Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002738

Physical Location & Seq

Genomic Coordinates Reverse (-)

20867559 .. 20870338

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTGTTGCTTGCGGCAGTTTCTGCATCCATCTGAAGATGATTCTTATAGGTTGGTTAGGTTTCTGGTTGAGAGGCTTTCGGAGATTAGTGAAGGAAGAAAAACTTTGACGGCTGGTGATATAGCTAGCAGGCCAAAGATGGAGACTTTCAGAGATATTTCAGATGACATGATGGTGAATGAGGACAAGGATGAGACTTTCGATATGCATATACAGAAGGTTGAAGCTGTCTTAAAAGATCTCACAATGACTAGTGAAAAATCTCATTCATCTGACTCTCTCGCAAAAAATACCTCAGCCAATGTTGACTTCTCCTCCCAAAAGACAGATGATCCTGTTACTGATGTACGTTCTGATCTTTCTTTGAGAGATTCATCTAGATGTGAAGAAAATTCTTATGAAGACCCGTTTGAGACAAATTATGAGACTGTTGAGTTACAGAATCAACATGATGTACTCTTGGAGGAACTGGAATCTGGATCTTCACAGCTATGCAGTCTTGAAAGCGAGCTGGAGTTGTTGCAGATGGCTGCGGAGAGGTTATTGGATGACAAAAAGCCGGGTGGGTCATATCTCGAACAGCTTAATCAACAACTAGTGGTCAAAAGGTGTAATATCATGGATCTTAAAAAGCAATGGGACGATGTAAGGCTGACTCTGGAAACTAAAAAGCTACTTCTCTTGGACCAACTTCATGTGGAGGAGCCAGAGGCTAAAGAGAAATTCCATAAGTTGAGAAAGACTGAACTGGATTTACAATCTCTCTCATCAGAAATTCAAAAGAGGGAAGATGAACGGTGTAACCTTTACAATGAACTTGAGAGGCAGCCAAAAGCAGCGCCGAGGAAATCATATATACATGGGATTAAAGAAATAACAAAAAATAGCCGTAAACTGGACACTGATATTCAGAGGATTTCAGGGGAGACCAGGGAGCTACAATTAGAGAAAAACTCAATCCAAGAACGCCTGCACCGATCATATGCTGTTGTGGATGAAATGGTTACAAGGGAAGTGAAGAAAGACCCAGCAGTACGACAAGTCTACAAGCTACTGACCAGTATTCACAGTATATTTGAGCAAATCTCTGAGAAAATTCTCATGACTGATCGGTTTAGAAGAGAAACAGTTGATTATGAAAAGAAGTTGGGGTCCATCACAGCTCGAGGCATGAGTTTGGAGAAATTACAAGCCGATCTGGATGCCATAAGGAAAGAAAACGAAAGCCTTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF812

Protein Analysis

412

Amino Acids

47.96

Weight (kDa)

