut(s)	136, 304, 330
BstV2I	GAAGAC	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	175, 256, 376, 392
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	140, 255, 375
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	223, 394
CviJI	RGCY	9 cut(s)	17, 165, 175, 227, 244, 256, 288, 376, 392
CviKI_1	RGCY	9 cut(s)	17, 165, 175, 227, 244, 256, 288, 376, 392
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	207, 365
EarI	CTCTTC	2 cut(s)	207, 365
Eco130I	CCWWGG	2 cut(s)	176, 393
Eco47I	GGWCC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	136, 330
EcoT14I	CCWWGG	2 cut(s)	176, 393
ErhI	CCWWGG	2 cut(s)	176, 393
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	2 cut(s)	226, 397
FaiI	YATR	5 cut(s)	224, 230, 313, 342, 395
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	2 cut(s)	222, 393
FokI	GGATG	1 cut(s)	164
FspBI	CTAG	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	175, 256, 376, 392
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	2 cut(s)	226, 397
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	45, 310
Hpy188I	TCNGA	2 cut(s)	322, 418
Hpy188III	TCNNGA	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	55, 382
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	226, 397
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	282, 334
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	1 cut(s)	67
MboII	GAAGA	6 cut(s)	77, 127, 224, 367, 370, 382
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	2 cut(s)	41, 272
MluNI	TGGCCA	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	208, 258, 366, 374, 392
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	138, 306, 332
MvaI	CCWGG	2 cut(s)	138, 332
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	226, 397
PfeI	GAWTC	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	136, 330
PspGI	CCWGG	2 cut(s)	136, 330
PspPI	GGNCC	3 cut(s)	140, 255, 375
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	3 cut(s)	140, 255, 375
ScrFI	CCNGG	3 cut(s)	138, 306, 332
SetI	ASST	7 cut(s)	19, 58, 182, 246, 250, 403, 431
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	41, 272
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	136, 304, 330
StyI	CCWWGG	2 cut(s)	176, 393
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	41, 272
TfiI	GAWTC	1 cut(s)	413
TspDTI	ATGAA	5 cut(s)	41, 81, 211, 245, 357
VpaK11BI	GGWCC	1 cut(s)	140
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.