Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006325

Physical Location & Seq

Genomic Coordinates Reverse (-)

373808 .. 376362

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAAAAGAAGGGAAAAGCCAAAGAGAGTCTAAAGCTACAGAGTCAGACTTTGTATTGCAATGGGGGAACAGAAAGAGGCTTAGATGTGCGAAGGTGAAGAAAGACCAAAGCTTGAGCAACACCAAATCGTCAGACTGTTTGAGGAAGAAGAAAATAACTTCTCGTGCCGAGAAAGAGTCTCCCGCTCCACTACCCCAGCGCATCGACAAGAATTCAGCTTCGCCGATGAATAGTGGGAAGTTATTTGTTACTTCACCGGAGAAGGAAGATCGGTATTACACAACAAGGGGTTCAATAGGCTTGGATGATAATGGGAAGGTGTTAGGATTAGATTATCCTGGTCATGCAAGGGATGACAAAGGAGGCCATGTGTGGCCAAGGTTGTTTCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCTATGAAAGGGTGTAAGCTACCTCAAAGGCCCAAGAAAAGAGCAAAGCTGCTCCAAAAAAGCTTACTTTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCAGGAGAGGTATGAAGTGAGGGAGAAGAAGGCTTCAAAGAAGAGACCCAGAGGATTGAAGGCCATGGGAAGTATGGATAGTGATTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1639

Protein Analysis

209

Amino Acids

23.62

Weight (kDa)

9.81

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55340 AT1G55340
fragaria_vesca	FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580 FvH4_3g45580
malus_domestica	MD03G1003700.v1.1 MD11G1003600.v1.1
prunus_persica	Prupe.6G003400_v2.0.a1
pyrus_communis	pycom03g00380 pycom11g00340
rosa_chinensis	RchiOBHm_Chr5g0083771
rosa_laevigata	RLG00000037050
rosa_multiflora	Rmu_sc0001287.1_g000009 Rmu_sc0003602.1_g000001 Rmu_sc0039876.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000800
rosa_rugosa	Rorug05G0485900 Rorug05G0486000 Rorug05G0486000
rosa_samantha	Rh5AG538900 Rh5BG564200 Rh5CG586100 Rh5DG572700
rosa_wichuraiana	Rw5G050110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	297, 570, 592
AjnI	CCWGG	3 cut(s)	340, 508, 534
AluBI	AGCT	6 cut(s)	38, 114, 221, 448, 478, 492
AluI	AGCT	6 cut(s)	38, 114, 221, 448, 478, 492
Alw26I	GTCTC	2 cut(s)	186, 571
AoxI	GGCC	4 cut(s)	367, 377, 458, 594
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	109, 249
BalI	TGGCCA	1 cut(s)	379
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	465
BciT130I	CCWGG	3 cut(s)	342, 510, 536
BcoDI	GTCTC	2 cut(s)	186, 571
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	3 cut(s)	342, 510, 536
BmgT120I	GGNCC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	342, 510, 536
BmsI	GCATC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	380, 597
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	342, 510, 536
BseDI	CCNNGG	2 cut(s)	380, 597
BseGI	GGATG	2 cut(s)	313, 361
BseMI	GCAATG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	4 cut(s)	369, 379, 460, 596
BsiSI	CCGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	186, 571
BsnI	GGCC	4 cut(s)	369, 379, 460, 596
Bso31I	GGTCTC	1 cut(s)	571
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	4 cut(s)	369, 379, 460, 596
BspTNI	GGTCTC	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	380, 597
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	2 cut(s)	380, 597
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	3 cut(s)	342, 510, 536
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	411, 569
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	313, 361
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	186, 571
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	3 cut(s)	342, 510, 536
BstSCI	CCNGG	3 cut(s)	340, 508, 534
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	369, 379, 460, 596
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	313, 361
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	459
CviAII	CATG	4 cut(s)	347, 371, 427, 598
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	411, 569
EarI	CTCTTC	2 cut(s)	411, 569
Eco130I	CCWWGG	2 cut(s)	380, 597
Eco31I	GGTCTC	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	340, 508, 534
EcoT14I	CCWWGG	2 cut(s)	380, 597
ErhI	CCWWGG	2 cut(s)	380, 597
FaeI	CATG	4 cut(s)	350, 374, 430, 601
FaiI	YATR	8 cut(s)	348, 372, 428, 434, 517, 546, 599, 608
FatI	CATG	4 cut(s)	346, 370, 426, 597
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	320, 368
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	479
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	369, 379, 460, 596
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	350, 374, 430, 601
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HindIII	AAGCTT	2 cut(s)	112, 490
HinfI	GANTC	4 cut(s)	29, 44, 179, 617
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	2 cut(s)	109, 249
Hpy188I	TCNGA	4 cut(s)	49, 136, 526, 622
HpyAV	CCTTC	6 cut(s)	5, 88, 259, 313, 556, 586
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	61, 350
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	350, 374, 430, 601
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	193, 486
LpnPI	CCDG	9 cut(s)	212, 273, 327, 354, 495, 521, 522, 548, 595
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	273
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	1 cut(s)	271
MboII	GAAGA	7 cut(s)	112, 160, 163, 281, 428, 571, 586
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	3 cut(s)	38, 53, 188
MnlI	CCTC	8 cut(s)	72, 138, 359, 412, 462, 534, 546, 578
Mox20I	TGGCCA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	379
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	379
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	3 cut(s)	342, 510, 536
MvaI	CCWGG	3 cut(s)	342, 510, 536
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	4 cut(s)	350, 374, 430, 601
NmeAIII	GCCGAG	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	3 cut(s)	37, 52, 187
PpsI	GAGTC	3 cut(s)	37, 52, 187
Psp6I	CCWGG	3 cut(s)	340, 508, 534
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	3 cut(s)	340, 508, 534
PspPI	GGNCC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	431
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	3 cut(s)	38, 53, 188
ScrFI	CCNGG	3 cut(s)	342, 510, 536
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	3 cut(s)	340, 508, 534
StyI	CCWWGG	2 cut(s)	380, 597
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	617
TseI	GCWGC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	245, 415, 449, 561
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.