5.21

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC22_N	PF21674	3 - 108	6.4e-32	CCDC22 protein N-terminal domain
CCDC22_CC	PF05667	222 - 468	1.2e-32	CCDC22 protein coiled-coil region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55830 AT1G55830 AT1G55830
fragaria_vesca	FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411 FvH4_3g42411
malus_domestica	MD03G1032000.v1.1 MD03G1032400.v1.1 MD11G1036100.v1.1
prunus_persica	Prupe.6G026900_v2.0.a1 Prupe.6G026900_v2.0.a1
pyrus_communis	pycom11g02980
rosa_chinensis	RchiOBHm_Chr5g0075911
rosa_laevigata	RLG00000009357 RLG00000036601
rosa_multiflora	Rmu_sc0002652.1_g000017
rosa_roxburghii	Rroxscaffold_1G00005770 Rroxscaffold_3G00229030 Rroxscaffold_4G00290220 Rroxscaffold_4G00331910
rosa_rugosa	Rorug01G0374500 Rorug05G0443700 Rorug05G0443800 Rorug05G0443900
rosa_samantha	Rh1BG347000 Rh2DG366700 Rh5AG500500 Rh5BG521600 Rh5CG545600 Rh5DG534400
rosa_wichuraiana	Rw5G046450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1044
AciI	CCGC	2 cut(s)	13, 533
AclWI	GGATC	3 cut(s)	326, 487, 630
AcsI	RAATTY	4 cut(s)	391, 722, 774, 1095
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	348, 456, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflII	CTTAAG	1 cut(s)	1229
AgsI	TTSAA	3 cut(s)	224, 503, 779
AhlI	ACTAGT	2 cut(s)	251, 595
AjnI	CCWGG	1 cut(s)	929
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	9 cut(s)	125, 227, 490, 511, 583, 673, 937, 1051, 1163
AluI	AGCT	9 cut(s)	125, 227, 490, 511, 583, 673, 937, 1051, 1163
Alw26I	GTCTC	5 cut(s)	137, 188, 407, 419, 920
AlwI	GGATC	3 cut(s)	326, 487, 630
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	1164
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	530, 826, 836
ApoI	RAATTY	4 cut(s)	391, 722, 774, 1095
AspLEI	GCGC	1 cut(s)	841
AspS9I	GGNCC	2 cut(s)	685, 1152
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	128, 187
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	1164
AvaII	GGWCC	2 cut(s)	685, 1152
BbsI	GAAGAC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	517, 838, 848
BccI	CCATC	5 cut(s)	37, 133, 166, 520, 1163
BceAI	ACGGC	2 cut(s)	126, 873
BcgI	CGANNNNNNTGC	2 cut(s)	1184, 1218
BciT130I	CCWGG	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	5 cut(s)	137, 188, 407, 419, 920
BcuI	ACTAGT	2 cut(s)	251, 595
BfaI	CTAG	4 cut(s)	126, 252, 378, 596
BfoI	RGCGCY	1 cut(s)	842
BfrI	CTTAAG	1 cut(s)	1229
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	14, 531, 827, 837
BlsI	GCNGC	4 cut(s)	15, 532, 828, 838
Bme1390I	CCNGG	2 cut(s)	561, 931
Bme18I	GGWCC	2 cut(s)	685, 1152
BmeT110I	CYCGRG	1 cut(s)	1164
BmgT120I	GGNCC	2 cut(s)	685, 1152
BmiI	GGNNCC	2 cut(s)	705, 1153
BmrFI	CCNGG	2 cut(s)	561, 931
BmsI	GCATC	2 cut(s)	34, 1192
BmtI	GCTAGC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	408
BplI	GAGNNNNNCTC	4 cut(s)	938, 970, 1070, 1102
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	2 cut(s)	842, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse1I	ACTGG	4 cut(s)	474, 753, 900, 1059
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	931
BseDI	CCNNGG	2 cut(s)	842, 930
BseGI	GGATG	5 cut(s)	25, 196, 553, 1000, 1207
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	309, 1080
BseNI	ACTGG	4 cut(s)	474, 753, 900, 1059
BseRI	GAGGAG	2 cut(s)	304, 716
BseXI	GCAGC	3 cut(s)	517, 838, 848
BseYI	CCCAGC	1 cut(s)	1027
BsgI	GTGCAG	1 cut(s)	956
