Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Reverse (-)

316103 .. 317608

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAAAGGAAGGGAAAACCTCTAAAGCCACAGAGTCGGACTTTTTGCTGCAATGGGGGAACAGAAAGAGGCTTAGATATTCAAACTTGAATAAGGACGCAACCTTGAGCAACAACAAAAAACCGTCGGACTGTTTAAGGAAGAAGAAAATCACTTCTCGGGCCGCCGATAAAGAGTCTCCGGCTCCTCATCCACTGCCCAATAGCATGGACAAGAGTTCAGCTTCGCCAATGAATAGTAGGAAGCTATTTGTTACTTCACCGGAGAAGGAAGATCGGTACTACACAACGAGGGGTTCATTAGGGTTGGACGAGAATGGGAAGGTGTTAGGATTAGATTATCCTGGTTCTGCAAGGGATGACAAAGGAAGCCATGCTTGGCCAAGGTTATTTCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCTATGAAAGGGTGTAAGCTACCTCAAAGGCCCAAGAAAAGAGCAAAATTGCTCCAGAAAAGCCTACTTTTGATTATGCCCGGTGTATGGTTATCGGATTTGTGCCAGGAGCGGTATGAAGTGAGGGAGAAGAAGACTCCAAAGAAGAGACCCAGAGGATTGAAGGCCATGGGAGGTATCGATGGCGAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

210

Amino Acids

23.67

Weight (kDa)

9.81

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	544
AciI	CCGC	2 cut(s)	165, 544
AcoI	YGGCCR	1 cut(s)	380
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	3 cut(s)	84, 91, 595
AjnI	CCWGG	2 cut(s)	343, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	224, 247, 451
AluI	AGCT	3 cut(s)	224, 247, 451
Alw26I	GTCTC	2 cut(s)	183, 574
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	4 cut(s)	162, 380, 461, 597
ApeKI	GCWGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	162, 462
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	608
BciT130I	CCWGG	2 cut(s)	345, 539
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	183, 574
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	50, 165
BlsI	GCNGC	2 cut(s)	51, 166
Bme1390I	CCNGG	3 cut(s)	345, 513, 539
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	162, 462
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	345, 513, 539
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	383, 600
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	345, 539
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	383, 600
BseGI	GGATG	2 cut(s)	190, 364
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	4 cut(s)	164, 382, 463, 599
BshVI	ATCGAT	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	182, 263, 513
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	2 cut(s)	183, 574
BsnI	GGCC	4 cut(s)	164, 382, 463, 599
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	2 cut(s)	165, 544
BspANI	GGCC	4 cut(s)	164, 382, 463, 599
BspDI	ATCGAT	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	383, 600
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	383, 600
Bst2UI	CCWGG	2 cut(s)	345, 539
Bst4CI	ACNGT	2 cut(s)	126, 134
Bst6I	CTCTTC	2 cut(s)	414, 572
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	190, 364
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	183, 574
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	345, 539
BstSCI	CCNGG	3 cut(s)	343, 511, 537
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	572
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	612
BsuRI	GGCC	4 cut(s)	164, 382, 463, 599
BsuTUI	ATCGAT	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	190, 364
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	162, 462
ClaI	ATCGAT	1 cut(s)	612
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	208, 374, 430, 601
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	414, 572
EarI	CTCTTC	2 cut(s)	414, 572
Eco130I	CCWWGG	2 cut(s)	383, 600
Eco31I	GGTCTC	1 cut(s)	574
Eco88I	CYCGRG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	343, 537
EcoT14I	CCWWGG	2 cut(s)	383, 600
ErhI	CCWWGG	2 cut(s)	383, 600
FaeI	CATG	4 cut(s)	211, 377, 433, 604
FaiI	YATR	8 cut(s)	209, 375, 431, 437, 509, 520, 549, 602
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FatI	CATG	4 cut(s)	207, 373, 429, 600
Fnu4HI	GCNGC	2 cut(s)	50, 165
FokI	GGATG	2 cut(s)	177, 371
Fsp4HI	GCNGC	2 cut(s)	50, 165
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	50, 165
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	4 cut(s)	164, 382, 463, 599
HapII	CCGG	3 cut(s)	182, 263, 513
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	211, 377, 433, 604
HinfI	GANTC	4 cut(s)	35, 176, 568, 620
HpaII	CCGG	3 cut(s)	182, 263, 513
HphI	GGTGA	1 cut(s)	252
Hpy188I	TCNGA	4 cut(s)	40, 130, 529, 625
Hpy188III	TCNNGA	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	5, 262, 316, 589
HpyCH4III	ACNGT	2 cut(s)	126, 134
HpyCH4V	TGCA	2 cut(s)	52, 353
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	211, 377, 433, 604
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	3 cut(s)	190, 489, 541
LpnPI	CCDG	9 cut(s)	195, 276, 330, 357, 500, 524, 526, 551, 598
Lsp1109I	GCAGC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	276
MbiI	CCGCTC	1 cut(s)	544
MboI	GATC	1 cut(s)	274
MboII	GAAGA	7 cut(s)	154, 157, 284, 431, 574, 577, 589
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	3 cut(s)	44, 185, 562
MmeI	TCCRAC	3 cut(s)	18, 108, 288
MnlI	CCTC	9 cut(s)	31, 63, 198, 285, 415, 465, 549, 581, 599
Mox20I	TGGCCA	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	382
MspI	CCGG	3 cut(s)	182, 263, 513
MspR9I	CCNGG	3 cut(s)	345, 513, 539
MvaI	CCWGG	2 cut(s)	345, 539
NciI	CCSGG	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	4 cut(s)	211, 377, 433, 604
NlaIV	GGNNCC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	51, 166
PleI	GAGTC	3 cut(s)	43, 184, 562
PpsI	GAGTC	3 cut(s)	43, 184, 562
Psp6I	CCWGG	2 cut(s)	343, 537
PspGI	CCWGG	2 cut(s)	343, 537
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	162, 462
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	50, 165
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	162, 462
SchI	GAGTC	3 cut(s)	44, 185, 562
ScrFI	CCNGG	3 cut(s)	345, 513, 539
SetI	ASST	9 cut(s)	23, 107, 226, 249, 327, 389, 453, 457, 610
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	165, 544
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	343, 511, 537
StyI	CCWWGG	2 cut(s)	383, 600
TaaI	ACNGT	2 cut(s)	126, 134
TaqI	TCGA	1 cut(s)	612
TasI	AATT	1 cut(s)	479
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	248, 288, 418, 452, 564
TspRI	CASTG	1 cut(s)	201
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.