Rh5CG586100

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006325
Physical Location & Seq
Forward (+)
83127424 .. 83129618
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG586100.1

Sequence Viewer

Length: 462 bp
ATGGTGCTTATCATTTTTCTAAGTGATTGTGTTTTGTTTGATAGCAGGAGCTCAGCGTCTCCAATGAATAGTAGAAAGTTATTTATCACATCGCCGGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGTAAGTTACCTCAAAGACCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCTTACATTTGGTAATGCCTGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCAGGGGATTGAAGGCTATGGGAAGTTTGGATAGTGATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

153

Amino Acids

17.39

Weight (kDa)

9.46

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 78 - 127 7.9e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 212
AgsI TTSAA 3 cut(s) 320, 405, 427
AjnI CCWGG 2 cut(s) 343, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 193, 225
AluBI AGCT 2 cut(s) 51, 327
AluI AGCT 2 cut(s) 51, 327
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 133
BalI TGGCCA 1 cut(s) 214
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 345, 418
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 123, 237
BlpI GCTNAGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 345, 418
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 345, 418
BpiI GAAGAC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 417
Bse21I CCTNAGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 211, 273
BseBI CCWGG 2 cut(s) 345, 418
BseDI CCNNGG 1 cut(s) 417
BseMI GCAATG 2 cut(s) 211, 273
BseMII CTCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 106, 169
Bsp1720I GCTNAGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 130
BsrDI GCAATG 2 cut(s) 211, 273
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 106, 169
Bst2UI CCWGG 2 cut(s) 345, 418
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 20, 52, 133
BstKTI GATC 2 cut(s) 109, 172
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 106, 169
BstNI CCWGG 2 cut(s) 345, 418
BstSCI CCNGG 2 cut(s) 343, 416
BstV2I GAAGAC 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
CseI GACGC 1 cut(s) 45
CviAII CATG 3 cut(s) 176, 182, 262
CviJI RGCY 5 cut(s) 51, 214, 327, 416, 431
CviKI_1 RGCY 5 cut(s) 51, 214, 327, 416, 431
DdeI CTNAG 3 cut(s) 20, 52, 133
DpnI GATC 2 cut(s) 108, 171
DpnII GATC 2 cut(s) 106, 169
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 343, 416
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 3 cut(s) 179, 185, 265
FaiI YATR 6 cut(s) 177, 183, 263, 352, 381, 434
FatI CATG 3 cut(s) 175, 181, 261
FriOI GRGCYC 1 cut(s) 53
FspBI CTAG 2 cut(s) 123, 237
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 179, 185, 265
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 361, 457
HpyAV CCTTC 2 cut(s) 94, 421
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 3 cut(s) 20, 52, 133
Hsp92II CATG 3 cut(s) 179, 185, 265
Kzo9I GATC 2 cut(s) 106, 169
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 31, 108, 330, 357, 403, 430
MaeI CTAG 2 cut(s) 123, 237
MaeIII GTNAC 1 cut(s) 282
MalI GATC 2 cut(s) 108, 171
MboI GATC 2 cut(s) 106, 169
MboII GAAGA 4 cut(s) 116, 263, 406, 409
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 214
MnlI CCTC 6 cut(s) 184, 247, 297, 299, 369, 381
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
MslI CAYNNNNRTG 2 cut(s) 180, 266
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 345, 418
MvaI CCWGG 2 cut(s) 345, 418
NdeII GATC 2 cut(s) 106, 169
NlaIII CATG 3 cut(s) 179, 185, 265
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 395
PfeI GAWTC 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 343, 416
PspGI CCWGG 2 cut(s) 343, 416
PspN4I GGNNCC 1 cut(s) 130
RseI CAYNNNNRTG 2 cut(s) 180, 266
SacI GAGCTC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 106, 169
ScrFI CCNGG 2 cut(s) 345, 418
SduI GDGCHC 1 cut(s) 53
SetI ASST 5 cut(s) 53, 139, 289, 329, 380
SmiMI CAYNNNNRTG 2 cut(s) 180, 266
Sse9I AATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 123, 237
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 343, 416
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 452
TscAI CASTG 1 cut(s) 192
TspDTI ATGAA 4 cut(s) 80, 250, 284, 396
TspRI CASTG 1 cut(s) 192
XspI CTAG 2 cut(s) 123, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.