BshFI	GGCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	1164
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	5 cut(s)	137, 188, 407, 419, 920
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	920
BsoBI	CYCGRG	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
BspACI	CCGC	2 cut(s)	13, 533
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	308, 1081
BspHI	TCATGA	1 cut(s)	1101
BspLI	GGNNCC	2 cut(s)	705, 1153
BspOI	GCTAGC	1 cut(s)	129
BspPI	GGATC	3 cut(s)	326, 487, 630
BspTI	CTTAAG	1 cut(s)	1229
BspTNI	GGTCTC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	4 cut(s)	474, 753, 900, 1059
BssECI	CCNNGG	2 cut(s)	842, 930
BssMI	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
Bst2UI	CCWGG	1 cut(s)	931
Bst4CI	ACNGT	4 cut(s)	430, 798, 1070, 1129
Bst6I	CTCTTC	1 cut(s)	1114
BstAFI	CTTAAG	1 cut(s)	1229
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	5 cut(s)	11, 127, 131, 509, 971
BstDEI	CTNAG	2 cut(s)	295, 1089
BstF5I	GGATG	5 cut(s)	25, 196, 553, 1000, 1207
BstH2I	RGCGCY	1 cut(s)	842
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	8 cut(s)	241, 334, 358, 482, 625, 980, 1111, 1198
BstMAI	GTCTC	5 cut(s)	137, 188, 407, 419, 920
BstMBI	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	931
BstSCI	CCNGG	2 cut(s)	559, 929
BstV1I	GCAGC	3 cut(s)	517, 838, 848
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	3 cut(s)	238, 479, 622
BstYI	RGATCY	3 cut(s)	238, 479, 622
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	25, 196, 553, 1000, 1207
BtsIMutI	CAGTG	1 cut(s)	900
Cac8I	GCNNGC	5 cut(s)	11, 127, 131, 509, 971
CaiI	CAGNNNCTG	1 cut(s)	22
CciI	TCATGA	1 cut(s)	1101
CfoI	GCGC	1 cut(s)	841
Cfr13I	GGNCC	2 cut(s)	685, 1152
Csp6I	GTAC	3 cut(s)	347, 455, 1034
CviAII	CATG	7 cut(s)	169, 449, 619, 695, 860, 1102, 1171
CviQI	GTAC	3 cut(s)	347, 455, 1034
DdeI	CTNAG	2 cut(s)	295, 1089
DpnI	GATC	8 cut(s)	240, 333, 357, 481, 624, 979, 1110, 1197
DpnII	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
Eam1104I	CTCTTC	1 cut(s)	1114
EarI	CTCTTC	1 cut(s)	1114
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	2 cut(s)	685, 1152
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	1164
EcoRII	CCWGG	1 cut(s)	929
EcoT22I	ATGCAT	1 cut(s)	210
FaeI	CATG	7 cut(s)	172, 452, 622, 698, 863, 1105, 1174
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	7 cut(s)	168, 448, 618, 694, 859, 1101, 1170
FauNDI	CATATG	1 cut(s)	982
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	4 cut(s)	14, 531, 827, 837
FokI	GGATG	5 cut(s)	12, 203, 560, 1007, 1214
Fsp4HI	GCNGC	4 cut(s)	14, 531, 827, 837
FspBI	CTAG	4 cut(s)	126, 252, 378, 596
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	4 cut(s)	14, 531, 827, 837
GsaI	CCCAGC	1 cut(s)	1031
GsuI	CTGGAG	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	842
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	560
HhaI	GCGC	1 cut(s)	841
Hin1II	CATG	7 cut(s)	172, 452, 622, 698, 863, 1105, 1174
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	6 cut(s)	41, 275, 371, 442, 473, 655
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	128, 187
Hpy166II	GTNNAC	3 cut(s)	307, 893, 1045
Hpy188I	TCNGA	9 cut(s)	34, 82, 152, 163, 274, 355, 772, 912, 1090
Hpy188III	TCNNGA	7 cut(s)	378, 477, 500, 575, 659, 1102, 1199
Hpy8I	GTNNAC	3 cut(s)	307, 893, 1045
HpyAV	CCTTC	2 cut(s)	86, 211
HpyCH4III	ACNGT	4 cut(s)	430, 798, 1070, 1129
