RLG00000037050

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006325
Physical Location & Seq
Forward (+)
87900614 .. 87901812
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037050

Sequence Viewer

Length: 594 bp
ATGGAAAAGGAAGGGAAGAGCAGTAAAAGTAGAGAGTCAGAGTTTGTGCTGCAATGGGGGAACAAGAAGAGGCTTAGATGTCAGAAGGTGAAGGTCAAGAAAGAACGAAGCTTTGACAGCAACACCAAATCCAGGAAAATCAAAGACTCTCCCTCTCCACTACCACAGCGCATCAACAAGAGCTCAGCGTCTCCAATGAATAGTAGAAAGTTATTTATCACATCGCCAGAGAAGGAAGATCGGTATTACACAACTAGGGGTTCCTTAGGTTTAGATGATAATGGTAAGATGTTAGGATTAGATCATCATGGTCATGCAGTGGAGGATAAAGGAAGCAATGTTTGGCCAAAATTGTTCCTATCATTGTCTAGTAAAGAAAAGGAAGAGGATTTCATGGCAATGAAAGGGTGTAAGTTACCTCAAAGGCCCAAGAAAAGAGGAAAGTTGCTTCAAAAAAGCTTACATTTGGTAATGCCAGGTGTATGGTTATCAGATTTGTGCCGAGAGAGGTATGAAGTGAGGGAGAAGAAGACTTCAAAAAAGAGAGCCAGGGGATTGAAGGCTATGGGAAGTTTGGATAGTGATTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

198

Amino Acids

22.61

Weight (kDa)

10.01

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 122 - 171 1.3e-22 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 452, 537, 559
AjnI CCWGG 3 cut(s) 131, 475, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 3 cut(s) 111, 183, 459
AluI AGCT 3 cut(s) 111, 183, 459
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 195
AoxI GGCC 2 cut(s) 344, 425
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 265
BalI TGGCCA 1 cut(s) 346
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 133, 477, 550
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 2 cut(s) 255, 369
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 3 cut(s) 133, 477, 550
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 3 cut(s) 133, 477, 550
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 265
Bse3DI GCAATG 3 cut(s) 59, 343, 405
BseBI CCWGG 3 cut(s) 133, 477, 550
BseDI CCNNGG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 3 cut(s) 59, 343, 405
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 346, 427
BsiHKAI GWGCWC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
BsnI GGCC 2 cut(s) 346, 427
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 238, 301
Bsp1720I GCTNAGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 346, 427
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 11
BsrDI GCAATG 3 cut(s) 59, 343, 405
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 238, 301
Bst2UI CCWGG 3 cut(s) 133, 477, 550
Bst6I CTCTTC 3 cut(s) 11, 62, 378
BstDEI CTNAG 3 cut(s) 74, 184, 265
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 241, 304
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 238, 301
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 3 cut(s) 133, 477, 550
BstSCI CCNGG 3 cut(s) 131, 475, 548
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 536
BstXI CCANNNNNNTGG 1 cut(s) 483
Bsu36I CCTNAGG 1 cut(s) 265
BsuRI GGCC 2 cut(s) 346, 427
BtgZI GCGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 426
CseI GACGC 1 cut(s) 177
CviAII CATG 3 cut(s) 308, 314, 394
CviJI RGCY 8 cut(s) 73, 111, 183, 346, 427, 459, 548, 563
CviKI_1 RGCY 8 cut(s) 73, 111, 183, 346, 427, 459, 548, 563
DdeI CTNAG 3 cut(s) 74, 184, 265
DpnI GATC 2 cut(s) 240, 303
DpnII GATC 2 cut(s) 238, 301
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 3 cut(s) 11, 62, 378
EarI CTCTTC 3 cut(s) 11, 62, 378
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 3 cut(s) 131, 475, 548
EcoT38I GRGCYC 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 3 cut(s) 311, 317, 397
FaiI YATR 6 cut(s) 309, 315, 395, 484, 513, 566
FatI CATG 3 cut(s) 307, 313, 393
Fnu4HI GCNGC 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 255, 369
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 346, 427
HgaI GACGC 1 cut(s) 177
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 311, 317, 397
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HindIII AAGCTT 2 cut(s) 109, 457
HinfI GANTC 3 cut(s) 35, 146, 584
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 40, 84, 493, 589
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 5 cut(s) 5, 79, 85, 226, 553
HpyCH4V TGCA 2 cut(s) 52, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 74, 184, 265
Hsp92II CATG 3 cut(s) 311, 317, 397
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 238, 301
LguI GCTCTTC 1 cut(s) 11
LpnPI CCDG 7 cut(s) 118, 145, 240, 462, 489, 535, 562
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 255, 369
MaeIII GTNAC 1 cut(s) 414
MalI GATC 2 cut(s) 240, 303
MboI GATC 2 cut(s) 238, 301
MboII GAAGA 6 cut(s) 28, 79, 248, 395, 538, 541
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 1 cut(s) 350
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 2 cut(s) 44, 140
MnlI CCTC 8 cut(s) 63, 163, 316, 379, 429, 431, 501, 513
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MslI CAYNNNNRTG 2 cut(s) 312, 398
Msp20I TGGCCA 1 cut(s) 346
MspR9I CCNGG 3 cut(s) 133, 477, 550
MvaI CCWGG 3 cut(s) 133, 477, 550
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 2 cut(s) 238, 301
NlaIII CATG 3 cut(s) 311, 317, 397
NlaIV GGNNCC 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 2 cut(s) 43, 140
PpsI GAGTC 2 cut(s) 43, 140
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 131, 475, 548
PspGI CCWGG 3 cut(s) 131, 475, 548
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 426
RseI CAYNNNNRTG 2 cut(s) 312, 398
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 238, 301
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 2 cut(s) 44, 140
ScrFI CCNGG 3 cut(s) 133, 477, 550
SduI GDGCHC 1 cut(s) 185
SetI ASST 9 cut(s) 90, 96, 113, 185, 271, 421, 461, 481, 512
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 2 cut(s) 312, 398
Sse9I AATT 1 cut(s) 350
SspMI CTAG 2 cut(s) 255, 369
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 131, 475, 548
TasI AATT 1 cut(s) 350
TfiI GAWTC 1 cut(s) 584
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 212, 382, 416, 528
TspRI CASTG 1 cut(s) 324
XspI CTAG 2 cut(s) 255, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.