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	25, 208, 495, 523, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	295, 1089
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	7 cut(s)	172, 452, 622, 698, 863, 1105, 1174
HspAI	GCGC	1 cut(s)	839
Kzo9I	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
LmnI	GCTCC	2 cut(s)	703, 934
Lsp1109I	GCAGC	3 cut(s)	517, 838, 848
LweI	GCATC	2 cut(s)	34, 1192
MaeI	CTAG	4 cut(s)	126, 252, 378, 596
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	4 cut(s)	337, 435, 800, 1003
MalI	GATC	8 cut(s)	240, 333, 357, 481, 624, 979, 1110, 1197
MboI	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
MboII	GAAGA	8 cut(s)	47, 108, 398, 413, 474, 800, 1030, 1131
MflI	RGATCY	3 cut(s)	238, 479, 622
MluCI	AATT	7 cut(s)	391, 418, 722, 774, 941, 1095, 1184
MlyI	GAGTC	2 cut(s)	269, 649
Mph1103I	ATGCAT	1 cut(s)	210
MseI	TTAA	5 cut(s)	233, 585, 627, 867, 1230
MslI	CAYNNNNRTG	3 cut(s)	173, 379, 490
MspCI	CTTAAG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	561, 931
MvaI	CCWGG	1 cut(s)	931
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	982
NdeII	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	7 cut(s)	172, 452, 622, 698, 863, 1105, 1174
NlaIV	GGNNCC	2 cut(s)	705, 1153
NmeAIII	GCCGAG	1 cut(s)	867
NsiI	ATGCAT	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	1164
PagI	TCATGA	1 cut(s)	1101
PcsI	WCGNNNNNNNCGW	1 cut(s)	973
PfeI	GAWTC	4 cut(s)	41, 371, 442, 473
PkrI	GCNGC	4 cut(s)	15, 532, 828, 838
PleI	GAGTC	2 cut(s)	269, 649
PpsI	GAGTC	2 cut(s)	269, 649
Psp6I	CCWGG	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	1027
PspGI	CCWGG	1 cut(s)	929
PspN4I	GGNNCC	2 cut(s)	705, 1153
PspPI	GGNCC	2 cut(s)	685, 1152
PspXI	VCTCGAGB	1 cut(s)	1164
PsrI	GAACNNNNNNTAC	2 cut(s)	738, 770
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	238, 479, 622
RsaI	GTAC	3 cut(s)	348, 456, 1035
RsaNI	GTAC	3 cut(s)	347, 455, 1034
RseI	CAYNNNNRTG	3 cut(s)	173, 379, 490
SaqAI	TTAA	5 cut(s)	233, 585, 627, 867, 1230
SatI	GCNGC	4 cut(s)	14, 531, 827, 837
Sau3AI	GATC	8 cut(s)	238, 331, 355, 479, 622, 977, 1108, 1195
Sau96I	GGNCC	2 cut(s)	685, 1152
SchI	GAGTC	2 cut(s)	269, 649
ScrFI	CCNGG	2 cut(s)	561, 931
SfaNI	GCATC	2 cut(s)	34, 1192
Sfr274I	CTCGAG	1 cut(s)	1164
SinI	GGWCC	2 cut(s)	685, 1152
SlaI	CTCGAG	1 cut(s)	1164
SmiMI	CAYNNNNRTG	3 cut(s)	173, 379, 490
SmlI	CTYRAG	3 cut(s)	818, 1164, 1229
SmoI	CTYRAG	3 cut(s)	818, 1164, 1229
SpeI	ACTAGT	2 cut(s)	251, 595
Sse9I	AATT	7 cut(s)	391, 418, 722, 774, 941, 1095, 1184
SsiI	CCGC	2 cut(s)	13, 533
SspMI	CTAG	4 cut(s)	126, 252, 378, 596
StyD4I	CCNGG	2 cut(s)	559, 929
TaaI	ACNGT	4 cut(s)	430, 798, 1070, 1129
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	201, 576, 1165
TasI	AATT	7 cut(s)	391, 418, 722, 774, 941, 1095, 1184
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	4 cut(s)	41, 371, 442, 473
Tru1I	TTAA	5 cut(s)	233, 585, 627, 867, 1230
Tru9I	TTAA	5 cut(s)	233, 585, 627, 867, 1230
TscAI	CASTG	1 cut(s)	907
TseI	GCWGC	3 cut(s)	530, 826, 836
TspDTI	ATGAA	8 cut(s)	258, 363, 414, 683, 807, 828, 1011, 1152
TspRI	CASTG	1 cut(s)	907
Vha464I	CTTAAG	1 cut(s)	1229
VpaK11BI	GGWCC	2 cut(s)	685, 1152
XapI	RAATTY	4 cut(s)	391, 722, 774, 1095
XbaI	TCTAGA	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	1164
XmiI	GTMKAC	1 cut(s)	1044
XspI	CTAG	4 cut(s)	126, 252, 378, 596
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.